data_A1D5P # _chem_comp.id A1D5P _chem_comp.name "(2~{R},3~{S})-2-azanyl-3-(4-hydroxyphenyl)-3-oxidanyl-propanoic acid" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O4" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms "(betaS)-beta-hydroxy-D-tyrosine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 197.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W6Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D5P C C1 C 0 1 N N N N Y Y -7.179 6.678 23.932 3.093 -0.208 -0.326 C A1D5P 1 A1D5P N N1 N 0 1 N N N Y Y N -8.894 4.970 24.416 1.320 1.252 -1.118 N A1D5P 2 A1D5P O O1 O 0 1 N N N N Y Y -6.770 7.300 22.958 3.753 0.791 -0.161 O A1D5P 3 A1D5P CA C2 C 0 1 N N R N Y N -7.602 5.217 23.799 1.620 -0.098 -0.622 CA A1D5P 4 A1D5P CB C3 C 0 1 N N S N N N -6.508 4.349 24.452 0.822 -0.360 0.657 CB A1D5P 5 A1D5P OB O2 O 0 1 N N N N N N -7.032 3.027 24.530 1.182 0.604 1.649 OB A1D5P 6 A1D5P CG C4 C 0 1 Y N N N N N -5.218 4.376 23.663 -0.652 -0.249 0.361 CG A1D5P 7 A1D5P OH O3 O 0 1 N N N N N N -1.576 4.107 21.673 -4.686 0.053 -0.449 OH A1D5P 8 A1D5P CZ C5 C 0 1 Y N N N N N -2.779 4.259 22.308 -3.357 -0.047 -0.182 CZ A1D5P 9 A1D5P CD1 C6 C 0 1 Y N N N N N -4.130 5.124 24.093 -1.405 -1.393 0.167 CD1 A1D5P 10 A1D5P CD2 C7 C 0 1 Y N N N N N -5.065 3.575 22.541 -1.250 0.995 0.290 CD2 A1D5P 11 A1D5P CE1 C8 C 0 1 Y N N N N N -2.916 5.070 23.426 -2.755 -1.294 -0.105 CE1 A1D5P 12 A1D5P CE2 C9 C 0 1 Y N N N N N -3.860 3.512 21.865 -2.602 1.099 0.025 CE2 A1D5P 13 A1D5P OXT O4 O 0 1 N Y N N Y Y -7.292 7.222 25.148 3.674 -1.416 -0.251 OXT A1D5P 14 A1D5P H2 H1 H 0 1 N N N Y Y N -9.136 4.006 24.309 0.350 1.332 -1.385 H2 A1D5P 15 A1D5P H H2 H 0 1 N N N Y Y N -8.847 5.196 25.389 1.566 1.952 -0.434 H A1D5P 16 A1D5P HA H4 H 0 1 N N N N Y N -7.652 4.964 22.730 1.345 -0.832 -1.378 HA A1D5P 17 A1D5P HB2 H5 H 0 1 N N N N N N -6.313 4.737 25.463 1.044 -1.361 1.026 HB2 A1D5P 18 A1D5P HOB H6 H 0 1 N N N N N N -7.840 3.035 25.029 1.011 1.519 1.389 HOB A1D5P 19 A1D5P HH H7 H 0 1 N N N N N N -0.930 4.675 22.077 -5.247 0.051 0.338 HH A1D5P 20 A1D5P HD1 H8 H 0 1 N N N N N N -4.231 5.758 24.961 -0.936 -2.364 0.228 HD1 A1D5P 21 A1D5P HD2 H9 H 0 1 N N N N N N -5.902 2.990 22.189 -0.660 1.887 0.442 HD2 A1D5P 22 A1D5P HE1 H10 H 0 1 N N N N N N -2.079 5.657 23.775 -3.341 -2.188 -0.265 HE1 A1D5P 23 A1D5P HE2 H11 H 0 1 N N N N N N -3.761 2.882 20.993 -3.068 2.071 -0.035 HE2 A1D5P 24 A1D5P HXT H12 H 0 1 N N N N Y Y -7.012 8.129 25.117 4.622 -1.436 -0.063 HXT A1D5P 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D5P OH CZ SING N N 1 A1D5P CE2 CZ DOUB Y N 2 A1D5P CE2 CD2 SING Y N 3 A1D5P CZ CE1 SING Y N 4 A1D5P CD2 CG DOUB Y N 5 A1D5P O C DOUB N N 6 A1D5P CE1 CD1 DOUB Y N 7 A1D5P CG CD1 SING Y N 8 A1D5P CG CB SING N N 9 A1D5P CA C SING N N 10 A1D5P CA N SING N N 11 A1D5P CA CB SING N N 12 A1D5P CB OB SING N N 13 A1D5P C OXT SING N N 14 A1D5P N H2 SING N N 15 A1D5P N H SING N N 16 A1D5P CA HA SING N N 17 A1D5P CB HB2 SING N N 18 A1D5P OB HOB SING N N 19 A1D5P OH HH SING N N 20 A1D5P CD1 HD1 SING N N 21 A1D5P CD2 HD2 SING N N 22 A1D5P CE1 HE1 SING N N 23 A1D5P CE2 HE2 SING N N 24 A1D5P OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D5P InChI InChI 1.06 "InChI=1S/C9H11NO4/c10-7(9(13)14)8(12)5-1-3-6(11)4-2-5/h1-4,7-8,11-12H,10H2,(H,13,14)/t7-,8+/m1/s1" A1D5P InChIKey InChI 1.06 RKCRKDKQUDBXAU-SFYZADRCSA-N A1D5P SMILES_CANONICAL CACTVS 3.385 "N[C@H]([C@@H](O)c1ccc(O)cc1)C(O)=O" A1D5P SMILES CACTVS 3.385 "N[CH]([CH](O)c1ccc(O)cc1)C(O)=O" A1D5P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1[C@@H]([C@H](C(=O)O)N)O)O" A1D5P SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(C(C(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id A1D5P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-2-azanyl-3-(4-hydroxyphenyl)-3-oxidanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D5P "Create component" 2024-01-26 PDBC A1D5P "Initial release" 2024-06-12 RCSB A1D5P "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D5P _pdbx_chem_comp_synonyms.name "(betaS)-beta-hydroxy-D-tyrosine" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D5P _pdbx_chem_comp_pcm.modified_residue_id DTY _pdbx_chem_comp_pcm.type Hydroxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #