data_A1D62 # _chem_comp.id A1D62 _chem_comp.name "(11R,16S)-11-(3,5-dichloro-4-methoxyphenyl)-4,7-dioxa-12,14-diazatetracyclo[8.7.0.03,8.012,16]heptadeca-1,3(8),9-triene-13,15-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 Cl2 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Tubulin polymerization-IN-41" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-26 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D62 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YRK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D62 N1 N1 N 0 1 N N N N N N 19.708 70.405 42.470 0.106 4.374 -0.841 N1 A1D62 1 A1D62 C4 C1 C 0 1 Y N N N N N 15.951 66.965 42.016 -1.202 0.164 0.741 C4 A1D62 2 A1D62 C5 C2 C 0 1 Y N N N N N 17.231 66.944 41.468 -0.896 0.050 -0.603 C5 A1D62 3 A1D62 C6 C3 C 0 1 N N R N N N 18.465 66.981 42.356 0.319 0.748 -1.159 C6 A1D62 4 A1D62 C7 C4 C 0 1 Y N N N N N 18.263 66.225 43.673 1.571 0.134 -0.572 C7 A1D62 5 A1D62 C8 C5 C 0 1 Y N N N N N 17.746 64.932 43.639 1.873 -1.170 -0.937 C8 A1D62 6 A1D62 C10 C6 C 0 1 Y N N N N N 17.842 64.816 46.038 3.825 -1.118 0.451 C10 A1D62 7 A1D62 C13 C7 C 0 1 N N N N N N 19.225 68.167 44.997 2.167 2.248 0.713 C13 A1D62 8 A1D62 C15 C8 C 0 1 N N N N N N 19.235 70.338 43.745 0.594 4.154 0.397 C15 A1D62 9 A1D62 C17 C9 C 0 1 N N N N N N 17.341 62.761 47.177 5.004 -3.140 0.869 C17 A1D62 10 A1D62 C20 C10 C 0 1 Y N N N N N 16.267 66.842 39.267 -2.815 -1.347 -0.928 C20 A1D62 11 A1D62 C1 C11 C 0 1 N N N N N N 13.726 66.520 37.843 -5.441 -1.170 0.927 C1 A1D62 12 A1D62 C11 C12 C 0 1 Y N N N N N 18.424 66.074 46.088 3.519 0.183 0.808 C11 A1D62 13 A1D62 C12 C13 C 0 1 Y N N N N N 18.624 66.787 44.905 2.394 0.819 0.293 C12 A1D62 14 A1D62 C14 C14 C 0 1 N N S N N N 18.580 68.986 43.932 0.703 2.649 0.538 C14 A1D62 15 A1D62 C16 C15 C 0 1 N N N N N N 19.444 69.230 41.772 -0.089 3.227 -1.508 C16 A1D62 16 A1D62 C18 C16 C 0 1 N N N N N N 16.707 62.261 45.938 4.605 -3.547 -0.555 C18 A1D62 17 A1D62 C19 C17 C 0 1 Y N N N N N 17.373 66.873 40.087 -1.700 -0.705 -1.436 C19 A1D62 18 A1D62 C2 C18 C 0 1 Y N N N N N 14.989 66.861 39.814 -3.119 -1.242 0.422 C2 A1D62 19 A1D62 C3 C19 C 0 1 Y N N N N N 14.846 66.926 41.188 -2.312 -0.480 1.255 C3 A1D62 20 A1D62 C9 C20 C 0 1 Y N N N N N 17.538 64.229 44.817 2.996 -1.801 -0.431 C9 A1D62 21 A1D62 N2 N2 N 0 1 N N N N N N 18.871 68.364 42.638 0.282 2.162 -0.795 N2 A1D62 22 A1D62 O1 O1 O 0 1 N N N N N N 13.755 66.841 39.226 -4.204 -1.886 0.927 O1 A1D62 23 A1D62 O2 O2 O 0 1 N N N N N N 19.313 71.223 44.568 0.885 4.989 1.227 O2 A1D62 24 A1D62 O3 O3 O 0 1 N N N N N N 19.765 68.984 40.622 -0.554 3.165 -2.629 O3 A1D62 25 A1D62 O4 O4 O 0 1 N N N N N N 17.747 64.138 47.224 4.936 -1.714 0.965 O4 A1D62 26 A1D62 O5 O5 O 0 1 N N N N N N 16.985 62.975 44.719 3.272 -3.082 -0.797 O5 A1D62 27 A1D62 CL1 CL1 CL 0 0 N N N N N N 13.229 66.958 41.824 -2.689 -0.346 2.945 CL1 A1D62 28 A1D62 CL2 CL2 CL 0 0 N N N N N N 16.499 66.769 37.548 -3.824 -2.294 -1.976 CL2 A1D62 29 A1D62 H11 H1 H 0 1 N N N N N N 20.183 71.196 42.085 -0.083 5.254 -1.203 H11 A1D62 30 A1D62 H4 H2 H 0 1 N N N N N N 15.822 67.012 43.087 -0.572 0.754 1.390 H4 A1D62 31 A1D62 H5 H3 H 0 1 N N N N N N 19.282 66.485 41.812 0.333 0.649 -2.244 H5 A1D62 32 A1D62 H6 H4 H 0 1 N N N N N N 17.506 64.474 42.691 1.226 -1.698 -1.622 H6 A1D62 33 A1D62 H8 H5 H 0 1 N N N N N N 19.023 68.604 45.986 2.446 2.361 1.761 H8 A1D62 34 A1D62 H9 H6 H 0 1 N N N N N N 20.312 68.119 44.833 2.792 2.902 0.105 H9 A1D62 35 A1D62 H13 H7 H 0 1 N N N N N N 18.239 62.150 47.353 4.316 -3.589 1.586 H13 A1D62 36 A1D62 H12 H8 H 0 1 N N N N N N 16.624 62.604 47.996 6.020 -3.475 1.076 H12 A1D62 37 A1D62 H2 H9 H 0 1 N N N N N N 12.686 66.535 37.484 -6.223 -1.796 1.356 H2 A1D62 38 A1D62 H1 H10 H 0 1 N N N N N N 14.318 67.259 37.283 -5.335 -0.263 1.522 H1 A1D62 39 A1D62 H3 H11 H 0 1 N N N N N N 14.152 65.517 37.690 -5.708 -0.905 -0.096 H3 A1D62 40 A1D62 H7 H12 H 0 1 N N N N N N 18.720 66.499 47.036 4.162 0.712 1.496 H7 A1D62 41 A1D62 H10 H13 H 0 1 N N N N N N 17.498 69.090 44.103 0.077 2.267 1.343 H10 A1D62 42 A1D62 H15 H14 H 0 1 N N N N N N 17.037 61.221 45.794 5.288 -3.092 -1.273 H15 A1D62 43 A1D62 H14 H15 H 0 1 N N N N N N 15.618 62.282 46.092 4.639 -4.632 -0.651 H14 A1D62 44 A1D62 H16 H16 H 0 1 N N N N N N 18.361 66.842 39.652 -1.458 -0.793 -2.485 H16 A1D62 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D62 C1 O1 SING N N 1 A1D62 O1 C2 SING N N 2 A1D62 C2 C3 DOUB Y N 3 A1D62 C3 CL1 SING N N 4 A1D62 C3 C4 SING Y N 5 A1D62 C4 C5 DOUB Y N 6 A1D62 C5 C6 SING N N 7 A1D62 C6 C7 SING N N 8 A1D62 C7 C8 DOUB Y N 9 A1D62 C8 C9 SING Y N 10 A1D62 C9 C10 DOUB Y N 11 A1D62 C10 C11 SING Y N 12 A1D62 C11 C12 DOUB Y N 13 A1D62 C12 C13 SING N N 14 A1D62 C13 C14 SING N N 15 A1D62 C14 C15 SING N N 16 A1D62 C15 O2 DOUB N N 17 A1D62 C15 N1 SING N N 18 A1D62 N1 C16 SING N N 19 A1D62 C16 O3 DOUB N N 20 A1D62 C16 N2 SING N N 21 A1D62 C10 O4 SING N N 22 A1D62 O4 C17 SING N N 23 A1D62 C17 C18 SING N N 24 A1D62 C18 O5 SING N N 25 A1D62 C5 C19 SING Y N 26 A1D62 C19 C20 DOUB Y N 27 A1D62 C20 CL2 SING N N 28 A1D62 C2 C20 SING Y N 29 A1D62 C6 N2 SING N N 30 A1D62 C7 C12 SING Y N 31 A1D62 C14 N2 SING N N 32 A1D62 C9 O5 SING N N 33 A1D62 N1 H11 SING N N 34 A1D62 C4 H4 SING N N 35 A1D62 C6 H5 SING N N 36 A1D62 C8 H6 SING N N 37 A1D62 C13 H8 SING N N 38 A1D62 C13 H9 SING N N 39 A1D62 C17 H13 SING N N 40 A1D62 C17 H12 SING N N 41 A1D62 C1 H2 SING N N 42 A1D62 C1 H1 SING N N 43 A1D62 C1 H3 SING N N 44 A1D62 C11 H7 SING N N 45 A1D62 C14 H10 SING N N 46 A1D62 C18 H15 SING N N 47 A1D62 C18 H14 SING N N 48 A1D62 C19 H16 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D62 InChI InChI 1.06 "InChI=1S/C20H16Cl2N2O5/c1-27-18-12(21)4-10(5-13(18)22)17-11-8-16-15(28-2-3-29-16)7-9(11)6-14-19(25)23-20(26)24(14)17/h4-5,7-8,14,17H,2-3,6H2,1H3,(H,23,25,26)/t14-,17+/m0/s1" A1D62 InChIKey InChI 1.06 GANPPQNYXDZLNS-WMLDXEAASA-N A1D62 SMILES_CANONICAL CACTVS 3.385 "COc1c(Cl)cc(cc1Cl)[C@H]2N3[C@@H](Cc4cc5OCCOc5cc24)C(=O)NC3=O" A1D62 SMILES CACTVS 3.385 "COc1c(Cl)cc(cc1Cl)[CH]2N3[CH](Cc4cc5OCCOc5cc24)C(=O)NC3=O" A1D62 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1c(cc(cc1Cl)[C@@H]2c3cc4c(cc3C[C@@H]5N2C(=O)NC5=O)OCCO4)Cl" A1D62 SMILES "OpenEye OEToolkits" 2.0.7 "COc1c(cc(cc1Cl)C2c3cc4c(cc3CC5N2C(=O)NC5=O)OCCO4)Cl" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D62 _pdbx_chem_comp_synonyms.name "Tubulin polymerization-IN-41" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D62 "Create component" 2024-03-26 PDBC A1D62 "Initial release" 2025-04-02 RCSB #