data_A1D6J # _chem_comp.id A1D6J _chem_comp.name "2,4-dimethyl-6-[6-(oxan-4-yl)-1-[(1~{S})-1-phenylethyl]imidazo[4,5-c]pyridin-2-yl]pyridazin-3-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "BRD4 Inhibitor-10" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-01 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D6J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YHS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D6J N1 N1 N 0 1 N N N N N N -9.182 4.568 -1.416 -3.493 -0.706 0.144 N1 A1D6J 1 A1D6J O1 O1 O 0 1 N N N N N N -8.532 1.124 -1.800 -6.892 -0.683 0.161 O1 A1D6J 2 A1D6J C2 C1 C 0 1 N N N N N N -7.750 2.571 -0.096 -5.503 1.126 0.029 C2 A1D6J 3 A1D6J N3 N2 N 0 1 Y N N N N N -8.521 6.624 1.340 -1.340 2.221 0.055 N3 A1D6J 4 A1D6J C4 C2 C 0 1 N N N N N N -8.467 4.859 -0.353 -3.184 0.567 0.055 C4 A1D6J 5 A1D6J C5 C3 C 0 1 N N N N N N -8.504 2.254 -1.278 -5.747 -0.262 0.126 C5 A1D6J 6 A1D6J C6 C4 C 0 1 N N N N N N -10.035 3.045 -3.055 -4.973 -2.554 0.278 C6 A1D6J 7 A1D6J C8 C5 C 0 1 Y N N N N N -8.576 8.014 1.300 0.012 2.239 0.005 C8 A1D6J 8 A1D6J C10 C6 C 0 1 Y N N N N N -8.628 10.667 0.731 2.686 1.700 -0.117 C10 A1D6J 9 A1D6J C11 C7 C 0 1 Y N N N N N -8.578 9.783 -0.331 1.806 0.638 -0.128 C11 A1D6J 10 A1D6J C12 C8 C 0 1 Y N N N N N -8.553 8.432 -0.026 0.442 0.898 -0.067 C12 A1D6J 11 A1D6J C13 C9 C 0 1 N N S N N N -8.429 7.311 -2.253 -0.756 -1.336 -0.114 C13 A1D6J 12 A1D6J C14 C10 C 0 1 N N N N N N -9.687 7.925 -2.863 -1.354 -1.769 -1.454 C14 A1D6J 13 A1D6J C15 C11 C 0 1 Y N N N N N -7.134 7.971 -2.705 0.635 -1.901 0.022 C15 A1D6J 14 A1D6J C16 C12 C 0 1 Y N N N N N -7.102 8.874 -3.759 1.077 -2.361 1.248 C16 A1D6J 15 A1D6J C17 C13 C 0 1 Y N N N N N -5.906 9.455 -4.160 2.353 -2.879 1.373 C17 A1D6J 16 A1D6J C1 C14 C 0 1 N N N N N N -6.969 1.486 0.600 -6.640 2.113 -0.032 C1 A1D6J 17 A1D6J C3 C15 C 0 1 N N N N N N -7.744 3.891 0.343 -4.206 1.545 -0.007 C3 A1D6J 18 A1D6J N2 N3 N 0 1 N N N N N N -9.217 3.278 -1.857 -4.709 -1.117 0.178 N2 A1D6J 19 A1D6J C7 C16 C 0 1 Y N N N N N -8.497 6.251 0.074 -1.765 0.982 0.019 C7 A1D6J 20 A1D6J C9 C17 C 0 1 Y N N N N N -8.625 8.956 2.303 0.975 3.250 0.011 C9 A1D6J 21 A1D6J N4 N4 N 0 1 Y N N N N N -8.681 10.256 2.007 2.255 2.948 -0.049 N4 A1D6J 22 A1D6J N5 N5 N 0 1 Y N N N N N -8.504 7.305 -0.796 -0.696 0.127 -0.056 N5 A1D6J 23 A1D6J C18 C18 C 0 1 Y N N N N N -4.725 9.125 -3.536 3.185 -2.938 0.271 C18 A1D6J 24 A1D6J C19 C19 C 0 1 Y N N N N N -4.743 8.234 -2.489 2.743 -2.479 -0.956 C19 A1D6J 25 A1D6J C20 C20 C 0 1 Y N N N N N -5.942 7.670 -2.070 1.466 -1.965 -1.081 C20 A1D6J 26 A1D6J C21 C21 C 0 1 N N N N N N -8.691 12.166 0.516 4.168 1.432 -0.183 C21 A1D6J 27 A1D6J C22 C22 C 0 1 N N N N N N -10.039 12.674 1.031 4.693 1.109 1.219 C22 A1D6J 28 A1D6J C23 C23 C 0 1 N N N N N N -10.113 14.170 0.867 6.182 0.762 1.129 C23 A1D6J 29 A1D6J O2 O2 O 0 1 N N N N N N -9.040 14.818 1.548 6.360 -0.337 0.234 O2 A1D6J 30 A1D6J C24 C24 C 0 1 N N N N N N -7.778 14.425 1.029 5.930 -0.076 -1.104 C24 A1D6J 31 A1D6J C25 C25 C 0 1 N N N N N N -7.569 12.939 1.213 4.432 0.237 -1.104 C25 A1D6J 32 A1D6J H7 H1 H 0 1 N N N N N N -10.483 3.994 -3.384 -4.028 -3.096 0.310 H7 A1D6J 33 A1D6J H6 H2 H 0 1 N N N N N N -9.402 2.641 -3.858 -5.539 -2.757 1.187 H6 A1D6J 34 A1D6J H5 H3 H 0 1 N N N N N N -10.833 2.325 -2.820 -5.549 -2.878 -0.589 H5 A1D6J 35 A1D6J H9 H4 H 0 1 N N N N N N -8.559 10.131 -1.353 2.171 -0.377 -0.185 H9 A1D6J 36 A1D6J H10 H5 H 0 1 N N N N N N -8.389 6.265 -2.590 -1.380 -1.707 0.699 H10 A1D6J 37 A1D6J H13 H6 H 0 1 N N N N N N -9.605 7.917 -3.960 -1.472 -2.853 -1.466 H13 A1D6J 38 A1D6J H12 H7 H 0 1 N N N N N N -10.566 7.339 -2.557 -2.326 -1.296 -1.588 H12 A1D6J 39 A1D6J H11 H8 H 0 1 N N N N N N -9.797 8.961 -2.511 -0.688 -1.468 -2.263 H11 A1D6J 40 A1D6J H14 H9 H 0 1 N N N N N N -8.017 9.128 -4.273 0.427 -2.314 2.109 H14 A1D6J 41 A1D6J H15 H10 H 0 1 N N N N N N -5.903 10.172 -4.968 2.699 -3.237 2.331 H15 A1D6J 42 A1D6J H2 H11 H 0 1 N N N N N N -7.124 0.530 0.079 -6.920 2.281 -1.072 H2 A1D6J 43 A1D6J H1 H12 H 0 1 N N N N N N -5.899 1.740 0.589 -7.496 1.716 0.515 H1 A1D6J 44 A1D6J H3 H13 H 0 1 N N N N N N -7.314 1.396 1.641 -6.328 3.056 0.417 H3 A1D6J 45 A1D6J H4 H14 H 0 1 N N N N N N -7.180 4.166 1.222 -3.965 2.595 -0.080 H4 A1D6J 46 A1D6J H8 H15 H 0 1 N N N N N N -8.618 8.641 3.336 0.669 4.285 0.065 H8 A1D6J 47 A1D6J H16 H16 H 0 1 N N N N N N -3.794 9.561 -3.865 4.182 -3.342 0.368 H16 A1D6J 48 A1D6J H17 H17 H 0 1 N N N N N N -3.822 7.971 -1.990 3.393 -2.525 -1.816 H17 A1D6J 49 A1D6J H18 H18 H 0 1 N N N N N N -5.943 6.985 -1.235 1.118 -1.610 -2.040 H18 A1D6J 50 A1D6J H19 H19 H 0 1 N N N N N N -8.633 12.368 -0.564 4.680 2.313 -0.571 H19 A1D6J 51 A1D6J H20 H20 H 0 1 N N N N N N -10.851 12.203 0.458 4.560 1.975 1.867 H20 A1D6J 52 A1D6J H21 H21 H 0 1 N N N N N N -10.144 12.417 2.095 4.145 0.260 1.626 H21 A1D6J 53 A1D6J H23 H22 H 0 1 N N N N N N -10.059 14.417 -0.204 6.735 1.625 0.760 H23 A1D6J 54 A1D6J H22 H23 H 0 1 N N N N N N -11.068 14.529 1.278 6.551 0.489 2.118 H22 A1D6J 55 A1D6J H25 H24 H 0 1 N N N N N N -7.737 14.666 -0.043 6.480 0.776 -1.502 H25 A1D6J 56 A1D6J H24 H25 H 0 1 N N N N N N -6.983 14.971 1.559 6.118 -0.953 -1.724 H24 A1D6J 57 A1D6J H26 H26 H 0 1 N N N N N N -7.574 12.700 2.287 3.878 -0.630 -0.743 H26 A1D6J 58 A1D6J H27 H27 H 0 1 N N N N N N -6.601 12.650 0.777 4.110 0.480 -2.117 H27 A1D6J 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D6J C1 C2 SING N N 1 A1D6J C2 C3 DOUB N N 2 A1D6J C2 C5 SING N N 3 A1D6J C3 C4 SING N N 4 A1D6J C4 N1 DOUB N N 5 A1D6J C4 C7 SING N N 6 A1D6J N1 N2 SING N N 7 A1D6J N2 C5 SING N N 8 A1D6J N2 C6 SING N N 9 A1D6J C5 O1 DOUB N N 10 A1D6J C7 N3 DOUB Y N 11 A1D6J C7 N5 SING Y N 12 A1D6J N3 C8 SING Y N 13 A1D6J C8 C9 DOUB Y N 14 A1D6J C8 C12 SING Y N 15 A1D6J C9 N4 SING Y N 16 A1D6J N4 C10 DOUB Y N 17 A1D6J C10 C11 SING Y N 18 A1D6J C10 C21 SING N N 19 A1D6J C11 C12 DOUB Y N 20 A1D6J C12 N5 SING Y N 21 A1D6J N5 C13 SING N N 22 A1D6J C13 C14 SING N N 23 A1D6J C13 C15 SING N N 24 A1D6J C15 C16 DOUB Y N 25 A1D6J C15 C20 SING Y N 26 A1D6J C16 C17 SING Y N 27 A1D6J C17 C18 DOUB Y N 28 A1D6J C18 C19 SING Y N 29 A1D6J C19 C20 DOUB Y N 30 A1D6J C21 C22 SING N N 31 A1D6J C21 C25 SING N N 32 A1D6J C22 C23 SING N N 33 A1D6J C23 O2 SING N N 34 A1D6J O2 C24 SING N N 35 A1D6J C24 C25 SING N N 36 A1D6J C6 H7 SING N N 37 A1D6J C6 H6 SING N N 38 A1D6J C6 H5 SING N N 39 A1D6J C11 H9 SING N N 40 A1D6J C13 H10 SING N N 41 A1D6J C14 H13 SING N N 42 A1D6J C14 H12 SING N N 43 A1D6J C14 H11 SING N N 44 A1D6J C16 H14 SING N N 45 A1D6J C17 H15 SING N N 46 A1D6J C1 H2 SING N N 47 A1D6J C1 H1 SING N N 48 A1D6J C1 H3 SING N N 49 A1D6J C3 H4 SING N N 50 A1D6J C9 H8 SING N N 51 A1D6J C18 H16 SING N N 52 A1D6J C19 H17 SING N N 53 A1D6J C20 H18 SING N N 54 A1D6J C21 H19 SING N N 55 A1D6J C22 H20 SING N N 56 A1D6J C22 H21 SING N N 57 A1D6J C23 H23 SING N N 58 A1D6J C23 H22 SING N N 59 A1D6J C24 H25 SING N N 60 A1D6J C24 H24 SING N N 61 A1D6J C25 H26 SING N N 62 A1D6J C25 H27 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D6J InChI InChI 1.06 "InChI=1S/C25H27N5O2/c1-16-13-21(28-29(3)25(16)31)24-27-22-15-26-20(19-9-11-32-12-10-19)14-23(22)30(24)17(2)18-7-5-4-6-8-18/h4-8,13-15,17,19H,9-12H2,1-3H3/t17-/m0/s1" A1D6J InChIKey InChI 1.06 QNFGQQDKBYVNAS-KRWDZBQOSA-N A1D6J SMILES_CANONICAL CACTVS 3.385 "C[C@H](n1c2cc(ncc2nc1C3=NN(C)C(=O)C(=C3)C)C4CCOCC4)c5ccccc5" A1D6J SMILES CACTVS 3.385 "C[CH](n1c2cc(ncc2nc1C3=NN(C)C(=O)C(=C3)C)C4CCOCC4)c5ccccc5" A1D6J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CC(=NN(C1=O)C)c2nc3cnc(cc3n2[C@@H](C)c4ccccc4)C5CCOCC5" A1D6J SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CC(=NN(C1=O)C)c2nc3cnc(cc3n2C(C)c4ccccc4)C5CCOCC5" # _pdbx_chem_comp_identifier.comp_id A1D6J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,4-dimethyl-6-[6-(oxan-4-yl)-1-[(1~{S})-1-phenylethyl]imidazo[4,5-c]pyridin-2-yl]pyridazin-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D6J "Create component" 2024-03-01 PDBC A1D6J "Initial release" 2024-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D6J _pdbx_chem_comp_synonyms.name "BRD4 Inhibitor-10" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #