data_A1D5B # _chem_comp.id A1D5B _chem_comp.name "methyl (2~{S})-2,6-bis(azanyl)hexanoate" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms "Methyl lysinate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-02 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 160.214 _chem_comp.one_letter_code K _chem_comp.three_letter_code A1D5B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XIQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D5B N N1 N 0 1 N N N Y Y N 147.732 124.567 102.821 0.816 2.066 0.165 N A1D5B 1 A1D5B CA C1 C 0 1 N N S N Y N 148.177 123.737 103.934 0.921 0.636 0.483 CA A1D5B 2 A1D5B CB C2 C 0 1 N N N N N N 147.033 123.423 104.894 -0.217 -0.124 -0.201 CB A1D5B 3 A1D5B CG C3 C 0 1 N N N N N N 147.095 124.205 106.203 -1.556 0.324 0.387 CG A1D5B 4 A1D5B CD C4 C 0 1 N N N N N N 146.074 123.721 107.240 -2.694 -0.436 -0.297 CD A1D5B 5 A1D5B CE C5 C 0 1 N N N N N N 145.564 124.827 108.164 -4.034 0.012 0.291 CE A1D5B 6 A1D5B NZ N2 N 0 1 N N N N N N 144.370 125.439 107.618 -5.126 -0.717 -0.366 NZ A1D5B 7 A1D5B C C6 C 0 1 N N N N Y Y 148.656 122.409 103.378 2.244 0.108 -0.008 C A1D5B 8 A1D5B O O1 O 0 1 N N N N Y Y 149.470 121.785 103.959 2.856 0.709 -0.859 O A1D5B 9 A1D5B OXT O2 O 0 1 N N N N N Y 148.144 121.916 102.182 2.743 -1.030 0.501 OXT A1D5B 10 A1D5B C7 C7 C 0 1 N N N N N N 147.407 120.737 102.317 4.022 -1.479 -0.019 C7 A1D5B 11 A1D5B H1 H1 H 0 1 N N N Y Y N 147.412 125.448 103.169 0.876 2.220 -0.830 H1 A1D5B 12 A1D5B H2 H2 H 0 1 N N N Y Y N 148.494 124.714 102.190 -0.035 2.458 0.540 H2 A1D5B 13 A1D5B H4 H4 H 0 1 N N N N Y N 148.995 124.228 104.481 0.852 0.498 1.562 H4 A1D5B 14 A1D5B H5 H5 H 0 1 N N N N N N 146.084 123.662 104.392 -0.202 0.085 -1.271 H5 A1D5B 15 A1D5B H6 H6 H 0 1 N N N N N N 147.063 122.349 105.130 -0.089 -1.194 -0.039 H6 A1D5B 16 A1D5B H7 H7 H 0 1 N N N N N N 148.104 124.097 106.628 -1.572 0.115 1.457 H7 A1D5B 17 A1D5B H8 H8 H 0 1 N N N N N N 146.899 125.266 105.987 -1.685 1.394 0.225 H8 A1D5B 18 A1D5B H9 H9 H 0 1 N N N N N N 145.214 123.291 106.706 -2.679 -0.227 -1.367 H9 A1D5B 19 A1D5B H10 H10 H 0 1 N N N N N N 146.548 122.944 107.858 -2.566 -1.506 -0.135 H10 A1D5B 20 A1D5B H11 H11 H 0 1 N N N N N N 145.331 124.396 109.149 -4.049 -0.197 1.361 H11 A1D5B 21 A1D5B H12 H12 H 0 1 N N N N N N 146.345 125.594 108.275 -4.162 1.082 0.128 H12 A1D5B 22 A1D5B H13 H13 H 0 1 N N N N N N 144.052 126.159 108.235 -4.995 -1.714 -0.285 H13 A1D5B 23 A1D5B H14 H14 H 0 1 N N N N N N 144.578 125.835 106.723 -6.022 -0.439 0.005 H14 A1D5B 24 A1D5B H16 H16 H 0 1 N N N N N N 147.041 120.418 101.330 3.939 -1.650 -1.092 H16 A1D5B 25 A1D5B H17 H17 H 0 1 N N N N N N 148.048 119.951 102.742 4.779 -0.717 0.170 H17 A1D5B 26 A1D5B H18 H18 H 0 1 N N N N N N 146.552 120.914 102.986 4.310 -2.407 0.475 H18 A1D5B 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D5B OXT C7 SING N N 1 A1D5B OXT C SING N N 2 A1D5B N CA SING N N 3 A1D5B C CA SING N N 4 A1D5B C O DOUB N N 5 A1D5B CA CB SING N N 6 A1D5B CB CG SING N N 7 A1D5B CG CD SING N N 8 A1D5B CD CE SING N N 9 A1D5B NZ CE SING N N 10 A1D5B N H1 SING N N 11 A1D5B N H2 SING N N 12 A1D5B CA H4 SING N N 13 A1D5B CB H5 SING N N 14 A1D5B CB H6 SING N N 15 A1D5B CG H7 SING N N 16 A1D5B CG H8 SING N N 17 A1D5B CD H9 SING N N 18 A1D5B CD H10 SING N N 19 A1D5B CE H11 SING N N 20 A1D5B CE H12 SING N N 21 A1D5B NZ H13 SING N N 22 A1D5B NZ H14 SING N N 23 A1D5B C7 H16 SING N N 24 A1D5B C7 H17 SING N N 25 A1D5B C7 H18 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D5B InChI InChI 1.06 "InChI=1S/C7H16N2O2/c1-11-7(10)6(9)4-2-3-5-8/h6H,2-5,8-9H2,1H3/t6-/m0/s1" A1D5B InChIKey InChI 1.06 KPNBUPJZFJCCIQ-LURJTMIESA-N A1D5B SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](N)CCCCN" A1D5B SMILES CACTVS 3.385 "COC(=O)[CH](N)CCCCN" A1D5B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)[C@H](CCCCN)N" A1D5B SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)C(CCCCN)N" # _pdbx_chem_comp_identifier.comp_id A1D5B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (2~{S})-2,6-bis(azanyl)hexanoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D5B _pdbx_chem_comp_synonyms.name "Methyl lysinate" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D5B "Create component" 2024-01-02 PDBC A1D5B "Initial release" 2024-07-03 RCSB #