data_A1D63 # _chem_comp.id A1D63 _chem_comp.name "(2~{S})-3-(1~{H}-indol-3-yl)-2-methyl-2-[(4-nitrophenyl)carbamoylamino]-~{N}-[(1-pyridin-2-ylcyclohexyl)methyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H34 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PD 168368" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-27 _chem_comp.pdbx_modified_date 2025-07-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D63 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YRZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D63 CAK C1 C 0 1 N N N N N N 134.196 125.888 114.145 3.805 -1.167 1.059 CAK A1D63 1 A1D63 CAL C2 C 0 1 N N N N N N 133.401 127.141 114.114 2.977 -1.223 2.345 CAL A1D63 2 A1D63 CAM C3 C 0 1 N N N N N N 135.197 125.983 115.246 5.294 -1.170 1.411 CAM A1D63 3 A1D63 CAN C4 C 0 1 N N N N N N 132.690 127.446 115.426 3.299 -0.004 3.212 CAN A1D63 4 A1D63 CAO C5 C 0 1 N N N N N N 134.804 126.914 116.292 5.615 0.049 2.278 CAO A1D63 5 A1D63 CAP C6 C 0 1 N N N N N N 133.394 126.799 116.529 4.787 -0.006 3.563 CAP A1D63 6 A1D63 CAQ C7 C 0 1 N N N N N N 134.995 125.764 112.883 3.465 0.110 0.289 CAQ A1D63 7 A1D63 CAR C8 C 0 1 Y N N N N N 133.389 124.785 114.310 3.489 -2.368 0.206 CAR A1D63 8 A1D63 CAS C9 C 0 1 Y N N N N N 133.922 123.626 114.814 2.176 -2.774 0.058 CAS A1D63 9 A1D63 CAT C10 C 0 1 N N S N N N 133.521 124.479 109.680 0.096 -0.223 -1.493 CAT A1D63 10 A1D63 CAU C11 C 0 1 N N N N N N 134.345 124.551 110.908 1.556 -0.364 -1.149 CAU A1D63 11 A1D63 CAV C12 C 0 1 N N N N N N 134.234 123.458 108.744 -0.144 1.137 -2.152 CAV A1D63 12 A1D63 CAW C13 C 0 1 Y N N N N N 133.112 122.557 114.992 1.896 -3.880 -0.730 CAW A1D63 13 A1D63 CAX C14 C 0 1 N N N N N N 132.078 124.174 109.998 -0.310 -1.337 -2.460 CAX A1D63 14 A1D63 CAY C15 C 0 1 Y N N N N N 131.266 123.805 114.177 4.238 -4.074 -1.149 CAY A1D63 15 A1D63 CAZ C16 C 0 1 Y N N N N N 133.642 123.304 107.336 0.299 2.233 -1.217 CAZ A1D63 16 A1D63 CBA C17 C 0 1 Y N N N N N 131.787 122.654 114.667 2.951 -4.539 -1.343 CBA A1D63 17 A1D63 CBB C18 C 0 1 Y N N N N N 132.792 122.388 106.936 1.641 2.812 -1.126 CBB A1D63 18 A1D63 CBC C19 C 0 1 Y N N N N N 133.919 124.098 106.345 -0.465 2.869 -0.314 CBC A1D63 19 A1D63 CBD C20 C 0 1 Y N N N N N 132.537 122.636 105.676 1.574 3.793 -0.121 CBD A1D63 20 A1D63 CBE C21 C 0 1 N N N N N N 134.560 126.347 108.704 -2.048 -0.223 -0.336 CBE A1D63 21 A1D63 CBF C22 C 0 1 Y N N N N N 132.228 121.359 107.536 2.845 2.580 -1.794 CBF A1D63 22 A1D63 CBG C23 C 0 1 Y N N N N N 131.708 121.885 104.970 2.715 4.524 0.195 CBG A1D63 23 A1D63 CBH C24 C 0 1 Y N N N N N 131.351 120.547 106.858 3.954 3.308 -1.467 CBH A1D63 24 A1D63 CBI C25 C 0 1 Y N N N N N 131.086 120.809 105.544 3.893 4.279 -0.476 CBI A1D63 25 A1D63 CBJ C26 C 0 1 Y N N N N N 135.340 128.216 107.670 -4.183 -0.317 0.711 CBJ A1D63 26 A1D63 CBK C27 C 0 1 Y N N N N N 136.688 127.963 107.765 -4.818 -0.910 -0.372 CBK A1D63 27 A1D63 CBL C28 C 0 1 Y N N N N N 134.879 129.412 107.191 -4.937 0.269 1.719 CBL A1D63 28 A1D63 CBM C29 C 0 1 Y N N N N N 137.539 128.941 107.364 -6.197 -0.912 -0.445 CBM A1D63 29 A1D63 CBN C30 C 0 1 Y N N N N N 135.734 130.378 106.818 -6.316 0.259 1.642 CBN A1D63 30 A1D63 CBO C31 C 0 1 Y N N N N N 137.059 130.127 106.903 -6.945 -0.323 0.558 CBO A1D63 31 A1D63 NAE N1 N 0 1 N N N N N N 134.202 125.611 111.686 2.028 0.143 0.007 NAE A1D63 32 A1D63 NAF N2 N 0 1 Y N N N N N 132.097 124.851 114.023 4.467 -3.016 -0.396 NAF A1D63 33 A1D63 NAG N3 N 0 1 N N N N N N 133.452 125.744 109.018 -0.706 -0.321 -0.271 NAG A1D63 34 A1D63 NAH N4 N 0 1 Y N N N N N 133.227 123.694 105.321 0.281 3.803 0.352 NAH A1D63 35 A1D63 NAI N5 N 0 1 N N N N N N 134.369 127.430 108.006 -2.785 -0.314 0.789 NAI A1D63 36 A1D63 NAJ N6 N 1 1 N N N N N N 137.899 131.036 106.559 -8.423 -0.332 0.478 NAJ A1D63 37 A1D63 OAA O1 O 0 1 N N N N N N 135.152 123.673 111.115 2.307 -0.933 -1.913 OAA A1D63 38 A1D63 OAB O2 O 0 1 N N N N N N 135.640 125.884 108.985 -2.594 -0.053 -1.409 OAB A1D63 39 A1D63 OAC O3 O -1 1 N N N N N N 138.819 130.992 106.934 -9.084 0.174 1.368 OAC A1D63 40 A1D63 OAD O4 O 0 1 N N N N N N 137.602 131.787 105.965 -8.979 -0.845 -0.477 OAD A1D63 41 A1D63 H1 H1 H 0 1 N N N N N N 134.078 127.977 113.883 1.916 -1.221 2.094 H1 A1D63 42 A1D63 H2 H2 H 0 1 N N N N N N 132.644 127.053 113.321 3.219 -2.133 2.894 H2 A1D63 43 A1D63 H3 H3 H 0 1 N N N N N N 135.322 124.986 115.693 5.536 -2.080 1.960 H3 A1D63 44 A1D63 H4 H4 H 0 1 N N N N N N 136.155 126.317 114.821 5.884 -1.130 0.495 H4 A1D63 45 A1D63 H5 H5 H 0 1 N N N N N N 132.675 128.534 115.590 3.056 0.906 2.663 H5 A1D63 46 A1D63 H6 H6 H 0 1 N N N N N N 131.658 127.068 115.379 2.709 -0.043 4.127 H6 A1D63 47 A1D63 H7 H7 H 0 1 N N N N N N 135.352 126.679 117.217 6.676 0.048 2.529 H7 A1D63 48 A1D63 H8 H8 H 0 1 N N N N N N 135.040 127.941 115.977 5.373 0.959 1.729 H8 A1D63 49 A1D63 H9 H9 H 0 1 N N N N N N 133.135 127.293 117.477 5.016 0.862 4.181 H9 A1D63 50 A1D63 H10 H10 H 0 1 N N N N N N 133.111 125.737 116.579 5.030 -0.916 4.112 H10 A1D63 51 A1D63 H11 H11 H 0 1 N N N N N N 135.650 124.885 112.976 3.738 0.979 0.888 H11 A1D63 52 A1D63 H12 H12 H 0 1 N N N N N N 135.610 126.670 112.775 4.020 0.127 -0.649 H12 A1D63 53 A1D63 HAX H13 H 0 1 N N N N N N 134.971 123.568 115.065 1.379 -2.237 0.550 HAX A1D63 54 A1D63 H13 H14 H 0 1 N N N N N N 134.199 122.473 109.233 0.427 1.197 -3.079 H13 A1D63 55 A1D63 H14 H15 H 0 1 N N N N N N 135.281 123.777 108.635 -1.205 1.253 -2.371 H14 A1D63 56 A1D63 HA0 H16 H 0 1 N N N N N N 133.509 121.634 115.388 0.879 -4.221 -0.863 HA0 A1D63 57 A1D63 H15 H17 H 0 1 N N N N N N 131.676 124.954 110.661 -0.139 -2.306 -1.991 H15 A1D63 58 A1D63 H16 H18 H 0 1 N N N N N N 131.495 124.149 109.066 -1.366 -1.235 -2.709 H16 A1D63 59 A1D63 H17 H19 H 0 1 N N N N N N 132.012 123.197 110.498 0.286 -1.263 -3.370 H17 A1D63 60 A1D63 HA4 H20 H 0 1 N N N N N N 130.220 123.880 113.919 5.066 -4.582 -1.622 HA4 A1D63 61 A1D63 HBA H21 H 0 1 N N N N N N 131.144 121.797 114.803 2.770 -5.406 -1.960 HBA A1D63 62 A1D63 HBC H22 H 0 1 N N N N N N 134.598 124.938 106.368 -1.512 2.672 -0.140 HBC A1D63 63 A1D63 HBF H23 H 0 1 N N N N N N 132.457 121.152 108.571 2.900 1.826 -2.566 HBF A1D63 64 A1D63 HBG H24 H 0 1 N N N N N N 131.520 122.122 103.933 2.678 5.281 0.965 HBG A1D63 65 A1D63 HBH H25 H 0 1 N N N N N N 130.878 119.714 107.357 4.885 3.128 -1.984 HBH A1D63 66 A1D63 HBI H26 H 0 1 N N N N N N 130.408 120.188 104.977 4.777 4.846 -0.229 HBI A1D63 67 A1D63 HBK H27 H 0 1 N N N N N N 137.056 127.021 108.145 -4.234 -1.370 -1.155 HBK A1D63 68 A1D63 HBL H28 H 0 1 N N N N N N 133.815 129.581 107.112 -4.446 0.731 2.563 HBL A1D63 69 A1D63 HBM H29 H 0 1 N N N N N N 138.605 128.776 107.411 -6.692 -1.374 -1.287 HBM A1D63 70 A1D63 HBN H30 H 0 1 N N N N N N 135.372 131.330 106.460 -6.903 0.719 2.424 HBN A1D63 71 A1D63 HAE H31 H 0 1 N N N N N N 133.536 126.316 111.442 1.416 0.529 0.653 HAE A1D63 72 A1D63 HAG H32 H 0 1 N N N N N N 132.568 126.157 108.800 -0.270 -0.457 0.585 HAG A1D63 73 A1D63 HAH H33 H 0 1 N N N N N N 133.222 124.118 104.415 -0.052 4.385 1.052 HAH A1D63 74 A1D63 HAI H34 H 0 1 N N N N N N 133.439 127.662 107.720 -2.348 -0.377 1.652 HAI A1D63 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D63 CBG CBI DOUB Y N 1 A1D63 CBG CBD SING Y N 2 A1D63 NAH CBD SING Y N 3 A1D63 NAH CBC SING Y N 4 A1D63 CBI CBH SING Y N 5 A1D63 CBD CBB DOUB Y N 6 A1D63 OAD NAJ DOUB N N 7 A1D63 CBC CAZ DOUB Y N 8 A1D63 NAJ CBO SING N N 9 A1D63 NAJ OAC SING N N 10 A1D63 CBN CBO DOUB Y N 11 A1D63 CBN CBL SING Y N 12 A1D63 CBH CBF DOUB Y N 13 A1D63 CBO CBM SING Y N 14 A1D63 CBB CAZ SING Y N 15 A1D63 CBB CBF SING Y N 16 A1D63 CBL CBJ DOUB Y N 17 A1D63 CAZ CAV SING N N 18 A1D63 CBM CBK DOUB Y N 19 A1D63 CBJ CBK SING Y N 20 A1D63 CBJ NAI SING N N 21 A1D63 NAI CBE SING N N 22 A1D63 CBE OAB DOUB N N 23 A1D63 CBE NAG SING N N 24 A1D63 CAV CAT SING N N 25 A1D63 NAG CAT SING N N 26 A1D63 CAT CAX SING N N 27 A1D63 CAT CAU SING N N 28 A1D63 CAU OAA DOUB N N 29 A1D63 CAU NAE SING N N 30 A1D63 NAE CAQ SING N N 31 A1D63 CAQ CAK SING N N 32 A1D63 NAF CAY DOUB Y N 33 A1D63 NAF CAR SING Y N 34 A1D63 CAL CAK SING N N 35 A1D63 CAL CAN SING N N 36 A1D63 CAK CAR SING N N 37 A1D63 CAK CAM SING N N 38 A1D63 CAY CBA SING Y N 39 A1D63 CAR CAS DOUB Y N 40 A1D63 CBA CAW DOUB Y N 41 A1D63 CAS CAW SING Y N 42 A1D63 CAM CAO SING N N 43 A1D63 CAN CAP SING N N 44 A1D63 CAO CAP SING N N 45 A1D63 CAL H1 SING N N 46 A1D63 CAL H2 SING N N 47 A1D63 CAM H3 SING N N 48 A1D63 CAM H4 SING N N 49 A1D63 CAN H5 SING N N 50 A1D63 CAN H6 SING N N 51 A1D63 CAO H7 SING N N 52 A1D63 CAO H8 SING N N 53 A1D63 CAP H9 SING N N 54 A1D63 CAP H10 SING N N 55 A1D63 CAQ H11 SING N N 56 A1D63 CAQ H12 SING N N 57 A1D63 CAS HAX SING N N 58 A1D63 CAV H13 SING N N 59 A1D63 CAV H14 SING N N 60 A1D63 CAW HA0 SING N N 61 A1D63 CAX H15 SING N N 62 A1D63 CAX H16 SING N N 63 A1D63 CAX H17 SING N N 64 A1D63 CAY HA4 SING N N 65 A1D63 CBA HBA SING N N 66 A1D63 CBC HBC SING N N 67 A1D63 CBF HBF SING N N 68 A1D63 CBG HBG SING N N 69 A1D63 CBH HBH SING N N 70 A1D63 CBI HBI SING N N 71 A1D63 CBK HBK SING N N 72 A1D63 CBL HBL SING N N 73 A1D63 CBM HBM SING N N 74 A1D63 CBN HBN SING N N 75 A1D63 NAE HAE SING N N 76 A1D63 NAG HAG SING N N 77 A1D63 NAH HAH SING N N 78 A1D63 NAI HAI SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D63 InChI InChI 1.06 "InChI=1S/C31H34N6O4/c1-30(19-22-20-33-26-10-4-3-9-25(22)26,36-29(39)35-23-12-14-24(15-13-23)37(40)41)28(38)34-21-31(16-6-2-7-17-31)27-11-5-8-18-32-27/h3-5,8-15,18,20,33H,2,6-7,16-17,19,21H2,1H3,(H,34,38)(H2,35,36,39)/t30-/m0/s1" A1D63 InChIKey InChI 1.06 AFDXUTWMFMAQJO-PMERELPUSA-N A1D63 SMILES_CANONICAL CACTVS 3.385 "C[C@@](Cc1c[nH]c2ccccc12)(NC(=O)Nc3ccc(cc3)[N+]([O-])=O)C(=O)NCC4(CCCCC4)c5ccccn5" A1D63 SMILES CACTVS 3.385 "C[C](Cc1c[nH]c2ccccc12)(NC(=O)Nc3ccc(cc3)[N+]([O-])=O)C(=O)NCC4(CCCCC4)c5ccccn5" A1D63 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@](Cc1c[nH]c2c1cccc2)(C(=O)NCC3(CCCCC3)c4ccccn4)NC(=O)Nc5ccc(cc5)[N+](=O)[O-]" A1D63 SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cc1c[nH]c2c1cccc2)(C(=O)NCC3(CCCCC3)c4ccccn4)NC(=O)Nc5ccc(cc5)[N+](=O)[O-]" # _pdbx_chem_comp_identifier.comp_id A1D63 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-(1~{H}-indol-3-yl)-2-methyl-2-[(4-nitrophenyl)carbamoylamino]-~{N}-[(1-pyridin-2-ylcyclohexyl)methyl]propanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D63 _pdbx_chem_comp_synonyms.name "PD 168368" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D63 "Create component" 2024-03-27 PDBC A1D63 "Initial release" 2025-07-09 RCSB #