data_A1D5C # _chem_comp.id A1D5C _chem_comp.name "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-[(3~{R})-1-ethanoylpyrrolidin-3-yl]oxy-1~{H}-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-02 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D5C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XGY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D5C C27 C1 C 0 1 Y N N N N N -8.414 31.082 -8.072 -4.832 -0.881 -0.402 C27 A1D5C 1 A1D5C C28 C2 C 0 1 Y N N N N N -7.210 31.315 -7.523 -3.575 -0.282 -0.460 C28 A1D5C 2 A1D5C C29 C3 C 0 1 Y N N N N N -3.814 31.867 -4.957 0.192 1.874 0.018 C29 A1D5C 3 A1D5C C01 C4 C 0 1 N N N N N N -0.792 31.500 -11.510 6.884 -2.984 0.181 C01 A1D5C 4 A1D5C C02 C5 C 0 1 N N N N N N 0.175 32.281 -10.619 5.997 -1.888 0.712 C02 A1D5C 5 A1D5C O03 O1 O 0 1 N N N N N N 1.289 32.616 -11.045 6.132 -1.497 1.852 O03 A1D5C 6 A1D5C N04 N1 N 0 1 N N N N N N -0.251 32.615 -9.256 5.053 -1.342 -0.080 N04 A1D5C 7 A1D5C C05 C6 C 0 1 N N N N N N 0.554 33.416 -8.114 4.777 -1.725 -1.477 C05 A1D5C 8 A1D5C C06 C7 C 0 1 N N N N N N -0.399 33.451 -6.838 3.304 -1.311 -1.718 C06 A1D5C 9 A1D5C C07 C8 C 0 1 N N R N N N -1.198 32.417 -7.054 3.215 0.010 -0.908 C07 A1D5C 10 A1D5C C08 C9 C 0 1 N N N N N N -1.428 32.310 -8.708 4.123 -0.272 0.308 C08 A1D5C 11 A1D5C O09 O2 O 0 1 N N N N N N -2.465 32.684 -6.638 1.872 0.254 -0.486 O09 A1D5C 12 A1D5C C10 C10 C 0 1 Y N N N N N -2.632 32.530 -5.269 1.515 1.550 -0.285 C10 A1D5C 13 A1D5C C11 C11 C 0 1 Y N N N N N -1.814 33.010 -4.244 2.462 2.557 -0.382 C11 A1D5C 14 A1D5C C12 C12 C 0 1 Y N N N N N -2.185 32.803 -2.845 2.094 3.875 -0.177 C12 A1D5C 15 A1D5C C13 C13 C 0 1 Y N N N N N -3.389 32.127 -2.527 0.787 4.203 0.124 C13 A1D5C 16 A1D5C C14 C14 C 0 1 Y N N N N N -4.197 31.669 -3.587 -0.179 3.208 0.225 C14 A1D5C 17 A1D5C N15 N2 N 0 1 N N N N N N -5.500 30.941 -3.582 -1.538 3.266 0.510 N15 A1D5C 18 A1D5C C16 C15 C 0 1 N N N N N N -5.861 30.739 -4.991 -2.094 2.042 0.505 C16 A1D5C 19 A1D5C O17 O3 O 0 1 N N N N N N -6.878 30.167 -5.345 -3.264 1.786 0.720 O17 A1D5C 20 A1D5C C18 C16 C 0 1 N N N N N N -4.820 31.303 -5.884 -1.034 1.065 0.198 C18 A1D5C 21 A1D5C C19 C17 C 0 1 N N N N N N -4.751 31.342 -7.268 -1.159 -0.289 0.093 C19 A1D5C 22 A1D5C C20 C18 C 0 1 Y N N N N N -5.993 31.000 -8.092 -2.487 -0.910 0.148 C20 A1D5C 23 A1D5C C21 C19 C 0 1 Y N N N N N -5.981 30.409 -9.380 -2.661 -2.136 0.812 C21 A1D5C 24 A1D5C C22 C20 C 0 1 Y N N N N N -7.173 30.143 -9.948 -3.891 -2.721 0.869 C22 A1D5C 25 A1D5C C23 C21 C 0 1 Y N N N N N -8.395 30.510 -9.267 -4.985 -2.112 0.263 C23 A1D5C 26 A1D5C N24 N3 N 0 1 Y N N N N N -9.655 30.410 -9.553 -6.319 -2.441 0.147 N24 A1D5C 27 A1D5C C25 C22 C 0 1 Y N N N N N -10.393 30.912 -8.560 -6.922 -1.452 -0.567 C25 A1D5C 28 A1D5C N26 N4 N 0 1 Y N N N N N -9.649 31.348 -7.583 -6.056 -0.534 -0.880 N26 A1D5C 29 A1D5C H1 H1 H 0 1 N N N N N N -7.193 31.790 -6.553 -3.444 0.660 -0.971 H1 A1D5C 30 A1D5C H2 H2 H 0 1 N N N N N N -0.328 31.327 -12.492 7.775 -2.545 -0.269 H2 A1D5C 31 A1D5C H3 H3 H 0 1 N N N N N N -1.025 30.534 -11.039 7.177 -3.643 0.999 H3 A1D5C 32 A1D5C H4 H4 H 0 1 N N N N N N -1.719 32.078 -11.640 6.343 -3.558 -0.571 H4 A1D5C 33 A1D5C H5 H5 H 0 1 N N N N N N 1.493 32.896 -7.874 5.438 -1.186 -2.156 H5 A1D5C 34 A1D5C H6 H6 H 0 1 N N N N N N 0.777 34.439 -8.451 4.894 -2.801 -1.606 H6 A1D5C 35 A1D5C H7 H7 H 0 1 N N N N N N 0.175 33.323 -5.908 3.116 -1.133 -2.777 H7 A1D5C 36 A1D5C H8 H8 H 0 1 N N N N N N -0.968 34.391 -6.791 2.618 -2.059 -1.322 H8 A1D5C 37 A1D5C H9 H9 H 0 1 N N N N N N -0.806 31.458 -6.684 3.592 0.848 -1.494 H9 A1D5C 38 A1D5C H10 H10 H 0 1 N N N N N N -2.200 33.023 -9.035 3.520 -0.594 1.157 H10 A1D5C 39 A1D5C H11 H11 H 0 1 N N N N N N -1.729 31.290 -8.988 4.681 0.628 0.567 H11 A1D5C 40 A1D5C H12 H12 H 0 1 N N N N N N -0.903 33.537 -4.486 3.488 2.313 -0.617 H12 A1D5C 41 A1D5C H13 H13 H 0 1 N N N N N N -1.543 33.165 -2.056 2.837 4.655 -0.254 H13 A1D5C 42 A1D5C H14 H14 H 0 1 N N N N N N -3.680 31.967 -1.499 0.515 5.236 0.282 H14 A1D5C 43 A1D5C H15 H15 H 0 1 N N N N N N -6.022 30.649 -2.780 -2.025 4.086 0.691 H15 A1D5C 44 A1D5C H16 H16 H 0 1 N N N N N N -3.828 31.612 -7.760 -0.280 -0.905 -0.030 H16 A1D5C 45 A1D5C H17 H17 H 0 1 N N N N N N -5.054 30.181 -9.885 -1.816 -2.618 1.281 H17 A1D5C 46 A1D5C H18 H18 H 0 1 N N N N N N -7.216 29.656 -10.911 -4.016 -3.664 1.382 H18 A1D5C 47 A1D5C H19 H19 H 0 1 N N N N N N -10.021 30.014 -10.395 -6.748 -3.233 0.508 H19 A1D5C 48 A1D5C H20 H20 H 0 1 N N N N N N -11.472 30.952 -8.566 -7.971 -1.427 -0.824 H20 A1D5C 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D5C C01 C02 SING N N 1 A1D5C O03 C02 DOUB N N 2 A1D5C C02 N04 SING N N 3 A1D5C C22 C21 DOUB Y N 4 A1D5C C22 C23 SING Y N 5 A1D5C N24 C23 SING Y N 6 A1D5C N24 C25 SING Y N 7 A1D5C C21 C20 SING Y N 8 A1D5C C23 C27 DOUB Y N 9 A1D5C N04 C08 SING N N 10 A1D5C N04 C05 SING N N 11 A1D5C C08 C07 SING N N 12 A1D5C C25 N26 DOUB Y N 13 A1D5C C05 C06 SING N N 14 A1D5C C20 C28 DOUB Y N 15 A1D5C C20 C19 SING N N 16 A1D5C C27 N26 SING Y N 17 A1D5C C27 C28 SING Y N 18 A1D5C C19 C18 DOUB N Z 19 A1D5C C07 C06 SING N N 20 A1D5C C07 O09 SING N N 21 A1D5C O09 C10 SING N N 22 A1D5C C18 C16 SING N N 23 A1D5C C18 C29 SING N N 24 A1D5C O17 C16 DOUB N N 25 A1D5C C10 C29 DOUB Y N 26 A1D5C C10 C11 SING Y N 27 A1D5C C16 N15 SING N N 28 A1D5C C29 C14 SING Y N 29 A1D5C C11 C12 DOUB Y N 30 A1D5C C14 N15 SING N N 31 A1D5C C14 C13 DOUB Y N 32 A1D5C C12 C13 SING Y N 33 A1D5C C28 H1 SING N N 34 A1D5C C01 H2 SING N N 35 A1D5C C01 H3 SING N N 36 A1D5C C01 H4 SING N N 37 A1D5C C05 H5 SING N N 38 A1D5C C05 H6 SING N N 39 A1D5C C06 H7 SING N N 40 A1D5C C06 H8 SING N N 41 A1D5C C07 H9 SING N N 42 A1D5C C08 H10 SING N N 43 A1D5C C08 H11 SING N N 44 A1D5C C11 H12 SING N N 45 A1D5C C12 H13 SING N N 46 A1D5C C13 H14 SING N N 47 A1D5C N15 H15 SING N N 48 A1D5C C19 H16 SING N N 49 A1D5C C21 H17 SING N N 50 A1D5C C22 H18 SING N N 51 A1D5C N24 H19 SING N N 52 A1D5C C25 H20 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D5C InChI InChI 1.06 "InChI=1S/C22H20N4O3/c1-13(27)26-8-7-15(11-26)29-20-4-2-3-18-21(20)16(22(28)25-18)9-14-5-6-17-19(10-14)24-12-23-17/h2-6,9-10,12,15H,7-8,11H2,1H3,(H,23,24)(H,25,28)/b16-9-/t15-/m1/s1" A1D5C InChIKey InChI 1.06 VSPYYDBQSOJOEX-AVIKPIRVSA-N A1D5C SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CC[C@H](C1)Oc2cccc3NC(=O)C(=C/c4ccc5[nH]cnc5c4)\c23" A1D5C SMILES CACTVS 3.385 "CC(=O)N1CC[CH](C1)Oc2cccc3NC(=O)C(=Cc4ccc5[nH]cnc5c4)c23" A1D5C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CC[C@H](C1)Oc2cccc3c2/C(=C/c4ccc5c(c4)nc[nH]5)/C(=O)N3" A1D5C SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC(C1)Oc2cccc3c2C(=Cc4ccc5c(c4)nc[nH]5)C(=O)N3" # _pdbx_chem_comp_identifier.comp_id A1D5C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-[(3~{R})-1-ethanoylpyrrolidin-3-yl]oxy-1~{H}-indol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D5C "Create component" 2024-01-02 PDBC A1D5C "Initial release" 2024-06-12 RCSB #