data_A1D72 # _chem_comp.id A1D72 _chem_comp.name "5-[[4-[4-methyl-2-(methylamino)-1,3-thiazol-5-yl]pyrimidin-2-yl]amino]-~{N}-(3-morpholin-4-ylpropyl)-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N8 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-25 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D72 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Z5A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D72 C8 C1 C 0 1 Y N N N N N 4.385 -10.132 -9.649 -3.870 -1.664 -0.830 C8 A1D72 1 A1D72 N7 N1 N 0 1 N N N N N N 9.259 -23.182 -7.050 9.953 -0.400 -0.272 N7 A1D72 2 A1D72 C5 C2 C 0 1 Y N N N N N 1.010 -11.621 -9.253 -7.273 -0.280 -0.086 C5 A1D72 3 A1D72 C6 C3 C 0 1 Y N N N N N 2.407 -11.414 -9.532 -5.816 -0.393 -0.272 C6 A1D72 4 A1D72 N6 N2 N 0 1 N N N N N N 9.021 -20.121 -9.750 5.080 -0.522 0.163 N6 A1D72 5 A1D72 N1 N3 N 0 1 N N N N N N -2.722 -11.288 -9.606 -11.056 -0.850 0.159 N1 A1D72 6 A1D72 C2 C4 C 0 1 Y N N N N N -1.399 -11.586 -9.456 -9.718 -0.506 0.110 C2 A1D72 7 A1D72 N3 N4 N 0 1 Y N N N N N 5.111 -11.190 -10.028 -3.144 -0.578 -0.606 N3 A1D72 8 A1D72 C4 C5 C 0 1 N N N N N N 0.779 -13.749 -7.853 -7.257 2.144 0.570 C4 A1D72 9 A1D72 C1 C6 C 0 1 N N N N N N -3.864 -12.019 -9.061 -12.056 0.151 0.538 C1 A1D72 10 A1D72 N2 N5 N 0 1 Y N N N N N -0.917 -12.820 -9.447 -9.244 0.674 0.382 N2 A1D72 11 A1D72 C3 C7 C 0 1 Y N N N N N 0.342 -12.762 -8.898 -7.943 0.832 0.287 C3 A1D72 12 A1D72 C7 C8 C 0 1 Y N N N N N 3.023 -10.189 -9.378 -5.240 -1.607 -0.669 C7 A1D72 13 A1D72 C9 C9 C 0 1 Y N N N N N 4.436 -12.368 -10.122 -3.713 0.558 -0.226 C9 A1D72 14 A1D72 N4 N6 N 0 1 N N N N N N 5.041 -13.522 -10.550 -2.917 1.669 -0.003 N4 A1D72 15 A1D72 C10 C10 C 0 1 Y N N N N N 6.297 -14.138 -10.340 -1.522 1.557 -0.072 C10 A1D72 16 A1D72 C11 C11 C 0 1 Y N N N N N 7.521 -13.469 -10.167 -0.761 2.634 -0.527 C11 A1D72 17 A1D72 C12 C12 C 0 1 Y N N N N N 8.698 -14.186 -10.006 0.610 2.540 -0.602 C12 A1D72 18 A1D72 C13 C13 C 0 1 Y N N N N N 8.623 -15.580 -10.048 1.250 1.364 -0.222 C13 A1D72 19 A1D72 N5 N7 N 0 1 Y N N N N N 9.604 -16.533 -9.924 2.572 0.983 -0.188 N5 A1D72 20 A1D72 C14 C14 C 0 1 Y N N N N N 9.029 -17.784 -10.029 2.650 -0.314 0.281 C14 A1D72 21 A1D72 C15 C15 C 0 1 N N N N N N 9.790 -19.036 -9.915 3.891 -1.081 0.463 C15 A1D72 22 A1D72 O1 O1 O 0 1 N N N N N N 11.022 -19.070 -9.947 3.844 -2.221 0.884 O1 A1D72 23 A1D72 C16 C16 C 0 1 N N N N N N 9.449 -21.487 -10.011 6.316 -1.287 0.344 C16 A1D72 24 A1D72 C17 C17 C 0 1 N N N N N N 8.519 -22.498 -9.364 7.513 -0.427 -0.067 C17 A1D72 25 A1D72 C18 C18 C 0 1 N N N N N N 9.209 -23.536 -8.481 8.804 -1.226 0.123 C18 A1D72 26 A1D72 C19 C19 C 0 1 N N N N N N 9.800 -21.836 -6.805 11.183 -1.203 -0.330 C19 A1D72 27 A1D72 C20 C20 C 0 1 N N N N N N 11.153 -21.890 -6.148 12.341 -0.319 -0.802 C20 A1D72 28 A1D72 O2 O2 O 0 1 N N N N N N 11.050 -22.458 -4.856 12.467 0.802 0.078 O2 A1D72 29 A1D72 C21 C21 C 0 1 N N N N N N 10.406 -23.726 -4.913 11.287 1.606 0.158 C21 A1D72 30 A1D72 C22 C22 C 0 1 N N N N N N 10.035 -24.182 -6.306 10.119 0.742 0.640 C22 A1D72 31 A1D72 C23 C23 C 0 1 Y N N N N N 7.678 -17.649 -10.216 1.397 -0.767 0.547 C23 A1D72 32 A1D72 C24 C24 C 0 1 Y N N N N N 7.393 -16.253 -10.238 0.487 0.273 0.239 C24 A1D72 33 A1D72 C25 C25 C 0 1 Y N N N N N 6.219 -15.511 -10.394 -0.908 0.383 0.315 C25 A1D72 34 A1D72 N8 N8 N 0 1 Y N N N N N 3.121 -12.512 -9.893 -5.021 0.657 -0.054 N8 A1D72 35 A1D72 S1 S1 S 0 1 Y N N N N N -0.153 -10.335 -9.275 -8.451 -1.570 -0.319 S1 A1D72 36 A1D72 H9 H1 H 0 1 N N N N N N 4.885 -9.180 -9.548 -3.394 -2.583 -1.139 H9 A1D72 37 A1D72 H14 H3 H 0 1 N N N N N N 8.086 -19.982 -9.424 5.117 0.387 -0.174 H14 A1D72 38 A1D72 H4 H4 H 0 1 N N N N N N -2.872 -11.280 -10.595 -11.332 -1.754 -0.059 H4 A1D72 39 A1D72 H7 H5 H 0 1 N N N N N N -0.041 -14.452 -7.646 -6.986 2.192 1.624 H7 A1D72 40 A1D72 H5 H6 H 0 1 N N N N N N 1.655 -14.305 -8.218 -6.357 2.222 -0.040 H5 A1D72 41 A1D72 H6 H7 H 0 1 N N N N N N 1.043 -13.212 -6.930 -7.931 2.966 0.329 H6 A1D72 42 A1D72 H2 H8 H 0 1 N N N N N N -4.797 -11.521 -9.363 -13.047 -0.302 0.520 H2 A1D72 43 A1D72 H3 H9 H 0 1 N N N N N N -3.857 -13.049 -9.446 -11.842 0.516 1.543 H3 A1D72 44 A1D72 H1 H10 H 0 1 N N N N N N -3.797 -12.037 -7.963 -12.023 0.982 -0.165 H1 A1D72 45 A1D72 H8 H11 H 0 1 N N N N N N 2.473 -9.315 -9.062 -5.854 -2.478 -0.845 H8 A1D72 46 A1D72 H10 H12 H 0 1 N N N N N N 4.453 -14.057 -11.157 -3.325 2.525 0.201 H10 A1D72 47 A1D72 H11 H13 H 0 1 N N N N N N 7.546 -12.389 -10.159 -1.252 3.549 -0.824 H11 A1D72 48 A1D72 H12 H14 H 0 1 N N N N N N 9.641 -13.683 -9.853 1.189 3.380 -0.956 H12 A1D72 49 A1D72 H13 H15 H 0 1 N N N N N N 10.577 -16.351 -9.781 3.326 1.535 -0.451 H13 A1D72 50 A1D72 H15 H16 H 0 1 N N N N N N 9.459 -21.656 -11.098 6.416 -1.572 1.391 H15 A1D72 51 A1D72 H16 H17 H 0 1 N N N N N N 10.463 -21.626 -9.608 6.283 -2.183 -0.275 H16 A1D72 52 A1D72 H18 H18 H 0 1 N N N N N N 7.796 -21.948 -8.743 7.412 -0.141 -1.114 H18 A1D72 53 A1D72 H17 H19 H 0 1 N N N N N N 7.985 -23.031 -10.164 7.546 0.469 0.553 H17 A1D72 54 A1D72 H20 H20 H 0 1 N N N N N N 8.667 -24.488 -8.581 8.771 -2.122 -0.496 H20 A1D72 55 A1D72 H19 H21 H 0 1 N N N N N N 10.241 -23.662 -8.840 8.904 -1.511 1.170 H19 A1D72 56 A1D72 H21 H22 H 0 1 N N N N N N 9.891 -21.308 -7.766 11.407 -1.599 0.660 H21 A1D72 57 A1D72 H22 H23 H 0 1 N N N N N N 9.107 -21.287 -6.150 11.046 -2.028 -1.030 H22 A1D72 58 A1D72 H23 H24 H 0 1 N N N N N N 11.830 -22.503 -6.761 13.266 -0.895 -0.792 H23 A1D72 59 A1D72 H24 H25 H 0 1 N N N N N N 11.557 -20.870 -6.065 12.141 0.033 -1.814 H24 A1D72 60 A1D72 H25 H26 H 0 1 N N N N N N 11.083 -24.475 -4.476 11.450 2.422 0.863 H25 A1D72 61 A1D72 H26 H27 H 0 1 N N N N N N 9.485 -23.670 -4.314 11.057 2.014 -0.826 H26 A1D72 62 A1D72 H28 H28 H 0 1 N N N N N N 10.959 -24.394 -6.863 9.205 1.336 0.648 H28 A1D72 63 A1D72 H27 H29 H 0 1 N N N N N N 9.436 -25.101 -6.226 10.326 0.377 1.646 H27 A1D72 64 A1D72 H29 H30 H 0 1 N N N N N N 6.963 -18.451 -10.326 1.141 -1.745 0.925 H29 A1D72 65 A1D72 H30 H31 H 0 1 N N N N N N 5.271 -16.004 -10.553 -1.499 -0.448 0.671 H30 A1D72 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D72 C1 N1 SING N N 1 A1D72 N1 C2 SING N N 2 A1D72 C2 N2 DOUB Y N 3 A1D72 N2 C3 SING Y N 4 A1D72 C3 C4 SING N N 5 A1D72 C3 C5 DOUB Y N 6 A1D72 C5 C6 SING N N 7 A1D72 C6 C7 DOUB Y N 8 A1D72 C7 C8 SING Y N 9 A1D72 C8 N3 DOUB Y N 10 A1D72 N3 C9 SING Y N 11 A1D72 C9 N4 SING N N 12 A1D72 N4 C10 SING N N 13 A1D72 C10 C11 DOUB Y N 14 A1D72 C11 C12 SING Y N 15 A1D72 C12 C13 DOUB Y N 16 A1D72 C13 N5 SING Y N 17 A1D72 N5 C14 SING Y N 18 A1D72 C14 C15 SING N N 19 A1D72 C15 O1 DOUB N N 20 A1D72 C15 N6 SING N N 21 A1D72 N6 C16 SING N N 22 A1D72 C16 C17 SING N N 23 A1D72 C17 C18 SING N N 24 A1D72 C18 N7 SING N N 25 A1D72 N7 C19 SING N N 26 A1D72 C19 C20 SING N N 27 A1D72 C20 O2 SING N N 28 A1D72 O2 C21 SING N N 29 A1D72 C21 C22 SING N N 30 A1D72 C14 C23 DOUB Y N 31 A1D72 C23 C24 SING Y N 32 A1D72 C24 C25 DOUB Y N 33 A1D72 C9 N8 DOUB Y N 34 A1D72 C5 S1 SING Y N 35 A1D72 C2 S1 SING Y N 36 A1D72 C6 N8 SING Y N 37 A1D72 C10 C25 SING Y N 38 A1D72 C13 C24 SING Y N 39 A1D72 N7 C22 SING N N 40 A1D72 C8 H9 SING N N 41 A1D72 N6 H14 SING N N 42 A1D72 N1 H4 SING N N 43 A1D72 C4 H7 SING N N 44 A1D72 C4 H5 SING N N 45 A1D72 C4 H6 SING N N 46 A1D72 C1 H2 SING N N 47 A1D72 C1 H3 SING N N 48 A1D72 C1 H1 SING N N 49 A1D72 C7 H8 SING N N 50 A1D72 N4 H10 SING N N 51 A1D72 C11 H11 SING N N 52 A1D72 C12 H12 SING N N 53 A1D72 N5 H13 SING N N 54 A1D72 C16 H15 SING N N 55 A1D72 C16 H16 SING N N 56 A1D72 C17 H18 SING N N 57 A1D72 C17 H17 SING N N 58 A1D72 C18 H20 SING N N 59 A1D72 C18 H19 SING N N 60 A1D72 C19 H21 SING N N 61 A1D72 C19 H22 SING N N 62 A1D72 C20 H23 SING N N 63 A1D72 C20 H24 SING N N 64 A1D72 C21 H25 SING N N 65 A1D72 C21 H26 SING N N 66 A1D72 C22 H28 SING N N 67 A1D72 C22 H27 SING N N 68 A1D72 C23 H29 SING N N 69 A1D72 C25 H30 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D72 InChI InChI 1.06 "InChI=1S/C25H30N8O2S/c1-16-22(36-25(26-2)29-16)20-6-8-28-24(32-20)30-18-4-5-19-17(14-18)15-21(31-19)23(34)27-7-3-9-33-10-12-35-13-11-33/h4-6,8,14-15,31H,3,7,9-13H2,1-2H3,(H,26,29)(H,27,34)(H,28,30,32)" A1D72 InChIKey InChI 1.06 OTGQZMLMXDRMMX-UHFFFAOYSA-N A1D72 SMILES_CANONICAL CACTVS 3.385 "CNc1sc(c(C)n1)c2ccnc(Nc3ccc4[nH]c(cc4c3)C(=O)NCCCN5CCOCC5)n2" A1D72 SMILES CACTVS 3.385 "CNc1sc(c(C)n1)c2ccnc(Nc3ccc4[nH]c(cc4c3)C(=O)NCCCN5CCOCC5)n2" A1D72 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(sc(n1)NC)c2ccnc(n2)Nc3ccc4c(c3)cc([nH]4)C(=O)NCCCN5CCOCC5" A1D72 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(sc(n1)NC)c2ccnc(n2)Nc3ccc4c(c3)cc([nH]4)C(=O)NCCCN5CCOCC5" # _pdbx_chem_comp_identifier.comp_id A1D72 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[4-[4-methyl-2-(methylamino)-1,3-thiazol-5-yl]pyrimidin-2-yl]amino]-~{N}-(3-morpholin-4-ylpropyl)-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D72 "Create component" 2024-04-25 PDBC A1D72 "Initial release" 2025-04-23 RCSB #