data_A1D7O # _chem_comp.id A1D7O _chem_comp.name "(4~{R})-4-methyl-1-(phenylmethyl)piperidin-3-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-06 _chem_comp.pdbx_modified_date 2025-07-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YXY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7O CAD C1 C 0 1 N N N N N N 8.644 8.002 24.953 -1.742 1.640 -0.108 CAD A1D7O 1 A1D7O CAA C2 C 0 1 N N N N N N 9.725 7.511 24.057 -2.842 1.133 0.828 CAA A1D7O 2 A1D7O CAN C3 C 0 1 N N R N N N 10.830 8.522 24.083 -3.250 -0.283 0.403 CAN A1D7O 3 A1D7O CAO C4 C 0 1 N N N N N N 12.003 8.039 23.225 -3.938 -0.235 -0.963 CAO A1D7O 4 A1D7O C C5 C 0 1 N N N N N N 10.309 9.746 23.646 -1.997 -1.128 0.316 C A1D7O 5 A1D7O O O1 O 0 1 N N N N N N 11.063 10.672 23.394 -1.939 -2.211 0.848 O A1D7O 6 A1D7O CA C6 C 0 1 N N N N N N 8.940 9.916 23.445 -0.820 -0.575 -0.456 CA A1D7O 7 A1D7O N N1 N 0 1 N N N N N N 8.052 9.239 24.415 -0.552 0.790 0.017 N A1D7O 8 A1D7O CAG C7 C 0 1 N N N N N N 6.651 9.248 23.900 0.590 1.379 -0.695 CAG A1D7O 9 A1D7O CAH C8 C 0 1 Y N N N N N 6.091 8.145 23.246 1.846 0.625 -0.342 CAH A1D7O 10 A1D7O CAI C9 C 0 1 Y N N N N N 5.327 8.436 22.110 2.608 1.019 0.742 CAI A1D7O 11 A1D7O CAJ C10 C 0 1 Y N N N N N 4.715 7.399 21.425 3.757 0.324 1.068 CAJ A1D7O 12 A1D7O CAK C11 C 0 1 Y N N N N N 4.841 6.072 21.843 4.144 -0.766 0.311 CAK A1D7O 13 A1D7O CAL C12 C 0 1 Y N N N N N 5.579 5.760 22.973 3.382 -1.161 -0.772 CAL A1D7O 14 A1D7O CAM C13 C 0 1 Y N N N N N 6.194 6.801 23.671 2.233 -0.465 -1.099 CAM A1D7O 15 A1D7O H1 H1 H 0 1 N N N N N N 7.863 7.232 25.034 -2.101 1.611 -1.137 H1 A1D7O 16 A1D7O H2 H2 H 0 1 N N N N N N 9.064 8.205 25.949 -1.485 2.665 0.157 H2 A1D7O 17 A1D7O H3 H3 H 0 1 N N N N N N 9.341 7.401 23.032 -2.468 1.113 1.852 H3 A1D7O 18 A1D7O H4 H4 H 0 1 N N N N N N 10.097 6.540 24.415 -3.706 1.795 0.766 H4 A1D7O 19 A1D7O H5 H5 H 0 1 N N N N N N 11.186 8.620 25.119 -3.930 -0.707 1.143 H5 A1D7O 20 A1D7O H6 H6 H 0 1 N N N N N N 12.370 7.077 23.613 -3.251 0.179 -1.701 H6 A1D7O 21 A1D7O H7 H7 H 0 1 N N N N N N 11.668 7.911 22.185 -4.226 -1.243 -1.260 H7 A1D7O 22 A1D7O H8 H8 H 0 1 N N N N N N 12.813 8.782 23.260 -4.826 0.394 -0.900 H8 A1D7O 23 A1D7O H9 H9 H 0 1 N N N N N N 8.725 10.994 23.488 0.057 -1.201 -0.285 H9 A1D7O 24 A1D7O H10 H10 H 0 1 N N N N N N 8.697 9.533 22.443 -1.056 -0.555 -1.520 H10 A1D7O 25 A1D7O H12 H12 H 0 1 N N N N N N 6.589 10.088 23.193 0.419 1.318 -1.770 H12 A1D7O 26 A1D7O H13 H13 H 0 1 N N N N N N 6.006 9.451 24.768 0.700 2.424 -0.404 H13 A1D7O 27 A1D7O H14 H14 H 0 1 N N N N N N 5.216 9.456 21.772 2.305 1.871 1.333 H14 A1D7O 28 A1D7O H15 H15 H 0 1 N N N N N N 4.127 7.622 20.547 4.353 0.632 1.915 H15 A1D7O 29 A1D7O H16 H16 H 0 1 N N N N N N 4.360 5.285 21.282 5.042 -1.309 0.566 H16 A1D7O 30 A1D7O H17 H17 H 0 1 N N N N N N 5.676 4.737 23.306 3.684 -2.013 -1.363 H17 A1D7O 31 A1D7O H18 H18 H 0 1 N N N N N N 6.764 6.573 24.560 1.635 -0.776 -1.943 H18 A1D7O 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7O CAJ CAK DOUB Y N 1 A1D7O CAJ CAI SING Y N 2 A1D7O CAK CAL SING Y N 3 A1D7O CAI CAH DOUB Y N 4 A1D7O CAL CAM DOUB Y N 5 A1D7O CAO CAN SING N N 6 A1D7O CAH CAM SING Y N 7 A1D7O CAH CAG SING N N 8 A1D7O O C DOUB N N 9 A1D7O CA C SING N N 10 A1D7O CA N SING N N 11 A1D7O C CAN SING N N 12 A1D7O CAG N SING N N 13 A1D7O CAA CAN SING N N 14 A1D7O CAA CAD SING N N 15 A1D7O N CAD SING N N 16 A1D7O CAD H1 SING N N 17 A1D7O CAD H2 SING N N 18 A1D7O CAA H3 SING N N 19 A1D7O CAA H4 SING N N 20 A1D7O CAN H5 SING N N 21 A1D7O CAO H6 SING N N 22 A1D7O CAO H7 SING N N 23 A1D7O CAO H8 SING N N 24 A1D7O CA H9 SING N N 25 A1D7O CA H10 SING N N 26 A1D7O CAG H12 SING N N 27 A1D7O CAG H13 SING N N 28 A1D7O CAI H14 SING N N 29 A1D7O CAJ H15 SING N N 30 A1D7O CAK H16 SING N N 31 A1D7O CAL H17 SING N N 32 A1D7O CAM H18 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7O InChI InChI 1.06 "InChI=1S/C13H17NO/c1-11-7-8-14(10-13(11)15)9-12-5-3-2-4-6-12/h2-6,11H,7-10H2,1H3/t11-/m1/s1" A1D7O InChIKey InChI 1.06 BSBVJNUGGBQEPO-LLVKDONJSA-N A1D7O SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CCN(CC1=O)Cc2ccccc2" A1D7O SMILES CACTVS 3.385 "C[CH]1CCN(CC1=O)Cc2ccccc2" A1D7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CCN(CC1=O)Cc2ccccc2" A1D7O SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCN(CC1=O)Cc2ccccc2" # _pdbx_chem_comp_identifier.comp_id A1D7O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-4-methyl-1-(phenylmethyl)piperidin-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7O "Create component" 2024-04-06 PDBC A1D7O "Initial release" 2025-07-09 RCSB #