data_A1D5D # _chem_comp.id A1D5D _chem_comp.name "(2~{S})-~{N}-[(4~{S})-6-azanyl-2,2,4-trimethyl-hexyl]-3-naphthalen-1-yl-2-[[2-phenylethyl(2-pyridin-2-ylethyl)carbamoyl]amino]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H49 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms L797591 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-03 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 607.828 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XIO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D5D C10 C1 C 0 1 N N N N N N 151.325 129.034 100.468 4.518 -0.651 1.011 C10 A1D5D 1 A1D5D C15 C2 C 0 1 N N N N N N 147.209 128.481 101.976 0.928 -2.246 -0.887 C15 A1D5D 2 A1D5D C17 C3 C 0 1 Y N N N N N 148.287 130.426 103.175 -0.521 -4.211 -0.413 C17 A1D5D 3 A1D5D C20 C4 C 0 1 Y N N N N N 147.035 129.817 105.565 -2.633 -3.197 -1.899 C20 A1D5D 4 A1D5D C21 C5 C 0 1 Y N N N N N 146.407 129.529 106.798 -3.687 -2.663 -2.658 C21 A1D5D 5 A1D5D C22 C6 C 0 1 Y N N N N N 145.556 128.444 106.907 -3.533 -1.456 -3.269 C22 A1D5D 6 A1D5D C24 C7 C 0 1 Y N N N N N 145.892 127.933 104.598 -1.300 -1.227 -2.428 C24 A1D5D 7 A1D5D C01 C8 C 0 1 N N N N N N 153.286 127.583 97.481 7.291 -0.638 -0.856 C01 A1D5D 8 A1D5D C02 C9 C 0 1 N N S N N N 151.894 127.937 98.000 7.138 0.040 0.507 C02 A1D5D 9 A1D5D C03 C10 C 0 1 N N N N N N 150.828 127.221 97.165 8.404 0.838 0.825 C03 A1D5D 10 A1D5D C04 C11 C 0 1 N N N N N N 151.317 126.947 95.743 8.553 1.980 -0.182 C04 A1D5D 11 A1D5D C06 C12 C 0 1 N N N N N N 151.682 129.452 97.990 6.921 -1.024 1.585 C06 A1D5D 12 A1D5D C07 C13 C 0 1 N N N N N N 151.354 130.072 99.358 5.569 -1.706 1.364 C07 A1D5D 13 A1D5D C08 C14 C 0 1 N N N N N N 152.406 131.098 99.753 5.151 -2.435 2.643 C08 A1D5D 14 A1D5D C09 C15 C 0 1 N N N N N N 149.997 130.745 99.308 5.687 -2.713 0.218 C09 A1D5D 15 A1D5D C12 C16 C 0 1 N N N N N N 149.524 127.476 101.247 2.142 -0.567 0.477 C12 A1D5D 16 A1D5D C14 C17 C 0 1 N N S N N N 148.125 127.238 101.809 0.811 -1.239 0.259 C14 A1D5D 17 A1D5D C16 C18 C 0 1 Y N N N N N 147.434 129.332 103.237 -0.367 -3.004 -1.024 C16 A1D5D 18 A1D5D C18 C19 C 0 1 Y N N N N N 148.533 131.224 104.289 -1.711 -4.926 -0.528 C18 A1D5D 19 A1D5D C19 C20 C 0 1 Y N N N N N 147.912 130.931 105.489 -2.754 -4.440 -1.254 C19 A1D5D 20 A1D5D C23 C21 C 0 1 Y N N N N N 145.295 127.636 105.806 -2.343 -0.740 -3.155 C23 A1D5D 21 A1D5D C25 C22 C 0 1 Y N N N N N 146.788 129.036 104.479 -1.422 -2.469 -1.782 C25 A1D5D 22 A1D5D C27 C23 C 0 1 N N N N N N 148.935 126.454 104.214 -1.499 -0.468 0.169 C27 A1D5D 23 A1D5D C30 C24 C 0 1 N N N N N N 149.376 125.444 106.512 -3.841 0.202 0.127 C30 A1D5D 24 A1D5D C31 C25 C 0 1 N N N N N N 148.267 125.795 107.501 -4.191 0.694 1.533 C31 A1D5D 25 A1D5D C32 C26 C 0 1 Y N N N N N 148.669 126.137 108.929 -5.649 0.427 1.810 C32 A1D5D 26 A1D5D C33 C27 C 0 1 Y N N N N N 147.705 126.567 109.814 -6.599 1.377 1.486 C33 A1D5D 27 A1D5D C34 C28 C 0 1 Y N N N N N 148.041 126.876 111.118 -7.935 1.133 1.740 C34 A1D5D 28 A1D5D C35 C29 C 0 1 Y N N N N N 149.351 126.762 111.540 -8.322 -0.062 2.318 C35 A1D5D 29 A1D5D C36 C30 C 0 1 Y N N N N N 150.316 126.330 110.656 -7.372 -1.012 2.642 C36 A1D5D 30 A1D5D C37 C31 C 0 1 Y N N N N N 149.971 126.016 109.353 -6.036 -0.770 2.383 C37 A1D5D 31 A1D5D C38 C32 C 0 1 N N N N N N 147.602 124.499 105.011 -2.015 1.729 -0.749 C38 A1D5D 32 A1D5D C39 C33 C 0 1 N N N N N N 148.143 123.148 104.552 -1.729 2.753 0.351 C39 A1D5D 33 A1D5D C40 C34 C 0 1 Y N N N N N 147.163 122.040 104.946 -1.307 4.058 -0.274 C40 A1D5D 34 A1D5D C41 C35 C 0 1 Y N N N N N 146.856 121.037 104.042 -1.984 5.220 0.048 C41 A1D5D 35 A1D5D C42 C36 C 0 1 Y N N N N N 145.968 120.037 104.404 -1.588 6.415 -0.533 C42 A1D5D 36 A1D5D C43 C37 C 0 1 Y N N N N N 145.418 120.089 105.673 -0.521 6.397 -1.418 C43 A1D5D 37 A1D5D C44 C38 C 0 1 Y N N N N N 145.771 121.122 106.519 0.107 5.196 -1.691 C44 A1D5D 38 A1D5D N05 N1 N 0 1 N N N N N N 150.571 127.737 94.787 9.769 2.747 0.124 N05 A1D5D 39 A1D5D N11 N2 N 0 1 N N N N N N 149.987 128.832 100.992 3.224 -1.304 0.800 N11 A1D5D 40 A1D5D N26 N3 N 0 1 N N N N N N 148.106 126.367 102.997 -0.196 -0.229 -0.079 N26 A1D5D 41 A1D5D N29 N4 N 0 1 N N N N N N 148.664 125.461 105.245 -2.425 0.461 -0.142 N29 A1D5D 42 A1D5D N45 N5 N 0 1 Y N N N N N 146.622 122.058 106.143 -0.293 4.079 -1.117 N45 A1D5D 43 A1D5D O13 O1 O 0 1 N N N N N N 150.220 126.552 101.019 2.241 0.636 0.360 O13 A1D5D 44 A1D5D O28 O2 O 0 1 N N N N N N 149.773 127.273 104.379 -1.839 -1.521 0.673 O28 A1D5D 45 A1D5D H1 H1 H 0 1 N N N N N N 151.698 128.079 100.070 4.435 0.066 1.827 H1 A1D5D 46 A1D5D H2 H2 H 0 1 N N N N N N 151.979 129.371 101.286 4.816 -0.132 0.100 H2 A1D5D 47 A1D5D H3 H3 H 0 1 N N N N N N 147.364 129.131 101.102 1.139 -1.716 -1.816 H3 A1D5D 48 A1D5D H4 H4 H 0 1 N N N N N N 146.167 128.129 101.991 1.738 -2.944 -0.675 H4 A1D5D 49 A1D5D H5 H5 H 0 1 N N N N N N 148.772 130.664 102.240 0.293 -4.622 0.166 H5 A1D5D 50 A1D5D H6 H6 H 0 1 N N N N N N 146.592 130.157 107.657 -4.615 -3.206 -2.756 H6 A1D5D 51 A1D5D H7 H7 H 0 1 N N N N N N 145.090 128.222 107.856 -4.345 -1.048 -3.852 H7 A1D5D 52 A1D5D H8 H8 H 0 1 N N N N N N 145.678 127.323 103.733 -0.384 -0.661 -2.348 H8 A1D5D 53 A1D5D H9 H9 H 0 1 N N N N N N 154.046 128.101 98.085 6.306 -0.862 -1.264 H9 A1D5D 54 A1D5D H10 H10 H 0 1 N N N N N N 153.439 126.496 97.553 7.823 0.027 -1.535 H10 A1D5D 55 A1D5D H11 H11 H 0 1 N N N N N N 153.376 127.897 96.431 7.855 -1.564 -0.739 H11 A1D5D 56 A1D5D H12 H12 H 0 1 N N N N N N 151.812 127.584 99.039 6.281 0.713 0.483 H12 A1D5D 57 A1D5D H13 H13 H 0 1 N N N N N N 149.928 127.852 97.118 8.331 1.248 1.832 H13 A1D5D 58 A1D5D H14 H14 H 0 1 N N N N N N 150.580 126.264 97.648 9.272 0.182 0.761 H14 A1D5D 59 A1D5D H15 H15 H 0 1 N N N N N N 151.182 125.880 95.514 8.625 1.570 -1.189 H15 A1D5D 60 A1D5D H16 H16 H 0 1 N N N N N N 152.384 127.205 95.671 7.685 2.636 -0.118 H16 A1D5D 61 A1D5D H17 H17 H 0 1 N N N N N N 152.602 129.923 97.614 7.716 -1.767 1.527 H17 A1D5D 62 A1D5D H18 H18 H 0 1 N N N N N N 150.850 129.675 97.306 6.935 -0.553 2.568 H18 A1D5D 63 A1D5D H19 H19 H 0 1 N N N N N N 152.151 131.527 100.733 5.145 -1.732 3.476 H19 A1D5D 64 A1D5D H20 H20 H 0 1 N N N N N N 153.390 130.610 99.812 4.153 -2.852 2.513 H20 A1D5D 65 A1D5D H21 H21 H 0 1 N N N N N N 152.438 131.899 98.999 5.857 -3.239 2.850 H21 A1D5D 66 A1D5D H22 H22 H 0 1 N N N N N N 149.769 131.186 100.290 6.398 -3.492 0.491 H22 A1D5D 67 A1D5D H23 H23 H 0 1 N N N N N N 150.008 131.537 98.544 4.712 -3.161 0.028 H23 A1D5D 68 A1D5D H24 H24 H 0 1 N N N N N N 149.228 130.001 99.053 6.034 -2.202 -0.680 H24 A1D5D 69 A1D5D H25 H25 H 0 1 N N N N N N 147.623 126.648 101.028 0.513 -1.758 1.170 H25 A1D5D 70 A1D5D H26 H26 H 0 1 N N N N N N 149.205 132.067 104.216 -1.807 -5.882 -0.033 H26 A1D5D 71 A1D5D H27 H27 H 0 1 N N N N N N 148.092 131.544 106.360 -3.671 -5.005 -1.334 H27 A1D5D 72 A1D5D H28 H28 H 0 1 N N N N N N 144.634 126.787 105.895 -2.247 0.214 -3.650 H28 A1D5D 73 A1D5D H29 H29 H 0 1 N N N N N N 149.798 124.450 106.720 -4.034 -0.869 0.058 H29 A1D5D 74 A1D5D H30 H30 H 0 1 N N N N N N 150.180 126.195 106.529 -4.453 0.729 -0.605 H30 A1D5D 75 A1D5D H31 H31 H 0 1 N N N N N N 147.729 126.664 107.095 -3.580 0.166 2.265 H31 A1D5D 76 A1D5D H32 H32 H 0 1 N N N N N N 147.586 124.932 107.550 -3.998 1.764 1.602 H32 A1D5D 77 A1D5D H33 H33 H 0 1 N N N N N N 146.680 126.663 109.487 -6.297 2.311 1.034 H33 A1D5D 78 A1D5D H34 H34 H 0 1 N N N N N N 147.279 127.207 111.808 -8.678 1.875 1.487 H34 A1D5D 79 A1D5D H35 H35 H 0 1 N N N N N N 149.618 127.010 112.557 -9.366 -0.253 2.517 H35 A1D5D 80 A1D5D H36 H36 H 0 1 N N N N N N 151.342 126.236 110.980 -7.674 -1.946 3.093 H36 A1D5D 81 A1D5D H37 H37 H 0 1 N N N N N N 150.730 125.674 108.665 -5.294 -1.514 2.632 H37 A1D5D 82 A1D5D H38 H38 H 0 1 N N N N N N 146.930 124.894 104.235 -2.814 2.100 -1.392 H38 A1D5D 83 A1D5D H39 H39 H 0 1 N N N N N N 147.040 124.357 105.946 -1.114 1.574 -1.343 H39 A1D5D 84 A1D5D H40 H40 H 0 1 N N N N N N 149.116 122.962 105.030 -2.629 2.909 0.945 H40 A1D5D 85 A1D5D H41 H41 H 0 1 N N N N N N 148.266 123.156 103.459 -0.930 2.383 0.993 H41 A1D5D 86 A1D5D H42 H42 H 0 1 N N N N N N 147.306 121.034 103.060 -2.811 5.196 0.742 H42 A1D5D 87 A1D5D H43 H43 H 0 1 N N N N N N 145.713 119.243 103.718 -2.098 7.338 -0.301 H43 A1D5D 88 A1D5D H44 H44 H 0 1 N N N N N N 144.721 119.331 105.998 -0.186 7.309 -1.889 H44 A1D5D 89 A1D5D H45 H45 H 0 1 N N N N N N 145.342 121.165 107.509 0.939 5.174 -2.380 H45 A1D5D 90 A1D5D H46 H46 H 0 1 N N N N N N 150.904 127.545 93.864 10.580 2.148 0.135 H46 A1D5D 91 A1D5D H47 H47 H 0 1 N N N N N N 149.601 127.503 94.847 9.889 3.508 -0.527 H47 A1D5D 92 A1D5D H49 H49 H 0 1 N N N N N N 149.391 129.614 101.175 3.145 -2.266 0.893 H49 A1D5D 93 A1D5D H50 H50 H 0 1 N N N N N N 147.444 125.618 102.976 0.076 0.610 -0.481 H50 A1D5D 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D5D N05 C04 SING N N 1 A1D5D C04 C03 SING N N 2 A1D5D C03 C02 SING N N 3 A1D5D C01 C02 SING N N 4 A1D5D C06 C02 SING N N 5 A1D5D C06 C07 SING N N 6 A1D5D C09 C07 SING N N 7 A1D5D C07 C08 SING N N 8 A1D5D C07 C10 SING N N 9 A1D5D C10 N11 SING N N 10 A1D5D N11 C12 SING N N 11 A1D5D O13 C12 DOUB N N 12 A1D5D C12 C14 SING N N 13 A1D5D C14 C15 SING N N 14 A1D5D C14 N26 SING N N 15 A1D5D C15 C16 SING N N 16 A1D5D N26 C27 SING N N 17 A1D5D C17 C16 DOUB Y N 18 A1D5D C17 C18 SING Y N 19 A1D5D C16 C25 SING Y N 20 A1D5D C41 C42 DOUB Y N 21 A1D5D C41 C40 SING Y N 22 A1D5D C27 O28 DOUB N N 23 A1D5D C27 N29 SING N N 24 A1D5D C18 C19 DOUB Y N 25 A1D5D C42 C43 SING Y N 26 A1D5D C25 C24 DOUB Y N 27 A1D5D C25 C20 SING Y N 28 A1D5D C39 C40 SING N N 29 A1D5D C39 C38 SING N N 30 A1D5D C24 C23 SING Y N 31 A1D5D C40 N45 DOUB Y N 32 A1D5D C38 N29 SING N N 33 A1D5D N29 C30 SING N N 34 A1D5D C19 C20 SING Y N 35 A1D5D C20 C21 DOUB Y N 36 A1D5D C43 C44 DOUB Y N 37 A1D5D C23 C22 DOUB Y N 38 A1D5D N45 C44 SING Y N 39 A1D5D C30 C31 SING N N 40 A1D5D C21 C22 SING Y N 41 A1D5D C31 C32 SING N N 42 A1D5D C32 C37 DOUB Y N 43 A1D5D C32 C33 SING Y N 44 A1D5D C37 C36 SING Y N 45 A1D5D C33 C34 DOUB Y N 46 A1D5D C36 C35 DOUB Y N 47 A1D5D C34 C35 SING Y N 48 A1D5D C10 H1 SING N N 49 A1D5D C10 H2 SING N N 50 A1D5D C15 H3 SING N N 51 A1D5D C15 H4 SING N N 52 A1D5D C17 H5 SING N N 53 A1D5D C21 H6 SING N N 54 A1D5D C22 H7 SING N N 55 A1D5D C24 H8 SING N N 56 A1D5D C01 H9 SING N N 57 A1D5D C01 H10 SING N N 58 A1D5D C01 H11 SING N N 59 A1D5D C02 H12 SING N N 60 A1D5D C03 H13 SING N N 61 A1D5D C03 H14 SING N N 62 A1D5D C04 H15 SING N N 63 A1D5D C04 H16 SING N N 64 A1D5D C06 H17 SING N N 65 A1D5D C06 H18 SING N N 66 A1D5D C08 H19 SING N N 67 A1D5D C08 H20 SING N N 68 A1D5D C08 H21 SING N N 69 A1D5D C09 H22 SING N N 70 A1D5D C09 H23 SING N N 71 A1D5D C09 H24 SING N N 72 A1D5D C14 H25 SING N N 73 A1D5D C18 H26 SING N N 74 A1D5D C19 H27 SING N N 75 A1D5D C23 H28 SING N N 76 A1D5D C30 H29 SING N N 77 A1D5D C30 H30 SING N N 78 A1D5D C31 H31 SING N N 79 A1D5D C31 H32 SING N N 80 A1D5D C33 H33 SING N N 81 A1D5D C34 H34 SING N N 82 A1D5D C35 H35 SING N N 83 A1D5D C36 H36 SING N N 84 A1D5D C37 H37 SING N N 85 A1D5D C38 H38 SING N N 86 A1D5D C38 H39 SING N N 87 A1D5D C39 H40 SING N N 88 A1D5D C39 H41 SING N N 89 A1D5D C41 H42 SING N N 90 A1D5D C42 H43 SING N N 91 A1D5D C43 H44 SING N N 92 A1D5D C44 H45 SING N N 93 A1D5D N05 H46 SING N N 94 A1D5D N05 H47 SING N N 95 A1D5D N11 H49 SING N N 96 A1D5D N26 H50 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D5D InChI InChI 1.06 "InChI=1S/C38H49N5O2/c1-29(19-22-39)27-38(2,3)28-41-36(44)35(26-32-16-11-15-31-14-7-8-18-34(31)32)42-37(45)43(24-20-30-12-5-4-6-13-30)25-21-33-17-9-10-23-40-33/h4-18,23,29,35H,19-22,24-28,39H2,1-3H3,(H,41,44)(H,42,45)/t29-,35+/m1/s1" A1D5D InChIKey InChI 1.06 MZKKCMXXGCRPGX-UYHPJTEGSA-N A1D5D SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCN)CC(C)(C)CNC(=O)[C@H](Cc1cccc2ccccc12)NC(=O)N(CCc3ccccc3)CCc4ccccn4" A1D5D SMILES CACTVS 3.385 "C[CH](CCN)CC(C)(C)CNC(=O)[CH](Cc1cccc2ccccc12)NC(=O)N(CCc3ccccc3)CCc4ccccn4" A1D5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCN)CC(C)(C)CNC(=O)[C@H](Cc1cccc2c1cccc2)NC(=O)N(CCc3ccccc3)CCc4ccccn4" A1D5D SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCN)CC(C)(C)CNC(=O)C(Cc1cccc2c1cccc2)NC(=O)N(CCc3ccccc3)CCc4ccccn4" # _pdbx_chem_comp_identifier.comp_id A1D5D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(4~{S})-6-azanyl-2,2,4-trimethyl-hexyl]-3-naphthalen-1-yl-2-[[2-phenylethyl(2-pyridin-2-ylethyl)carbamoyl]amino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D5D "Create component" 2024-01-03 PDBC A1D5D "Initial release" 2024-07-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D5D _pdbx_chem_comp_synonyms.name L797591 _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #