data_A1D6S # _chem_comp.id A1D6S _chem_comp.name "8-(1-methylpiperidin-4-yl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxidanylidene-pyrido[2,3-d]pyrimidine-6-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-15 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.538 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D6S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YNG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D6S C10 C1 C 0 1 N N N N N N 1.449 4.368 -26.849 -2.891 3.109 -0.006 C10 A1D6S 1 A1D6S C15 C2 C 0 1 N N N N N N -4.270 7.745 -27.677 3.572 -0.829 -1.351 C15 A1D6S 2 A1D6S C20 C3 C 0 1 N N N N N N 1.004 9.373 -26.166 -4.366 -1.537 -1.175 C20 A1D6S 3 A1D6S C21 C4 C 0 1 N N N N N N -0.046 10.498 -25.986 -4.610 -3.047 -1.135 C21 A1D6S 4 A1D6S C24 C5 C 0 1 N N N N N N -0.477 8.209 -24.561 -4.115 -1.571 1.308 C24 A1D6S 5 A1D6S C26 C6 C 0 1 N N N N N N -1.210 11.516 -24.120 -5.615 -4.829 0.161 C26 A1D6S 6 A1D6S C02 C7 C 0 1 Y N N N N N -1.940 5.824 -28.584 0.267 0.534 -0.372 C02 A1D6S 7 A1D6S C04 C8 C 0 1 Y N N N N N -0.126 6.098 -27.136 -2.005 0.830 -0.131 C04 A1D6S 8 A1D6S C05 C9 C 0 1 Y N N N N N 0.296 4.840 -27.440 -1.797 2.227 -0.132 C05 A1D6S 9 A1D6S C06 C10 C 0 1 Y N N N N N -0.413 4.086 -28.341 -0.486 2.712 -0.263 C06 A1D6S 10 A1D6S C08 C11 C 0 1 N N N N N N 1.708 6.423 -25.678 -4.338 1.122 0.111 C08 A1D6S 11 A1D6S C09 C12 C 0 1 N N N N N N 2.113 5.153 -25.980 -4.166 2.579 0.119 C09 A1D6S 12 A1D6S C12 C13 C 0 1 N N N N N N 0.061 8.234 -25.958 -3.459 -1.140 -0.007 C12 A1D6S 13 A1D6S C14 C14 C 0 1 N N N N N N -3.567 7.752 -29.027 2.694 0.198 -0.631 C14 A1D6S 14 A1D6S C16 C15 C 0 1 N N N N N N -5.043 9.029 -27.408 4.983 -0.259 -1.520 C16 A1D6S 15 A1D6S C18 C16 C 0 1 N N N N N N -5.038 9.511 -29.888 4.679 1.064 0.614 C18 A1D6S 16 A1D6S C19 C17 C 0 1 N N N N N N -4.527 8.114 -30.163 3.271 0.479 0.759 C19 A1D6S 17 A1D6S C23 C18 C 0 1 N N N N N N -0.180 9.479 -23.747 -4.366 -3.080 1.276 C23 A1D6S 18 A1D6S C27 C19 C 0 1 N N N N N N -6.352 12.093 -27.661 6.533 -1.939 1.241 C27 A1D6S 19 A1D6S C30 C20 C 0 1 N N N N N N 3.391 4.626 -25.346 -5.300 3.443 0.255 C30 A1D6S 20 A1D6S N01 N1 N 0 1 Y N N N N N -1.525 4.566 -28.895 0.500 1.842 -0.378 N01 A1D6S 21 A1D6S N03 N2 N 0 1 Y N N N N N -1.226 6.576 -27.705 -0.951 0.029 -0.252 N03 A1D6S 22 A1D6S N07 N3 N 0 1 N N N N N N 0.581 6.871 -26.240 -3.269 0.313 -0.006 N07 A1D6S 23 A1D6S N13 N4 N 0 1 N N N N N N -3.125 6.374 -29.209 1.334 -0.331 -0.496 N13 A1D6S 24 A1D6S N17 N5 N 0 1 N N N N N N -5.701 9.498 -28.603 5.489 0.149 -0.202 N17 A1D6S 25 A1D6S N22 N6 N 0 1 N N N N N N -0.095 10.728 -24.526 -5.239 -3.408 0.142 N22 A1D6S 26 A1D6S N31 N7 N 0 1 N N N N N N 4.255 4.164 -24.944 -6.199 4.128 0.363 N31 A1D6S 27 A1D6S O11 O1 O 0 1 N N N N N N 2.327 7.081 -24.909 -5.452 0.643 0.221 O11 A1D6S 28 A1D6S O28 O2 O 0 1 N N N N N N -7.689 10.748 -29.605 7.383 0.590 1.261 O28 A1D6S 29 A1D6S O29 O3 O 0 1 N N N N N N -7.958 9.964 -27.413 7.681 -0.704 -0.826 O29 A1D6S 30 A1D6S S25 S1 S 0 1 N N N N N N -6.991 10.539 -28.351 6.945 -0.412 0.354 S25 A1D6S 31 A1D6S H101 H1 H 0 0 N N N N N N 1.816 3.379 -27.081 -2.738 4.178 -0.002 H101 A1D6S 32 A1D6S H152 H2 H 0 0 N N N N N N -4.973 6.899 -27.651 3.617 -1.745 -0.762 H152 A1D6S 33 A1D6S H151 H3 H 0 0 N N N N N N -3.514 7.618 -26.888 3.148 -1.047 -2.331 H151 A1D6S 34 A1D6S H202 H4 H 0 0 N N N N N N 1.456 9.371 -27.169 -3.885 -1.271 -2.116 H202 A1D6S 35 A1D6S H201 H5 H 0 0 N N N N N N 1.799 9.409 -25.406 -5.318 -1.012 -1.091 H201 A1D6S 36 A1D6S H211 H6 H 0 0 N N N N N N 0.268 11.411 -26.513 -5.268 -3.331 -1.956 H211 A1D6S 37 A1D6S H212 H7 H 0 0 N N N N N N -1.028 10.177 -26.362 -3.660 -3.571 -1.232 H212 A1D6S 38 A1D6S H242 H8 H 0 0 N N N N N N -1.568 8.081 -24.614 -3.454 -1.329 2.140 H242 A1D6S 39 A1D6S H241 H9 H 0 0 N N N N N N -0.032 7.351 -24.036 -5.062 -1.047 1.432 H241 A1D6S 40 A1D6S H262 H10 H 0 0 N N N N N N -1.188 11.649 -23.028 -4.724 -5.442 0.024 H262 A1D6S 41 A1D6S H261 H11 H 0 0 N N N N N N -1.162 12.500 -24.610 -6.078 -5.069 1.117 H261 A1D6S 42 A1D6S H263 H12 H 0 0 N N N N N N -2.142 11.008 -24.408 -6.320 -5.029 -0.646 H263 A1D6S 43 A1D6S H061 H13 H 0 0 N N N N N N -0.067 3.097 -28.603 -0.288 3.773 -0.269 H061 A1D6S 44 A1D6S H121 H14 H 0 0 N N N N N N -0.795 8.399 -26.629 -2.493 -1.635 -0.112 H121 A1D6S 45 A1D6S H141 H15 H 0 0 N N N N N N -2.715 8.447 -29.012 2.669 1.122 -1.207 H141 A1D6S 46 A1D6S H161 H16 H 0 0 N N N N N N -4.344 9.802 -27.055 5.637 -1.021 -1.942 H161 A1D6S 47 A1D6S H162 H17 H 0 0 N N N N N N -5.799 8.837 -26.633 4.952 0.605 -2.184 H162 A1D6S 48 A1D6S H181 H18 H 0 0 N N N N N N -4.197 10.219 -29.867 4.622 2.037 0.125 H181 A1D6S 49 A1D6S H182 H19 H 0 0 N N N N N N -5.749 9.810 -30.672 5.134 1.176 1.598 H182 A1D6S 50 A1D6S H191 H20 H 0 0 N N N N N N -5.366 7.404 -30.188 2.632 1.193 1.280 H191 A1D6S 51 A1D6S H192 H21 H 0 0 N N N N N N -3.997 8.089 -31.127 3.319 -0.449 1.327 H192 A1D6S 52 A1D6S H231 H22 H 0 0 N N N N N N -0.980 9.598 -23.002 -3.417 -3.604 1.167 H231 A1D6S 53 A1D6S H232 H23 H 0 0 N N N N N N 0.782 9.335 -23.233 -4.846 -3.388 2.205 H232 A1D6S 54 A1D6S H271 H24 H 0 0 N N N N N N -5.832 11.888 -26.714 6.061 -2.642 0.555 H271 A1D6S 55 A1D6S H273 H25 H 0 0 N N N N N N -5.649 12.549 -28.374 7.443 -2.381 1.645 H273 A1D6S 56 A1D6S H272 H26 H 0 0 N N N N N N -7.188 12.784 -27.478 5.846 -1.711 2.057 H272 A1D6S 57 A1D6S H131 H27 H 0 0 N N N N N N -3.886 5.801 -28.904 1.185 -1.289 -0.495 H131 A1D6S 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D6S C19 C18 SING N N 1 A1D6S C19 C14 SING N N 2 A1D6S C18 N17 SING N N 3 A1D6S O28 S25 DOUB N N 4 A1D6S N13 C14 SING N N 5 A1D6S N13 C02 SING N N 6 A1D6S C14 C15 SING N N 7 A1D6S N01 C02 DOUB Y N 8 A1D6S N01 C06 SING Y N 9 A1D6S N17 S25 SING N N 10 A1D6S N17 C16 SING N N 11 A1D6S C02 N03 SING Y N 12 A1D6S S25 C27 SING N N 13 A1D6S S25 O29 DOUB N N 14 A1D6S C06 C05 DOUB Y N 15 A1D6S N03 C04 DOUB Y N 16 A1D6S C15 C16 SING N N 17 A1D6S C05 C04 SING Y N 18 A1D6S C05 C10 SING N N 19 A1D6S C04 N07 SING N N 20 A1D6S C10 C09 DOUB N N 21 A1D6S N07 C12 SING N N 22 A1D6S N07 C08 SING N N 23 A1D6S C20 C21 SING N N 24 A1D6S C20 C12 SING N N 25 A1D6S C21 N22 SING N N 26 A1D6S C09 C08 SING N N 27 A1D6S C09 C30 SING N N 28 A1D6S C12 C24 SING N N 29 A1D6S C08 O11 DOUB N N 30 A1D6S C30 N31 TRIP N N 31 A1D6S C24 C23 SING N N 32 A1D6S N22 C26 SING N N 33 A1D6S N22 C23 SING N N 34 A1D6S C10 H101 SING N N 35 A1D6S C15 H152 SING N N 36 A1D6S C15 H151 SING N N 37 A1D6S C20 H202 SING N N 38 A1D6S C20 H201 SING N N 39 A1D6S C21 H211 SING N N 40 A1D6S C21 H212 SING N N 41 A1D6S C24 H242 SING N N 42 A1D6S C24 H241 SING N N 43 A1D6S C26 H262 SING N N 44 A1D6S C26 H261 SING N N 45 A1D6S C26 H263 SING N N 46 A1D6S C06 H061 SING N N 47 A1D6S C12 H121 SING N N 48 A1D6S C14 H141 SING N N 49 A1D6S C16 H161 SING N N 50 A1D6S C16 H162 SING N N 51 A1D6S C18 H181 SING N N 52 A1D6S C18 H182 SING N N 53 A1D6S C19 H191 SING N N 54 A1D6S C19 H192 SING N N 55 A1D6S C23 H231 SING N N 56 A1D6S C23 H232 SING N N 57 A1D6S C27 H271 SING N N 58 A1D6S C27 H273 SING N N 59 A1D6S C27 H272 SING N N 60 A1D6S N13 H131 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D6S InChI InChI 1.06 "InChI=1S/C20H27N7O3S/c1-25-7-5-17(6-8-25)27-18-15(11-14(12-21)19(27)28)13-22-20(24-18)23-16-3-9-26(10-4-16)31(2,29)30/h11,13,16-17H,3-10H2,1-2H3,(H,22,23,24)" A1D6S InChIKey InChI 1.06 XHOIOLGPJDOFQU-UHFFFAOYSA-N A1D6S SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)N2C(=O)C(=Cc3cnc(NC4CCN(CC4)[S](C)(=O)=O)nc23)C#N" A1D6S SMILES CACTVS 3.385 "CN1CCC(CC1)N2C(=O)C(=Cc3cnc(NC4CCN(CC4)[S](C)(=O)=O)nc23)C#N" A1D6S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)N2c3c(cnc(n3)NC4CCN(CC4)S(=O)(=O)C)C=C(C2=O)C#N" A1D6S SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)N2c3c(cnc(n3)NC4CCN(CC4)S(=O)(=O)C)C=C(C2=O)C#N" # _pdbx_chem_comp_identifier.comp_id A1D6S _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(1-methylpiperidin-4-yl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxidanylidene-pyrido[2,3-d]pyrimidine-6-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D6S "Create component" 2024-03-15 PDBC A1D6S "Initial release" 2025-03-19 RCSB #