data_A1D61
#
_chem_comp.id A1D61
_chem_comp.name "(~{E})-2-(2,5-dimethoxyphenyl)-~{N}-[2-(4-hydroxyphenyl)ethyl]-3-(3-methoxy-4-oxidanyl-phenyl)prop-2-enamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H27 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-03-22
_chem_comp.pdbx_modified_date 2025-03-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 449.496
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1D61
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8YQO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1D61 C01 C1 C 0 1 Y N N N N N 147.318 132.366 181.170 -1.615 3.296 0.033 C01 A1D61 1
A1D61 C04 C2 C 0 1 Y N N N N N 147.499 132.028 179.829 -1.843 2.513 1.157 C04 A1D61 2
A1D61 C06 C3 C 0 1 Y N N N N N 144.950 131.953 180.957 -0.728 1.394 -1.127 C06 A1D61 3
A1D61 C02 C4 C 0 1 Y N N N N N 146.046 132.326 181.734 -1.062 2.737 -1.104 C02 A1D61 4
A1D61 C03 C5 C 0 1 Y N N N N N 146.404 131.652 179.048 -1.517 1.168 1.145 C03 A1D61 5
A1D61 C10 C6 C 0 1 Y N N N N N 145.128 131.606 179.611 -0.959 0.599 0.001 C10 A1D61 6
A1D61 C11 C7 C 0 1 N N N N N N 143.903 131.200 178.737 -0.609 -0.840 -0.019 C11 A1D61 7
A1D61 C13 C8 C 0 1 N N N N N N 143.601 129.873 179.494 0.802 -1.253 0.018 C13 A1D61 8
A1D61 C15 C9 C 0 1 N N N N N N 144.425 127.607 180.413 3.181 -0.736 0.105 C15 A1D61 9
A1D61 C16 C10 C 0 1 N N N N N N 143.508 126.690 179.559 4.075 0.504 0.161 C16 A1D61 10
A1D61 C08 C11 C 0 1 N N N N N N 149.553 133.172 179.726 -2.698 4.463 2.216 C08 A1D61 11
A1D61 C09 C12 C 0 1 N N N N N N 143.589 132.577 182.790 0.013 1.715 -3.364 C09 A1D61 12
A1D61 C17 C13 C 0 1 Y N N N N N 143.476 125.231 180.063 5.521 0.080 0.198 C17 A1D61 13
A1D61 C18 C14 C 0 1 Y N N N N N 142.276 124.688 180.518 6.221 -0.088 -0.982 C18 A1D61 14
A1D61 C19 C15 C 0 1 Y N N N N N 142.236 123.373 180.973 7.546 -0.477 -0.951 C19 A1D61 15
A1D61 C20 C16 C 0 1 Y N N N N N 144.593 123.140 180.512 7.471 -0.523 1.449 C20 A1D61 16
A1D61 C21 C17 C 0 1 Y N N N N N 144.635 124.457 180.059 6.146 -0.134 1.412 C21 A1D61 17
A1D61 C22 C18 C 0 1 Y N N N N N 143.392 122.599 180.970 8.174 -0.699 0.266 C22 A1D61 18
A1D61 C24 C19 C 0 1 N N N N N N 143.299 131.796 177.692 -1.593 -1.779 -0.070 C24 A1D61 19
A1D61 C25 C20 C 0 1 Y N N N N N 143.991 133.129 177.299 -2.990 -1.369 -0.255 C25 A1D61 20
A1D61 C26 C21 C 0 1 Y N N N N N 144.075 134.191 178.200 -4.021 -2.085 0.367 C26 A1D61 21
A1D61 C27 C22 C 0 1 Y N N N N N 145.175 134.448 175.648 -4.609 0.125 -1.220 C27 A1D61 22
A1D61 C28 C23 C 0 1 Y N N N N N 144.544 133.261 176.022 -3.297 -0.257 -1.049 C28 A1D61 23
A1D61 C29 C24 C 0 1 Y N N N N N 145.261 135.507 176.550 -5.630 -0.589 -0.608 C29 A1D61 24
A1D61 C31 C25 C 0 1 Y N N N N N 144.709 135.376 177.825 -5.333 -1.694 0.189 C31 A1D61 25
A1D61 C33 C26 C 0 1 N N N N N N 146.071 136.532 179.340 -5.960 -3.512 1.589 C33 A1D61 26
A1D61 N14 N1 N 0 1 N N N N N N 144.688 128.879 179.696 1.776 -0.324 0.069 N14 A1D61 27
A1D61 O05 O1 O 0 1 N N N N N N 148.793 132.073 179.274 -2.387 3.070 2.272 O05 A1D61 28
A1D61 O07 O2 O 0 1 N N N N N N 143.664 131.921 181.540 -0.185 0.846 -2.247 O07 A1D61 29
A1D61 O12 O3 O 0 1 N N N N N N 142.506 129.665 179.911 1.089 -2.435 0.002 O12 A1D61 30
A1D61 O23 O4 O 0 1 N N N N N N 143.340 121.272 181.428 9.478 -1.081 0.300 O23 A1D61 31
A1D61 O30 O5 O 0 1 N N N N N N 145.900 136.705 176.177 -6.922 -0.207 -0.781 O30 A1D61 32
A1D61 O32 O6 O 0 1 N N N N N N 144.799 136.445 178.735 -6.336 -2.391 0.786 O32 A1D61 33
A1D61 H1 H1 H 0 1 N N N N N N 148.166 132.659 181.772 -1.874 4.344 0.046 H1 A1D61 34
A1D61 H2 H2 H 0 1 N N N N N N 145.908 132.584 182.774 -0.891 3.350 -1.977 H2 A1D61 35
A1D61 H3 H3 H 0 1 N N N N N N 146.545 131.397 178.008 -1.698 0.559 2.019 H3 A1D61 36
A1D61 H5 H5 H 0 1 N N N N N N 143.930 127.825 181.371 3.414 -1.312 -0.790 H5 A1D61 37
A1D61 H6 H6 H 0 1 N N N N N N 145.379 127.093 180.602 3.357 -1.350 0.988 H6 A1D61 38
A1D61 H7 H7 H 0 1 N N N N N N 143.875 126.695 178.522 3.899 1.119 -0.723 H7 A1D61 39
A1D61 H8 H8 H 0 1 N N N N N N 142.485 127.093 179.587 3.842 1.081 1.056 H8 A1D61 40
A1D61 H9 H9 H 0 1 N N N N N N 150.548 133.148 179.257 -3.125 4.779 3.168 H9 A1D61 41
A1D61 H10 H10 H 0 1 N N N N N N 149.042 134.107 179.454 -1.789 5.031 2.019 H10 A1D61 42
A1D61 H11 H11 H 0 1 N N N N N N 149.662 133.118 180.819 -3.419 4.643 1.418 H11 A1D61 43
A1D61 H12 H12 H 0 1 N N N N N N 142.562 132.510 183.179 0.451 1.153 -4.188 H12 A1D61 44
A1D61 H13 H13 H 0 1 N N N N N N 144.281 132.097 183.498 -0.945 2.130 -3.676 H13 A1D61 45
A1D61 H14 H14 H 0 1 N N N N N N 143.866 133.634 182.666 0.685 2.525 -3.079 H14 A1D61 46
A1D61 H15 H15 H 0 1 N N N N N N 141.377 125.287 180.518 5.732 0.084 -1.930 H15 A1D61 47
A1D61 H16 H16 H 0 1 N N N N N N 141.307 122.953 181.329 8.093 -0.609 -1.873 H16 A1D61 48
A1D61 H17 H17 H 0 1 N N N N N N 145.490 122.539 180.508 7.958 -0.695 2.398 H17 A1D61 49
A1D61 H18 H18 H 0 1 N N N N N N 145.565 124.878 179.705 5.598 0.002 2.333 H18 A1D61 50
A1D61 H19 H19 H 0 1 N N N N N N 142.434 131.394 177.186 -1.346 -2.826 0.024 H19 A1D61 51
A1D61 H21 H21 H 0 1 N N N N N N 143.649 134.096 179.188 -3.789 -2.941 0.984 H21 A1D61 52
A1D61 H22 H22 H 0 1 N N N N N N 145.597 134.546 174.659 -4.844 0.983 -1.833 H22 A1D61 53
A1D61 H23 H23 H 0 1 N N N N N N 144.483 132.441 175.322 -2.505 0.301 -1.526 H23 A1D61 54
A1D61 H24 H24 H 0 1 N N N N N N 146.088 137.381 180.040 -5.313 -3.178 2.399 H24 A1D61 55
A1D61 H25 H25 H 0 1 N N N N N N 146.281 135.601 179.888 -6.853 -3.977 2.005 H25 A1D61 56
A1D61 H26 H26 H 0 1 N N N N N N 146.836 136.681 178.564 -5.426 -4.236 0.973 H26 A1D61 57
A1D61 H27 H27 H 0 1 N N N N N N 145.605 129.070 179.345 1.546 0.619 0.082 H27 A1D61 58
A1D61 H28 H28 H 0 1 N N N N N N 142.454 121.065 181.701 9.607 -2.039 0.288 H28 A1D61 59
A1D61 H29 H29 H 0 1 N N N N N N 145.871 137.319 176.902 -7.355 -0.620 -1.541 H29 A1D61 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1D61 C27 C28 DOUB Y N 1
A1D61 C27 C29 SING Y N 2
A1D61 C28 C25 SING Y N 3
A1D61 O30 C29 SING N N 4
A1D61 C29 C31 DOUB Y N 5
A1D61 C25 C24 SING N N 6
A1D61 C25 C26 DOUB Y N 7
A1D61 C24 C11 DOUB N E 8
A1D61 C31 C26 SING Y N 9
A1D61 C31 O32 SING N N 10
A1D61 O32 C33 SING N N 11
A1D61 C11 C13 SING N N 12
A1D61 C11 C10 SING N N 13
A1D61 C03 C10 DOUB Y N 14
A1D61 C03 C04 SING Y N 15
A1D61 O05 C08 SING N N 16
A1D61 O05 C04 SING N N 17
A1D61 C13 N14 SING N N 18
A1D61 C13 O12 DOUB N N 19
A1D61 C16 C17 SING N N 20
A1D61 C16 C15 SING N N 21
A1D61 C10 C06 SING Y N 22
A1D61 N14 C15 SING N N 23
A1D61 C04 C01 DOUB Y N 24
A1D61 C21 C17 DOUB Y N 25
A1D61 C21 C20 SING Y N 26
A1D61 C17 C18 SING Y N 27
A1D61 C20 C22 DOUB Y N 28
A1D61 C18 C19 DOUB Y N 29
A1D61 C06 O07 SING N N 30
A1D61 C06 C02 DOUB Y N 31
A1D61 C22 C19 SING Y N 32
A1D61 C22 O23 SING N N 33
A1D61 C01 C02 SING Y N 34
A1D61 O07 C09 SING N N 35
A1D61 C01 H1 SING N N 36
A1D61 C02 H2 SING N N 37
A1D61 C03 H3 SING N N 38
A1D61 C15 H5 SING N N 39
A1D61 C15 H6 SING N N 40
A1D61 C16 H7 SING N N 41
A1D61 C16 H8 SING N N 42
A1D61 C08 H9 SING N N 43
A1D61 C08 H10 SING N N 44
A1D61 C08 H11 SING N N 45
A1D61 C09 H12 SING N N 46
A1D61 C09 H13 SING N N 47
A1D61 C09 H14 SING N N 48
A1D61 C18 H15 SING N N 49
A1D61 C19 H16 SING N N 50
A1D61 C20 H17 SING N N 51
A1D61 C21 H18 SING N N 52
A1D61 C24 H19 SING N N 53
A1D61 C26 H21 SING N N 54
A1D61 C27 H22 SING N N 55
A1D61 C28 H23 SING N N 56
A1D61 C33 H24 SING N N 57
A1D61 C33 H25 SING N N 58
A1D61 C33 H26 SING N N 59
A1D61 N14 H27 SING N N 60
A1D61 O23 H28 SING N N 61
A1D61 O30 H29 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1D61 InChI InChI 1.06 "InChI=1S/C26H27NO6/c1-31-20-9-11-24(32-2)21(16-20)22(14-18-6-10-23(29)25(15-18)33-3)26(30)27-13-12-17-4-7-19(28)8-5-17/h4-11,14-16,28-29H,12-13H2,1-3H3,(H,27,30)/b22-14+"
A1D61 InChIKey InChI 1.06 ZZTHOXZXWINLQI-HYARGMPZSA-N
A1D61 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(OC)c(c1)\C(=C/c2ccc(O)c(OC)c2)C(=O)NCCc3ccc(O)cc3"
A1D61 SMILES CACTVS 3.385 "COc1ccc(OC)c(c1)C(=Cc2ccc(O)c(OC)c2)C(=O)NCCc3ccc(O)cc3"
A1D61 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(c(c1)/C(=C\c2ccc(c(c2)OC)O)/C(=O)NCCc3ccc(cc3)O)OC"
A1D61 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(c(c1)C(=Cc2ccc(c(c2)OC)O)C(=O)NCCc3ccc(cc3)O)OC"
#
_pdbx_chem_comp_identifier.comp_id A1D61
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(~{E})-2-(2,5-dimethoxyphenyl)-~{N}-[2-(4-hydroxyphenyl)ethyl]-3-(3-methoxy-4-oxidanyl-phenyl)prop-2-enamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1D61 "Create component" 2024-03-22 PDBC
A1D61 "Initial release" 2025-03-26 RCSB
#