data_A1D7N # _chem_comp.id A1D7N _chem_comp.name "(1~{R},2~{S},5~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-(methylsulfonylamino)butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H37 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.625 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YXF _chem_comp.pdbx_subcomponent_list "03S TBG 12L 79I" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7N S1 S1 S 0 1 N N N N N N -14.753 21.733 -5.015 -5.017 -0.755 -0.850 S10 03S 1 A1D7N O4 O4 O 0 1 N N N N N N -14.680 23.152 -4.822 -5.688 -0.321 0.326 O11 03S 2 A1D7N O5 O5 O 0 1 N N N N N N -16.045 21.111 -5.049 -5.549 -1.800 -1.653 O12 03S 3 A1D7N C22 C12 C 0 1 N N N N N N -13.921 21.347 -6.512 -4.553 0.665 -1.879 C13 03S 4 A1D7N N5 N5 N 0 1 N N N N N N -13.940 21.045 -3.798 -3.576 -1.355 -0.299 N TBG 5 A1D7N C4 C1 C 0 1 N N S N N N -12.724 21.668 -3.260 -2.734 -0.545 0.584 CA TBG 6 A1D7N C2 C20 C 0 1 N N N N N N -12.822 21.691 -1.723 -2.665 -1.200 1.965 CB TBG 7 A1D7N C21 C11 C 0 1 N N N N N N -14.046 22.506 -1.300 -2.090 -2.612 1.831 CG1 TBG 8 A1D7N C1 C13 C 0 1 N N N N N N -11.574 22.327 -1.103 -1.765 -0.368 2.880 CG2 TBG 9 A1D7N C3 C21 C 0 1 N N N N N N -12.975 20.271 -1.169 -4.070 -1.277 2.564 CG3 TBG 10 A1D7N C5 C2 C 0 1 N N N N N N -11.458 20.970 -3.758 -1.346 -0.446 0.005 C TBG 11 A1D7N O3 O3 O 0 1 N N N N N N -11.396 19.750 -3.847 -0.900 -1.358 -0.659 O TBG 12 A1D7N N1 N1 N 0 1 N N N N N N -10.412 21.731 -4.117 -0.601 0.656 0.225 N19 12L 13 A1D7N C6 C3 C 0 1 N N N N N N -10.392 23.189 -4.295 -0.923 1.812 1.093 C20 12L 14 A1D7N C8 C5 C 0 1 N N S N N N -9.115 21.087 -4.332 0.728 0.982 -0.343 C21 12L 15 A1D7N C17 C9 C 0 1 N N R N N N -8.252 22.171 -4.949 0.660 2.493 -0.649 C22 12L 16 A1D7N C7 C4 C 0 1 N N S N N N -9.038 23.468 -4.920 -0.432 3.043 0.301 C23 12L 17 A1D7N C18 C18 C 0 1 N N N N N N -8.661 22.843 -6.240 -0.644 3.055 -1.217 C24 12L 18 A1D7N C20 C10 C 0 1 N N N N N N -9.738 22.234 -7.113 -1.650 2.057 -1.796 C25 12L 19 A1D7N C19 C19 C 0 1 N N N N N N -7.574 23.523 -7.043 -0.579 4.410 -1.926 C26 12L 20 A1D7N C9 C22 C 0 1 N N N N N N -8.509 20.629 -3.011 1.813 0.697 0.664 C27 12L 21 A1D7N O2 O2 O 0 1 N N N N N N -8.421 21.396 -2.053 1.536 0.591 1.840 O28 12L 22 A1D7N C11 C14 C 0 1 N N N N N N -5.947 18.541 -2.121 4.626 1.581 1.835 C16 79I 23 A1D7N C15 C8 C 0 1 N N N N N N -10.778 18.306 1.255 5.824 -2.158 -2.122 C12 79I 24 A1D7N C16 C17 C 0 1 N N N N N N -10.210 16.604 -0.229 3.826 -1.638 -1.057 C14 79I 25 A1D7N C14 C16 C 0 1 N N N N N N -9.495 18.722 0.553 6.027 -2.538 -0.638 C11 79I 26 A1D7N C13 C7 C 0 1 N N S N N N -9.478 17.849 -0.693 4.855 -1.791 0.041 C10 79I 27 A1D7N C10 C6 C 0 1 N N S N N N -7.404 18.824 -1.810 4.145 0.285 1.235 C8 79I 28 A1D7N C12 C15 C 0 1 N N N N N N -8.107 17.563 -1.305 5.312 -0.420 0.542 C9 79I 29 A1D7N N2 N3 N 0 1 N N N N N N -8.081 19.362 -2.975 3.090 0.561 0.257 N7 79I 30 A1D7N N4 N4 N 0 1 N N N N N N -10.890 16.902 0.877 4.395 -1.855 -2.258 N13 79I 31 A1D7N N3 N2 N 0 1 N N N N N N -5.109 18.282 -1.176 4.109 2.690 1.461 N17 79I 32 A1D7N O1 O1 O 0 1 N N N N N N -10.193 15.501 -0.799 2.659 -1.362 -0.881 O15 79I 33 A1D7N H18 H18 H 0 1 N N N N N N -12.925 21.814 -6.510 -4.015 1.393 -1.272 H113 03S 34 A1D7N H19 H19 H 0 1 N N N N N N -13.814 20.256 -6.601 -3.914 0.329 -2.695 H213 03S 35 A1D7N H20 H20 H 0 1 N N N N N N -14.503 21.729 -7.364 -5.452 1.127 -2.287 H313 03S 36 A1D7N H37 H37 H 0 1 N N N N N N -14.582 20.966 -3.035 -3.288 -2.244 -0.562 H2 TBG 37 A1D7N H2 H2 H 0 1 N N N N N N -12.687 22.712 -3.605 -3.161 0.454 0.677 HA TBG 38 A1D7N H15 H15 H 0 1 N N N N N N -14.115 22.522 -0.202 -1.088 -2.557 1.404 HG11 TBG 39 A1D7N H16 H16 H 0 1 N N N N N N -13.949 23.535 -1.676 -2.040 -3.079 2.815 HG12 TBG 40 A1D7N H17 H17 H 0 1 N N N N N N -14.954 22.047 -1.718 -2.731 -3.205 1.179 HG13 TBG 41 A1D7N H21 H21 H 0 1 N N N N N N -11.670 22.331 -0.007 -2.150 0.650 2.941 HG21 TBG 42 A1D7N H22 H22 H 0 1 N N N N N N -10.685 21.747 -1.391 -1.751 -0.810 3.876 HG22 TBG 43 A1D7N H23 H23 H 0 1 N N N N N N -11.471 23.360 -1.466 -0.753 -0.350 2.476 HG23 TBG 44 A1D7N H32 H32 H 0 1 N N N N N N -13.043 20.310 -0.072 -4.686 -1.945 1.962 HG31 TBG 45 A1D7N H33 H33 H 0 1 N N N N N N -13.889 19.815 -1.577 -4.011 -1.658 3.584 HG32 TBG 46 A1D7N H34 H34 H 0 1 N N N N N N -12.103 19.668 -1.461 -4.516 -0.282 2.574 HG33 TBG 47 A1D7N H3 H3 H 0 1 N N N N N N -10.488 23.702 -3.327 -1.998 1.873 1.262 H26 12L 48 A1D7N H4 H4 H 0 1 N N N N N N -11.204 23.512 -4.963 -0.394 1.733 2.042 H27 12L 49 A1D7N H6 H6 H 0 1 N N N N N N -9.207 20.235 -5.022 0.900 0.414 -1.257 H28 12L 50 A1D7N H11 H11 H 0 1 N N N N N N -7.190 22.207 -4.663 1.601 3.020 -0.809 H29 12L 51 A1D7N H5 H5 H 0 1 N N N N N N -8.509 24.382 -4.612 -0.302 3.977 0.846 H30 12L 52 A1D7N H12 H12 H 0 1 N N N N N N -10.498 21.756 -6.478 -1.952 1.355 -1.019 H31 12L 53 A1D7N H13 H13 H 0 1 N N N N N N -10.209 23.023 -7.718 -2.525 2.594 -2.161 H32 12L 54 A1D7N H14 H14 H 0 1 N N N N N N -9.289 21.481 -7.778 -1.188 1.512 -2.619 H33 12L 55 A1D7N H29 H29 H 0 1 N N N N N N -6.822 23.945 -6.360 0.100 4.343 -2.776 H34 12L 56 A1D7N H30 H30 H 0 1 N N N N N N -7.095 22.788 -7.707 -1.574 4.684 -2.277 H35 12L 57 A1D7N H31 H31 H 0 1 N N N N N N -8.015 24.330 -7.647 -0.218 5.167 -1.230 H36 12L 58 A1D7N H24 H24 H 0 1 N N N N N N -5.607 18.557 -3.146 5.407 1.574 2.581 H1 79I 59 A1D7N H9 H9 H 0 1 N N N N N N -10.692 18.420 2.346 6.422 -1.282 -2.372 H2 79I 60 A1D7N H10 H10 H 0 1 N N N N N N -11.638 18.887 0.892 6.095 -2.995 -2.765 H3 79I 61 A1D7N H27 H27 H 0 1 N N N N N N -8.617 18.523 1.186 5.939 -3.615 -0.495 H4 79I 62 A1D7N H28 H28 H 0 1 N N N N N N -9.520 19.789 0.286 6.987 -2.175 -0.270 H5 79I 63 A1D7N H8 H8 H 0 1 N N N N N N -10.095 18.340 -1.460 4.451 -2.383 0.863 H7 79I 64 A1D7N H7 H7 H 0 1 N N N N N N -7.438 19.572 -1.004 3.751 -0.356 2.024 H17 79I 65 A1D7N H25 H25 H 0 1 N N N N N N -8.238 16.872 -2.151 6.133 -0.546 1.248 H18 79I 66 A1D7N H26 H26 H 0 1 N N N N N N -7.473 17.091 -0.540 5.650 0.181 -0.303 H19 79I 67 A1D7N H35 H35 H 0 1 N N N N N N -8.231 18.773 -3.769 3.312 0.646 -0.684 H33 79I 68 A1D7N H36 H36 H 0 1 N N N N N N -11.422 16.232 1.395 3.921 -1.815 -3.103 H34 79I 69 A1D7N H1 H1 H 0 1 N N N N N N -4.188 18.116 -1.527 4.418 3.524 1.847 H35 79I 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7N C20 C18 SING N N 1 A1D7N C19 C18 SING N N 2 A1D7N C22 S1 SING N N 3 A1D7N C18 C17 SING N N 4 A1D7N C18 C7 SING N N 5 A1D7N O5 S1 DOUB N N 6 A1D7N S1 O4 DOUB N N 7 A1D7N S1 N5 SING N N 8 A1D7N C17 C7 SING N N 9 A1D7N C17 C8 SING N N 10 A1D7N C7 C6 SING N N 11 A1D7N C8 N1 SING N N 12 A1D7N C8 C9 SING N N 13 A1D7N C6 N1 SING N N 14 A1D7N N1 C5 SING N N 15 A1D7N O3 C5 DOUB N N 16 A1D7N N5 C4 SING N N 17 A1D7N C5 C4 SING N N 18 A1D7N C4 C2 SING N N 19 A1D7N C9 N2 SING N N 20 A1D7N C9 O2 DOUB N N 21 A1D7N N2 C10 SING N N 22 A1D7N C11 C10 SING N N 23 A1D7N C11 N3 DOUB N N 24 A1D7N C10 C12 SING N N 25 A1D7N C2 C21 SING N N 26 A1D7N C2 C3 SING N N 27 A1D7N C2 C1 SING N N 28 A1D7N C12 C13 SING N N 29 A1D7N O1 C16 DOUB N N 30 A1D7N C13 C16 SING N N 31 A1D7N C13 C14 SING N N 32 A1D7N C16 N4 SING N N 33 A1D7N C14 C15 SING N N 34 A1D7N N4 C15 SING N N 35 A1D7N N3 H1 SING N N 36 A1D7N C4 H2 SING N N 37 A1D7N C6 H3 SING N N 38 A1D7N C6 H4 SING N N 39 A1D7N C7 H5 SING N N 40 A1D7N C8 H6 SING N N 41 A1D7N C10 H7 SING N N 42 A1D7N C13 H8 SING N N 43 A1D7N C15 H9 SING N N 44 A1D7N C15 H10 SING N N 45 A1D7N C17 H11 SING N N 46 A1D7N C20 H12 SING N N 47 A1D7N C20 H13 SING N N 48 A1D7N C20 H14 SING N N 49 A1D7N C21 H15 SING N N 50 A1D7N C21 H16 SING N N 51 A1D7N C21 H17 SING N N 52 A1D7N C22 H18 SING N N 53 A1D7N C22 H19 SING N N 54 A1D7N C22 H20 SING N N 55 A1D7N C1 H21 SING N N 56 A1D7N C1 H22 SING N N 57 A1D7N C1 H23 SING N N 58 A1D7N C11 H24 SING N N 59 A1D7N C12 H25 SING N N 60 A1D7N C12 H26 SING N N 61 A1D7N C14 H27 SING N N 62 A1D7N C14 H28 SING N N 63 A1D7N C19 H29 SING N N 64 A1D7N C19 H30 SING N N 65 A1D7N C19 H31 SING N N 66 A1D7N C3 H32 SING N N 67 A1D7N C3 H33 SING N N 68 A1D7N C3 H34 SING N N 69 A1D7N N2 H35 SING N N 70 A1D7N N4 H36 SING N N 71 A1D7N N5 H37 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7N InChI InChI 1.06 "InChI=1S/C22H37N5O5S/c1-21(2,3)17(26-33(6,31)32)20(30)27-11-14-15(22(14,4)5)16(27)19(29)25-13(10-23)9-12-7-8-24-18(12)28/h10,12-17,23,26H,7-9,11H2,1-6H3,(H,24,28)(H,25,29)/b23-10+/t12-,13-,14-,15-,16-,17+/m0/s1" A1D7N InChIKey InChI 1.06 WKNNEQQNQXXQHC-CFDPTBGNSA-N A1D7N SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](N[S](C)(=O)=O)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N)C2(C)C" A1D7N SMILES CACTVS 3.385 "CC(C)(C)[CH](N[S](C)(=O)=O)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)C=N)C2(C)C" A1D7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NS(=O)(=O)C" A1D7N SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NS(=O)(=O)C)C(=O)NC(CC3CCNC3=O)C=N)C" # _pdbx_chem_comp_identifier.comp_id A1D7N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},5~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-(methylsulfonylamino)butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7N "Create component" 2024-04-05 PDBC A1D7N "Modify PCM" 2024-09-27 PDBE A1D7N "Initial release" 2025-12-24 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D7N _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #