data_A1D7G # _chem_comp.id A1D7G _chem_comp.name "(2~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]amino]-4-methyl-pentanamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H34 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YXE _chem_comp.pdbx_subcomponent_list "TFA TBG LEU 79I" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7G C14 C15 C 0 1 N N N N N N -15.064 22.422 -4.448 -5.081 -0.075 -0.225 C1 TFA 1 A1D7G C15 C8 C 0 1 N N N N N N -16.160 21.800 -5.317 -6.231 -0.171 0.744 C2 TFA 2 A1D7G O3 O3 O 0 1 N N N N N N -14.960 23.632 -4.404 -5.289 -0.116 -1.419 O TFA 3 A1D7G F1 F1 F 0 1 N N N N N N -16.991 22.717 -5.791 -6.277 0.986 1.529 F1 TFA 4 A1D7G F2 F2 F 0 1 N N N N N N -16.888 20.924 -4.642 -7.430 -0.301 0.034 F2 TFA 5 A1D7G F3 F3 F 0 1 N N N N N N -15.654 21.161 -6.361 -6.055 -1.288 1.569 F3 TFA 6 A1D7G N5 N5 N 0 1 N N N N N N -14.283 21.574 -3.778 -3.822 0.061 0.236 N TBG 7 A1D7G C13 C7 C 0 1 N N S N N N -13.154 22.025 -2.981 -2.704 0.161 -0.706 CA TBG 8 A1D7G C16 C16 C 0 1 N N N N N N -13.479 21.947 -1.456 -2.542 1.615 -1.154 CB TBG 9 A1D7G C17 C9 C 0 1 N N N N N N -13.972 20.546 -1.082 -3.799 2.061 -1.902 CG1 TBG 10 A1D7G C18 C17 C 0 1 N N N N N N -14.567 22.962 -1.096 -2.335 2.506 0.072 CG2 TBG 11 A1D7G C19 C18 C 0 1 N N N N N N -12.227 22.259 -0.631 -1.329 1.731 -2.079 CG3 TBG 12 A1D7G C12 C14 C 0 1 N N N N N N -11.892 21.255 -3.374 -1.438 -0.302 -0.033 C TBG 13 A1D7G O4 O4 O 0 1 N N N N N N -11.869 20.027 -3.312 -1.386 -0.377 1.176 O TBG 14 A1D7G N4 N4 N 0 1 N N N N N N -10.851 21.980 -3.801 -0.362 -0.632 -0.775 N LEU 15 A1D7G C9 C21 C 0 1 N N S N N N -9.546 21.364 -3.979 0.907 -0.961 -0.121 CA LEU 16 A1D7G C1 C12 C 0 1 N N N N N N -9.038 20.808 -2.649 2.050 -0.620 -1.042 C LEU 17 A1D7G O1 O1 O 0 1 N N N N N N -9.135 21.472 -1.621 1.854 -0.500 -2.233 O LEU 18 A1D7G C10 C6 C 0 1 N N N N N N -8.529 22.353 -4.550 0.942 -2.455 0.204 CB LEU 19 A1D7G C11 C13 C 0 1 N N N N N N -8.488 22.471 -6.074 2.253 -2.792 0.916 CG LEU 20 A1D7G C20 C10 C 0 1 N N N N N N -8.993 21.201 -6.744 2.284 -2.104 2.282 CD1 LEU 21 A1D7G C21 C11 C 0 1 N N N N N N -9.260 23.687 -6.558 2.356 -4.307 1.106 CD2 LEU 22 A1D7G C8 C5 C 0 1 N N N N N N -6.325 18.809 -1.794 4.980 -1.193 -2.118 C16 79I 23 A1D7G C6 C3 C 0 1 N N N N N N -11.412 18.529 1.211 5.690 2.160 2.279 C12 79I 24 A1D7G C7 C4 C 0 1 N N N N N N -10.750 16.831 -0.240 3.796 1.635 1.041 C14 79I 25 A1D7G C5 C2 C 0 1 N N N N N N -10.042 18.903 0.671 5.950 2.711 0.859 C11 79I 26 A1D7G C4 C1 C 0 1 N N S N N N -9.916 18.051 -0.584 4.873 1.972 0.032 C10 79I 27 A1D7G C2 C19 C 0 1 N N S N N N -7.800 19.044 -1.521 4.377 -0.002 -1.417 C8 79I 28 A1D7G C3 C20 C 0 1 N N N N N N -8.495 17.759 -1.067 5.451 0.695 -0.580 C9 79I 29 A1D7G N1 N1 N 0 1 N N N N N N -8.462 19.603 -2.686 3.290 -0.449 -0.542 N7 79I 30 A1D7G N2 N3 N 0 1 N N N N N N -11.546 17.142 0.779 4.279 1.755 2.291 N13 79I 31 A1D7G N3 N2 N 0 1 N N N N N N -5.481 18.577 -0.859 4.520 -2.366 -1.896 N17 79I 32 A1D7G O2 O2 O 0 1 N N N N N N -10.716 15.739 -0.830 2.662 1.307 0.762 O15 79I 33 A1D7G H34 H34 H 0 1 N N N N N N -14.481 20.595 -3.825 -3.655 0.094 1.191 H TBG 34 A1D7G H11 H11 H 0 1 N N N N N N -12.973 23.085 -3.214 -2.904 -0.467 -1.575 HA TBG 35 A1D7G H12 H12 H 0 1 N N N N N N -14.196 20.511 -0.006 -4.663 1.978 -1.243 HG11 TBG 36 A1D7G H13 H13 H 0 1 N N N N N N -14.883 20.313 -1.653 -3.684 3.097 -2.221 HG12 TBG 37 A1D7G H14 H14 H 0 1 N N N N N N -13.192 19.808 -1.319 -3.947 1.426 -2.776 HG13 TBG 38 A1D7G H22 H22 H 0 1 N N N N N N -14.787 22.898 -0.020 -1.439 2.188 0.606 HG21 TBG 39 A1D7G H23 H23 H 0 1 N N N N N N -14.217 23.976 -1.339 -2.220 3.542 -0.247 HG22 TBG 40 A1D7G H24 H24 H 0 1 N N N N N N -15.479 22.741 -1.671 -3.199 2.423 0.732 HG23 TBG 41 A1D7G H25 H25 H 0 1 N N N N N N -12.469 22.201 0.440 -1.448 1.049 -2.921 HG31 TBG 42 A1D7G H26 H26 H 0 1 N N N N N N -11.440 21.529 -0.869 -1.251 2.753 -2.449 HG32 TBG 43 A1D7G H27 H27 H 0 1 N N N N N N -11.872 23.272 -0.872 -0.425 1.474 -1.528 HG33 TBG 44 A1D7G H33 H33 H 0 1 N N N N N N -10.972 22.953 -3.999 -0.428 -0.653 -1.743 H LEU 45 A1D7G H31 H31 H 0 1 N N N N N N -9.639 20.526 -4.685 0.999 -0.386 0.801 HA LEU 46 A1D7G H9 H9 H 0 1 N N N N N N -7.530 22.042 -4.210 0.102 -2.706 0.853 HB2 LEU 47 A1D7G H10 H10 H 0 1 N N N N N N -8.762 23.348 -4.142 0.871 -3.030 -0.719 HB3 LEU 48 A1D7G H21 H21 H 0 1 N N N N N N -7.436 22.606 -6.367 3.093 -2.444 0.314 HG LEU 49 A1D7G H15 H15 H 0 1 N N N N N N -8.418 20.338 -6.376 1.486 -2.503 2.908 HD11 LEU 50 A1D7G H16 H16 H 0 1 N N N N N N -10.058 21.060 -6.507 3.247 -2.287 2.760 HD12 LEU 51 A1D7G H17 H17 H 0 1 N N N N N N -8.868 21.287 -7.834 2.141 -1.031 2.151 HD13 LEU 52 A1D7G H18 H18 H 0 1 N N N N N N -8.875 24.589 -6.059 2.334 -4.797 0.133 HD21 LEU 53 A1D7G H19 H19 H 0 1 N N N N N N -9.137 23.790 -7.646 3.291 -4.547 1.613 HD22 LEU 54 A1D7G H20 H20 H 0 1 N N N N N N -10.327 23.563 -6.319 1.516 -4.655 1.707 HD23 LEU 55 A1D7G H8 H8 H 0 1 N N N N N N -5.974 18.839 -2.815 5.799 -1.055 -2.807 H1 79I 56 A1D7G H6 H6 H 0 1 N N N N N N -11.444 18.610 2.308 6.331 1.301 2.473 H2 79I 57 A1D7G H7 H7 H 0 1 N N N N N N -12.199 19.161 0.773 5.865 2.937 3.023 H3 79I 58 A1D7G H4 H4 H 0 1 N N N N N N -9.252 18.656 1.396 5.795 3.790 0.825 H4 79I 59 A1D7G H5 H5 H 0 1 N N N N N N -9.994 19.974 0.426 6.951 2.452 0.517 H5 79I 60 A1D7G H3 H3 H 0 1 N N N N N N -10.433 18.584 -1.395 4.476 2.623 -0.747 H7 79I 61 A1D7G H28 H28 H 0 1 N N N N N N -7.875 19.769 -0.697 3.984 0.695 -2.157 H17 79I 62 A1D7G H29 H29 H 0 1 N N N N N N -8.539 17.055 -1.911 6.300 0.948 -1.215 H18 79I 63 A1D7G H30 H30 H 0 1 N N N N N N -7.920 17.309 -0.244 5.781 0.027 0.217 H19 79I 64 A1D7G H32 H32 H 0 1 N N N N N N -12.173 16.491 1.206 3.762 1.593 3.096 H34 79I 65 A1D7G H2 H2 H 0 1 N N N N N N -4.555 18.446 -1.214 4.908 -3.132 -2.347 H35 79I 66 A1D7G H1 H1 H 0 1 N N N N N N -8.487 19.075 -3.535 3.463 -0.623 0.396 H9 79I 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7G C20 C11 SING N N 1 A1D7G C21 C11 SING N N 2 A1D7G F3 C15 SING N N 3 A1D7G C11 C10 SING N N 4 A1D7G F1 C15 SING N N 5 A1D7G C15 F2 SING N N 6 A1D7G C15 C14 SING N N 7 A1D7G C10 C9 SING N N 8 A1D7G C14 O3 DOUB N N 9 A1D7G C14 N5 SING N N 10 A1D7G C9 N4 SING N N 11 A1D7G C9 C1 SING N N 12 A1D7G N4 C12 SING N N 13 A1D7G N5 C13 SING N N 14 A1D7G C12 O4 DOUB N N 15 A1D7G C12 C13 SING N N 16 A1D7G C13 C16 SING N N 17 A1D7G N1 C1 SING N N 18 A1D7G N1 C2 SING N N 19 A1D7G C1 O1 DOUB N N 20 A1D7G C8 C2 SING N N 21 A1D7G C8 N3 DOUB N N 22 A1D7G C2 C3 SING N N 23 A1D7G C16 C18 SING N N 24 A1D7G C16 C17 SING N N 25 A1D7G C16 C19 SING N N 26 A1D7G C3 C4 SING N N 27 A1D7G O2 C7 DOUB N N 28 A1D7G C4 C7 SING N N 29 A1D7G C4 C5 SING N N 30 A1D7G C7 N2 SING N N 31 A1D7G C5 C6 SING N N 32 A1D7G N2 C6 SING N N 33 A1D7G N1 H1 SING N N 34 A1D7G N3 H2 SING N N 35 A1D7G C4 H3 SING N N 36 A1D7G C5 H4 SING N N 37 A1D7G C5 H5 SING N N 38 A1D7G C6 H6 SING N N 39 A1D7G C6 H7 SING N N 40 A1D7G C8 H8 SING N N 41 A1D7G C10 H9 SING N N 42 A1D7G C10 H10 SING N N 43 A1D7G C13 H11 SING N N 44 A1D7G C17 H12 SING N N 45 A1D7G C17 H13 SING N N 46 A1D7G C17 H14 SING N N 47 A1D7G C20 H15 SING N N 48 A1D7G C20 H16 SING N N 49 A1D7G C20 H17 SING N N 50 A1D7G C21 H18 SING N N 51 A1D7G C21 H19 SING N N 52 A1D7G C21 H20 SING N N 53 A1D7G C11 H21 SING N N 54 A1D7G C18 H22 SING N N 55 A1D7G C18 H23 SING N N 56 A1D7G C18 H24 SING N N 57 A1D7G C19 H25 SING N N 58 A1D7G C19 H26 SING N N 59 A1D7G C19 H27 SING N N 60 A1D7G C2 H28 SING N N 61 A1D7G C3 H29 SING N N 62 A1D7G C3 H30 SING N N 63 A1D7G C9 H31 SING N N 64 A1D7G N2 H32 SING N N 65 A1D7G N4 H33 SING N N 66 A1D7G N5 H34 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7G InChI InChI 1.06 "InChI=1S/C21H34F3N5O4/c1-11(2)8-14(17(31)27-13(10-25)9-12-6-7-26-16(12)30)28-18(32)15(20(3,4)5)29-19(33)21(22,23)24/h10-15,25H,6-9H2,1-5H3,(H,26,30)(H,27,31)(H,28,32)(H,29,33)/b25-10+/t12-,13-,14-,15+/m0/s1" A1D7G InChIKey InChI 1.06 UQLZNORHIDZONY-GPRSWPIFSA-N A1D7G SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)C(F)(F)F)C(C)(C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N" A1D7G SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)C(F)(F)F)C(C)(C)C)C(=O)N[CH](C[CH]1CCNC1=O)C=N" A1D7G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F" A1D7G SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)C(C(C)(C)C)NC(=O)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1D7G _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]amino]-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7G "Create component" 2024-04-05 PDBC A1D7G "Modify PCM" 2024-09-27 PDBE A1D7G "Initial release" 2025-12-24 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D7G _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #