data_A1D7M # _chem_comp.id A1D7M _chem_comp.name "(2~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[(2~{S})-3,3-dimethyl-2-(methylsulfonylamino)butanoyl]amino]-4-methyl-pentanamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H37 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YXG _chem_comp.pdbx_subcomponent_list "03S TBG LEU 79I" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7M S1 S1 S 0 1 N N N N N N -15.264 21.854 -4.726 -5.316 -0.592 0.051 S10 03S 1 A1D7M O4 O4 O 0 1 N N N N N N -16.517 21.169 -4.850 -5.849 0.348 -0.871 O11 03S 2 A1D7M O5 O5 O 0 1 N N N N N N -15.264 23.244 -4.374 -6.097 -1.079 1.134 O12 03S 3 A1D7M C20 C10 C 0 1 N N N N N N -14.415 21.687 -6.253 -4.521 -1.966 -0.828 C13 03S 4 A1D7M N5 N5 N 0 1 N N N N N N -14.408 21.073 -3.597 -4.065 0.212 0.778 N TBG 5 A1D7M C15 C8 C 0 1 N N S N N N -13.212 21.692 -3.005 -3.022 0.836 -0.039 CA TBG 6 A1D7M C16 C15 C 0 1 N N N N N N -13.354 21.725 -1.453 -2.984 2.340 0.243 CB TBG 7 A1D7M C17 C9 C 0 1 N N N N N N -12.063 22.230 -0.804 -4.368 2.941 -0.006 CG1 TBG 8 A1D7M C18 C16 C 0 1 N N N N N N -14.496 22.668 -1.064 -2.580 2.574 1.700 CG2 TBG 9 A1D7M C19 C17 C 0 1 N N N N N N -13.667 20.328 -0.911 -1.964 3.007 -0.682 CG3 TBG 10 A1D7M C14 C14 C 0 1 N N N N N N -11.921 21.018 -3.460 -1.686 0.227 0.300 C TBG 11 A1D7M O3 O3 O 0 1 N N N N N N -11.836 19.793 -3.500 -1.544 -0.382 1.339 O TBG 12 A1D7M N4 N4 N 0 1 N N N N N N -10.921 21.828 -3.823 -0.649 0.360 -0.551 N LEU 13 A1D7M C9 C20 C 0 1 N N S N N N -9.576 21.320 -4.037 0.617 -0.324 -0.275 CA LEU 14 A1D7M C8 C5 C 0 1 N N N N N N -8.952 20.842 -2.724 1.744 0.414 -0.951 C LEU 15 A1D7M O2 O2 O 0 1 N N N N N N -8.854 21.606 -1.767 1.513 1.413 -1.599 O LEU 16 A1D7M C10 C6 C 0 1 N N N N N N -8.708 22.398 -4.683 0.550 -1.755 -0.812 CB LEU 17 A1D7M C11 C12 C 0 1 N N N N N N -8.580 22.322 -6.205 -0.511 -2.540 -0.039 CG LEU 18 A1D7M C13 C7 C 0 1 N N N N N N -8.506 23.717 -6.808 -0.665 -3.932 -0.656 CD1 LEU 19 A1D7M C12 C13 C 0 1 N N N N N N -9.735 21.545 -6.819 -0.081 -2.676 1.423 CD2 LEU 20 A1D7M C7 C4 C 0 1 N N N N N N -6.352 18.749 -1.953 4.223 0.217 -2.921 C16 79I 21 A1D7M C1 C11 C 0 1 N N N N N N -11.352 18.429 1.396 6.359 -0.582 2.166 C12 79I 22 A1D7M C4 C1 C 0 1 N N N N N N -10.649 16.793 -0.104 4.301 0.247 1.479 C14 79I 23 A1D7M C2 C18 C 0 1 N N N N N N -10.024 18.889 0.817 6.664 0.734 1.417 C11 79I 24 A1D7M C3 C19 C 0 1 N N S N N N -9.885 18.058 -0.451 5.339 0.981 0.659 C10 79I 25 A1D7M C6 C3 C 0 1 N N S N N N -7.788 19.044 -1.557 4.105 0.681 -1.492 C8 79I 26 A1D7M C5 C2 C 0 1 N N N N N N -8.470 17.803 -0.979 5.414 0.399 -0.754 C9 79I 27 A1D7M N2 N3 N 0 1 N N N N N N -8.526 19.574 -2.689 3.009 -0.036 -0.835 N7 79I 28 A1D7M N1 N1 N 0 1 N N N N N N -11.410 17.039 0.960 4.900 -0.618 2.319 N13 79I 29 A1D7M N3 N2 N 0 1 N N N N N N -5.436 18.460 -1.094 3.426 -0.676 -3.372 N17 79I 30 A1D7M O1 O1 O 0 1 N N N N N N -10.589 15.718 -0.724 3.103 0.415 1.393 O15 79I 31 A1D7M H16 H16 H 0 1 N N N N N N -13.446 22.203 -6.192 -5.280 -2.556 -1.342 H113 03S 32 A1D7M H17 H17 H 0 1 N N N N N N -14.250 20.621 -6.466 -3.814 -1.570 -1.557 H213 03S 33 A1D7M H18 H18 H 0 1 N N N N N N -15.018 22.132 -7.058 -3.992 -2.597 -0.114 H313 03S 34 A1D7M H37 H37 H 0 1 N N N N N N -15.036 20.883 -2.842 -4.023 0.270 1.746 H TBG 35 A1D7M H12 H12 H 0 1 N N N N N N -13.170 22.738 -3.344 -3.239 0.671 -1.094 HA TBG 36 A1D7M H13 H13 H 0 1 N N N N N N -12.183 22.246 0.289 -5.080 2.519 0.704 HG11 TBG 37 A1D7M H14 H14 H 0 1 N N N N N N -11.232 21.561 -1.072 -4.324 4.022 0.124 HG12 TBG 38 A1D7M H15 H15 H 0 1 N N N N N N -11.845 23.247 -1.164 -4.688 2.709 -1.022 HG13 TBG 39 A1D7M H25 H25 H 0 1 N N N N N N -14.596 22.691 0.031 -1.594 2.146 1.878 HG21 TBG 40 A1D7M H26 H26 H 0 1 N N N N N N -14.277 23.681 -1.434 -2.553 3.645 1.902 HG22 TBG 41 A1D7M H27 H27 H 0 1 N N N N N N -15.435 22.310 -1.510 -3.306 2.099 2.360 HG23 TBG 42 A1D7M H28 H28 H 0 1 N N N N N N -13.763 20.372 0.184 -2.259 2.852 -1.720 HG31 TBG 43 A1D7M H29 H29 H 0 1 N N N N N N -14.610 19.968 -1.348 -1.927 4.076 -0.471 HG32 TBG 44 A1D7M H30 H30 H 0 1 N N N N N N -12.852 19.640 -1.180 -0.980 2.569 -0.515 HG33 TBG 45 A1D7M H36 H36 H 0 1 N N N N N N -11.102 22.803 -3.950 -0.741 0.909 -1.345 H LEU 46 A1D7M H34 H34 H 0 1 N N N N N N -9.622 20.462 -4.724 0.791 -0.347 0.800 HA LEU 47 A1D7M H7 H7 H 0 1 N N N N N N -7.698 22.320 -4.255 0.289 -1.735 -1.870 HB2 LEU 48 A1D7M H8 H8 H 0 1 N N N N N N -9.140 23.377 -4.429 1.521 -2.235 -0.687 HB3 LEU 49 A1D7M H21 H21 H 0 1 N N N N N N -7.645 21.794 -6.444 -1.463 -2.013 -0.090 HG LEU 50 A1D7M H9 H9 H 0 1 N N N N N N -7.668 24.268 -6.356 0.287 -4.460 -0.604 HD11 LEU 51 A1D7M H10 H10 H 0 1 N N N N N N -8.351 23.639 -7.894 -1.421 -4.492 -0.105 HD12 LEU 52 A1D7M H11 H11 H 0 1 N N N N N N -9.446 24.252 -6.610 -0.972 -3.836 -1.697 HD13 LEU 53 A1D7M H22 H22 H 0 1 N N N N N N -9.778 20.539 -6.375 0.030 -1.684 1.863 HD21 LEU 54 A1D7M H23 H23 H 0 1 N N N N N N -10.679 22.074 -6.621 -0.837 -3.236 1.974 HD22 LEU 55 A1D7M H24 H24 H 0 1 N N N N N N -9.583 21.460 -7.905 0.872 -3.204 1.475 HD23 LEU 56 A1D7M H6 H6 H 0 1 N N N N N N -6.087 18.783 -2.999 4.982 0.639 -3.564 H1 79I 57 A1D7M H19 H19 H 0 1 N N N N N N -11.356 18.504 2.493 6.698 -1.436 1.580 H2 79I 58 A1D7M H20 H20 H 0 1 N N N N N N -12.190 19.012 0.985 6.841 -0.580 3.143 H3 79I 59 A1D7M H31 H31 H 0 1 N N N N N N -9.198 18.684 1.514 6.869 1.544 2.118 H4 79I 60 A1D7M H32 H32 H 0 1 N N N N N N -10.048 19.964 0.583 7.494 0.604 0.721 H5 79I 61 A1D7M H33 H33 H 0 1 N N N N N N -10.443 18.574 -1.246 5.113 2.046 0.622 H7 79I 62 A1D7M H5 H5 H 0 1 N N N N N N -7.766 19.808 -0.766 3.901 1.752 -1.474 H17 79I 63 A1D7M H3 H3 H 0 1 N N N N N N -8.528 17.041 -1.770 6.242 0.859 -1.293 H18 79I 64 A1D7M H4 H4 H 0 1 N N N N N N -7.854 17.425 -0.150 5.573 -0.678 -0.695 H19 79I 65 A1D7M H35 H35 H 0 1 N N N N N N -8.722 18.974 -3.465 3.194 -0.835 -0.317 H33 79I 66 A1D7M H1 H1 H 0 1 N N N N N N -11.965 16.342 1.414 4.428 -1.190 2.944 H34 79I 67 A1D7M H2 H2 H 0 1 N N N N N N -4.551 18.296 -1.531 3.502 -0.974 -4.292 H35 79I 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7M C12 C11 SING N N 1 A1D7M C13 C11 SING N N 2 A1D7M C20 S1 SING N N 3 A1D7M C11 C10 SING N N 4 A1D7M O4 S1 DOUB N N 5 A1D7M S1 O5 DOUB N N 6 A1D7M S1 N5 SING N N 7 A1D7M C10 C9 SING N N 8 A1D7M C9 N4 SING N N 9 A1D7M C9 C8 SING N N 10 A1D7M N4 C14 SING N N 11 A1D7M N5 C15 SING N N 12 A1D7M O3 C14 DOUB N N 13 A1D7M C14 C15 SING N N 14 A1D7M C15 C16 SING N N 15 A1D7M C8 N2 SING N N 16 A1D7M C8 O2 DOUB N N 17 A1D7M N2 C6 SING N N 18 A1D7M C7 C6 SING N N 19 A1D7M C7 N3 DOUB N N 20 A1D7M C6 C5 SING N N 21 A1D7M C16 C18 SING N N 22 A1D7M C16 C19 SING N N 23 A1D7M C16 C17 SING N N 24 A1D7M C5 C3 SING N N 25 A1D7M O1 C4 DOUB N N 26 A1D7M C3 C4 SING N N 27 A1D7M C3 C2 SING N N 28 A1D7M C4 N1 SING N N 29 A1D7M C2 C1 SING N N 30 A1D7M N1 C1 SING N N 31 A1D7M N1 H1 SING N N 32 A1D7M N3 H2 SING N N 33 A1D7M C5 H3 SING N N 34 A1D7M C5 H4 SING N N 35 A1D7M C6 H5 SING N N 36 A1D7M C7 H6 SING N N 37 A1D7M C10 H7 SING N N 38 A1D7M C10 H8 SING N N 39 A1D7M C13 H9 SING N N 40 A1D7M C13 H10 SING N N 41 A1D7M C13 H11 SING N N 42 A1D7M C15 H12 SING N N 43 A1D7M C17 H13 SING N N 44 A1D7M C17 H14 SING N N 45 A1D7M C17 H15 SING N N 46 A1D7M C20 H16 SING N N 47 A1D7M C20 H17 SING N N 48 A1D7M C20 H18 SING N N 49 A1D7M C1 H19 SING N N 50 A1D7M C1 H20 SING N N 51 A1D7M C11 H21 SING N N 52 A1D7M C12 H22 SING N N 53 A1D7M C12 H23 SING N N 54 A1D7M C12 H24 SING N N 55 A1D7M C18 H25 SING N N 56 A1D7M C18 H26 SING N N 57 A1D7M C18 H27 SING N N 58 A1D7M C19 H28 SING N N 59 A1D7M C19 H29 SING N N 60 A1D7M C19 H30 SING N N 61 A1D7M C2 H31 SING N N 62 A1D7M C2 H32 SING N N 63 A1D7M C3 H33 SING N N 64 A1D7M C9 H34 SING N N 65 A1D7M N2 H35 SING N N 66 A1D7M N4 H36 SING N N 67 A1D7M N5 H37 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7M InChI InChI 1.06 "InChI=1S/C20H37N5O5S/c1-12(2)9-15(24-19(28)16(20(3,4)5)25-31(6,29)30)18(27)23-14(11-21)10-13-7-8-22-17(13)26/h11-16,21,25H,7-10H2,1-6H3,(H,22,26)(H,23,27)(H,24,28)/b21-11+/t13-,14-,15-,16+/m0/s1" A1D7M InChIKey InChI 1.06 ZAOOYQOECLDTAP-ATAPGNLGSA-N A1D7M SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](N[S](C)(=O)=O)C(C)(C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N" A1D7M SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](N[S](C)(=O)=O)C(C)(C)C)C(=O)N[CH](C[CH]1CCNC1=O)C=N" A1D7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C(C)(C)C)NS(=O)(=O)C" A1D7M SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)C(C(C)(C)C)NS(=O)(=O)C" # _pdbx_chem_comp_identifier.comp_id A1D7M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[(2~{S})-3,3-dimethyl-2-(methylsulfonylamino)butanoyl]amino]-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7M "Create component" 2024-04-05 PDBC A1D7M "Modify PCM" 2024-09-27 PDBE A1D7M "Initial release" 2025-12-24 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D7M _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #