data_A1D66 # _chem_comp.id A1D66 _chem_comp.name "7-[(3-azanyl-5-chloranyl-phenyl)methyl]-8-[3-(4-chlorophenyl)propylsulfanyl]-3-methyl-purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H21 Cl2 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-28 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D66 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YTA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D66 N1 N1 N 0 1 N N N N N N -0.480 -24.050 -11.198 5.294 -2.575 -0.040 N1 A1D66 1 A1D66 C9 C1 C 0 1 N N N N N N -0.805 -23.215 -7.612 2.497 -4.406 1.507 C9 A1D66 2 A1D66 C5 C2 C 0 1 Y N N N N N -1.154 -21.808 -11.056 3.297 -1.386 -0.543 C5 A1D66 3 A1D66 C6 C3 C 0 1 N N N N N N -0.801 -22.909 -11.916 4.693 -1.524 -0.636 C6 A1D66 4 A1D66 N3 N2 N 0 1 N N N N N N -0.810 -23.102 -9.072 3.241 -3.391 0.757 N3 A1D66 5 A1D66 C4 C4 C 0 1 Y N N N N N -1.147 -21.925 -9.694 2.566 -2.336 0.163 C4 A1D66 6 A1D66 C2 C5 C 0 1 N N N N N N -0.466 -24.209 -9.831 4.578 -3.487 0.640 C2 A1D66 7 A1D66 O7 O1 O 0 1 N N N N N N -0.172 -25.276 -9.311 5.154 -4.424 1.160 O7 A1D66 8 A1D66 O8 O2 O 0 1 N N N N N N -0.756 -22.924 -13.146 5.353 -0.703 -1.249 O8 A1D66 9 A1D66 N10 N3 N 0 1 Y N N N N N -1.509 -20.772 -9.061 1.281 -1.985 0.099 N10 A1D66 10 A1D66 C11 C6 C 0 1 Y N N N N N -1.761 -19.881 -10.117 1.152 -0.876 -0.601 C11 A1D66 11 A1D66 N12 N4 N 0 1 Y N N N N N -1.553 -20.502 -11.308 2.378 -0.460 -1.018 N12 A1D66 12 A1D66 S13 S1 S 0 1 N N N N N N -2.263 -18.248 -9.854 -0.371 -0.055 -0.937 S13 A1D66 13 A1D66 C14 C7 C 0 1 N N N N N N -2.525 -18.155 -8.044 -1.519 -1.160 -0.078 C14 A1D66 14 A1D66 C15 C8 C 0 1 N N N N N N -3.069 -16.762 -7.779 -2.947 -0.634 -0.237 C15 A1D66 15 A1D66 C16 C9 C 0 1 N N N N N N -2.140 -15.675 -8.328 -3.918 -1.567 0.489 C16 A1D66 16 A1D66 C17 C10 C 0 1 Y N N N N N -0.740 -15.694 -7.764 -5.325 -1.049 0.333 C17 A1D66 17 A1D66 C18 C11 C 0 1 Y N N N N N -0.465 -15.139 -6.522 -6.096 -1.458 -0.739 C18 A1D66 18 A1D66 C19 C12 C 0 1 Y N N N N N 0.814 -15.164 -5.997 -7.387 -0.983 -0.882 C19 A1D66 19 A1D66 C20 C13 C 0 1 Y N N N N N 1.825 -15.750 -6.721 -7.905 -0.099 0.047 C20 A1D66 20 A1D66 C21 C14 C 0 1 Y N N N N N 1.587 -16.305 -7.958 -7.133 0.309 1.120 C21 A1D66 21 A1D66 C22 C15 C 0 1 Y N N N N N 0.303 -16.272 -8.472 -5.845 -0.170 1.265 C22 A1D66 22 A1D66 CL23 CL1 CL 0 0 N N N N N N 3.437 -15.797 -6.061 -9.526 0.498 -0.133 CL23 A1D66 23 A1D66 C24 C16 C 0 1 N N N N N N -1.718 -20.038 -12.707 2.671 0.730 -1.821 C24 A1D66 24 A1D66 C25 C17 C 0 1 Y N N N N N -0.488 -19.369 -13.292 2.917 1.904 -0.908 C25 A1D66 25 A1D66 C26 C18 C 0 1 Y N N N N N 0.459 -20.074 -14.026 4.194 2.174 -0.460 C26 A1D66 26 A1D66 C27 C19 C 0 1 Y N N N N N 1.569 -19.444 -14.589 4.420 3.256 0.381 C27 A1D66 27 A1D66 C28 C20 C 0 1 Y N N N N N 1.720 -18.070 -14.401 3.359 4.063 0.769 C28 A1D66 28 A1D66 C29 C21 C 0 1 Y N N N N N 0.779 -17.376 -13.670 2.082 3.788 0.318 C29 A1D66 29 A1D66 C30 C22 C 0 1 Y N N N N N -0.317 -18.002 -13.112 1.862 2.712 -0.525 C30 A1D66 30 A1D66 CL31 CL2 CL 0 0 N N N N N N 0.973 -15.658 -13.454 0.754 4.796 0.802 CL31 A1D66 31 A1D66 N32 N5 N 0 1 N N N N N N 2.490 -20.162 -15.322 5.712 3.531 0.836 N32 A1D66 32 A1D66 H1 H1 H 0 1 N N N N N N -0.229 -24.854 -11.737 6.256 -2.674 -0.106 H1 A1D66 33 A1D66 H4 H2 H 0 1 N N N N N N -1.100 -22.253 -7.168 2.203 -5.212 0.834 H4 A1D66 34 A1D66 H3 H3 H 0 1 N N N N N N -1.516 -23.995 -7.302 3.128 -4.807 2.301 H3 A1D66 35 A1D66 H2 H4 H 0 1 N N N N N N 0.205 -23.483 -7.269 1.606 -3.955 1.944 H2 A1D66 36 A1D66 H5 H5 H 0 1 N N N N N N -3.249 -18.917 -7.722 -1.451 -2.160 -0.507 H5 A1D66 37 A1D66 H6 H6 H 0 1 N N N N N N -1.574 -18.303 -7.511 -1.262 -1.200 0.980 H6 A1D66 38 A1D66 H7 H7 H 0 1 N N N N N N -4.053 -16.666 -8.261 -3.016 0.366 0.192 H7 A1D66 39 A1D66 H8 H8 H 0 1 N N N N N N -3.178 -16.623 -6.693 -3.205 -0.594 -1.295 H8 A1D66 40 A1D66 H9 H9 H 0 1 N N N N N N -2.071 -15.802 -9.418 -3.850 -2.567 0.061 H9 A1D66 41 A1D66 H10 H10 H 0 1 N N N N N N -2.587 -14.696 -8.101 -3.661 -1.607 1.548 H10 A1D66 42 A1D66 H11 H11 H 0 1 N N N N N N -1.263 -14.680 -5.957 -5.691 -2.147 -1.464 H11 A1D66 43 A1D66 H12 H12 H 0 1 N N N N N N 1.016 -14.728 -5.030 -7.989 -1.302 -1.720 H12 A1D66 44 A1D66 H13 H13 H 0 1 N N N N N N 2.390 -16.759 -8.519 -7.537 0.999 1.845 H13 A1D66 45 A1D66 H14 H14 H 0 1 N N N N N N 0.109 -16.704 -9.443 -5.241 0.148 2.102 H14 A1D66 46 A1D66 H15 H15 H 0 1 N N N N N N -1.967 -20.909 -13.332 3.559 0.549 -2.427 H15 A1D66 47 A1D66 H16 H16 H 0 1 N N N N N N -2.549 -19.317 -12.735 1.825 0.947 -2.472 H16 A1D66 48 A1D66 H17 H17 H 0 1 N N N N N N 0.332 -21.138 -14.164 5.018 1.544 -0.764 H17 A1D66 49 A1D66 H18 H18 H 0 1 N N N N N N 2.568 -17.553 -14.825 3.532 4.905 1.424 H18 A1D66 50 A1D66 H19 H19 H 0 1 N N N N N N -1.036 -17.434 -12.540 0.864 2.499 -0.877 H19 A1D66 51 A1D66 H21 H20 H 0 1 N N N N N N 3.211 -19.549 -15.644 6.452 2.966 0.564 H21 A1D66 52 A1D66 H20 H21 H 0 1 N N N N N N 2.891 -20.875 -14.747 5.869 4.287 1.423 H20 A1D66 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D66 N1 C2 SING N N 1 A1D66 C2 N3 SING N N 2 A1D66 N3 C4 SING N N 3 A1D66 C4 C5 DOUB Y N 4 A1D66 C5 C6 SING N N 5 A1D66 C6 N1 SING N N 6 A1D66 C2 O7 DOUB N N 7 A1D66 C6 O8 DOUB N N 8 A1D66 N3 C9 SING N N 9 A1D66 C4 N10 SING Y N 10 A1D66 N10 C11 DOUB Y N 11 A1D66 C11 N12 SING Y N 12 A1D66 N12 C5 SING Y N 13 A1D66 C11 S13 SING N N 14 A1D66 S13 C14 SING N N 15 A1D66 C14 C15 SING N N 16 A1D66 C15 C16 SING N N 17 A1D66 C16 C17 SING N N 18 A1D66 C17 C18 DOUB Y N 19 A1D66 C18 C19 SING Y N 20 A1D66 C19 C20 DOUB Y N 21 A1D66 C20 C21 SING Y N 22 A1D66 C21 C22 DOUB Y N 23 A1D66 C22 C17 SING Y N 24 A1D66 C20 CL23 SING N N 25 A1D66 N12 C24 SING N N 26 A1D66 C24 C25 SING N N 27 A1D66 C25 C26 DOUB Y N 28 A1D66 C26 C27 SING Y N 29 A1D66 C27 C28 DOUB Y N 30 A1D66 C28 C29 SING Y N 31 A1D66 C29 C30 DOUB Y N 32 A1D66 C30 C25 SING Y N 33 A1D66 C29 CL31 SING N N 34 A1D66 C27 N32 SING N N 35 A1D66 N1 H1 SING N N 36 A1D66 C9 H4 SING N N 37 A1D66 C9 H3 SING N N 38 A1D66 C9 H2 SING N N 39 A1D66 C14 H5 SING N N 40 A1D66 C14 H6 SING N N 41 A1D66 C15 H7 SING N N 42 A1D66 C15 H8 SING N N 43 A1D66 C16 H9 SING N N 44 A1D66 C16 H10 SING N N 45 A1D66 C18 H11 SING N N 46 A1D66 C19 H12 SING N N 47 A1D66 C21 H13 SING N N 48 A1D66 C22 H14 SING N N 49 A1D66 C24 H15 SING N N 50 A1D66 C24 H16 SING N N 51 A1D66 C26 H17 SING N N 52 A1D66 C28 H18 SING N N 53 A1D66 C30 H19 SING N N 54 A1D66 N32 H21 SING N N 55 A1D66 N32 H20 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D66 InChI InChI 1.06 "InChI=1S/C22H21Cl2N5O2S/c1-28-19-18(20(30)27-21(28)31)29(12-14-9-16(24)11-17(25)10-14)22(26-19)32-8-2-3-13-4-6-15(23)7-5-13/h4-7,9-11H,2-3,8,12,25H2,1H3,(H,27,30,31)" A1D66 InChIKey InChI 1.06 UPWWHYPFNBVCKJ-UHFFFAOYSA-N A1D66 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3cc(N)cc(Cl)c3)c(SCCCc4ccc(Cl)cc4)nc12" A1D66 SMILES CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3cc(N)cc(Cl)c3)c(SCCCc4ccc(Cl)cc4)nc12" A1D66 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)SCCCc3ccc(cc3)Cl)Cc4cc(cc(c4)Cl)N)C(=O)NC1=O" A1D66 SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)SCCCc3ccc(cc3)Cl)Cc4cc(cc(c4)Cl)N)C(=O)NC1=O" # _pdbx_chem_comp_identifier.comp_id A1D66 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(3-azanyl-5-chloranyl-phenyl)methyl]-8-[3-(4-chlorophenyl)propylsulfanyl]-3-methyl-purine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D66 "Create component" 2024-03-28 PDBC A1D66 "Modify synonyms" 2025-08-22 PDBC A1D66 "Initial release" 2025-10-22 RCSB #