data_A1D7P # _chem_comp.id A1D7P _chem_comp.name "(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H37 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "leukotriene E4" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-09 _chem_comp.pdbx_modified_date 2025-05-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YYX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7P C13 C1 C 0 1 N N N N N N 151.745 136.445 150.955 6.415 -2.623 0.275 C13 A1D7P 1 A1D7P C17 C2 C 0 1 N N N N N N 147.979 133.075 153.653 1.482 -1.325 -1.100 C17 A1D7P 2 A1D7P C20 C3 C 0 1 N N N N N N 146.705 131.820 156.961 -1.995 -2.400 -0.950 C20 A1D7P 3 A1D7P C21 C4 C 0 1 N N N N N N 145.647 132.578 157.795 -2.805 -3.617 -1.048 C21 A1D7P 4 A1D7P C22 C5 C 0 1 N N N N N N 144.875 132.736 158.888 -4.121 -3.559 -0.842 C22 A1D7P 5 A1D7P C24 C6 C 0 1 N N N N N N 145.554 132.674 161.286 -5.937 -2.120 -1.670 C24 A1D7P 6 A1D7P C26 C7 C 0 1 N N N N N N 144.629 130.913 162.783 -7.365 -1.433 0.187 C26 A1D7P 7 A1D7P C28 C8 C 0 1 N N N N N N 145.991 129.649 164.563 -8.321 0.305 1.706 C28 A1D7P 8 A1D7P C01 C9 C 0 1 N N N N N N 148.924 130.091 148.455 2.575 5.196 -0.353 C01 A1D7P 9 A1D7P O02 O1 O 0 1 N N N N N N 149.552 131.184 148.422 3.493 5.419 0.600 O02 A1D7P 10 A1D7P O03 O2 O 0 1 N N N N N N 148.997 129.315 147.469 2.495 5.942 -1.301 O03 A1D7P 11 A1D7P C04 C10 C 0 1 N N R N N N 148.088 129.686 149.673 1.645 4.016 -0.242 C04 A1D7P 12 A1D7P N05 N1 N 0 1 N N N N N N 148.948 129.017 150.629 0.467 4.239 -1.092 N05 A1D7P 13 A1D7P C06 C11 C 0 1 N N N N N N 147.457 130.881 150.393 2.371 2.749 -0.698 C06 A1D7P 14 A1D7P S07 S1 S 0 1 N N N N N N 148.028 131.002 152.132 1.250 1.329 -0.564 S07 A1D7P 15 A1D7P C08 C12 C 0 1 N N R N N N 148.945 132.520 152.586 2.315 -0.073 -0.999 C08 A1D7P 16 A1D7P C09 C13 C 0 1 N N S N N N 149.398 133.348 151.370 3.383 -0.257 0.081 C09 A1D7P 17 A1D7P O10 O3 O 0 1 N N N N N N 148.293 133.678 150.595 2.753 -0.556 1.328 O10 A1D7P 18 A1D7P C11 C14 C 0 1 N N N N N N 150.126 134.625 151.868 4.311 -1.409 -0.310 C11 A1D7P 19 A1D7P C12 C15 C 0 1 N N N N N N 151.515 134.944 151.250 5.487 -1.471 0.666 C12 A1D7P 20 A1D7P C14 C16 C 0 1 N N N N N N 152.483 136.639 149.616 7.573 -2.684 1.237 C14 A1D7P 21 A1D7P O15 O4 O 0 1 N N N N N N 153.421 135.860 149.291 8.521 -3.623 1.088 O15 A1D7P 22 A1D7P O16 O5 O 0 1 N N N N N N 152.164 137.578 148.843 7.649 -1.888 2.143 O16 A1D7P 23 A1D7P C18 C17 C 0 1 N N N N N N 147.563 132.610 154.853 0.157 -1.255 -0.977 C18 A1D7P 24 A1D7P C19 C18 C 0 1 N N N N N N 146.656 132.898 156.036 -0.653 -2.471 -1.075 C19 A1D7P 25 A1D7P C23 C19 C 0 1 N N N N N N 144.405 132.326 160.314 -4.801 -2.224 -0.685 C23 A1D7P 26 A1D7P C25 C20 C 0 1 N N N N N N 145.664 132.011 162.456 -7.142 -1.821 -1.252 C25 A1D7P 27 A1D7P C27 C21 C 0 1 N N N N N N 145.377 129.597 163.138 -8.094 -0.089 0.245 C27 A1D7P 28 A1D7P C29 C22 C 0 1 N N N N N N 146.943 128.455 164.834 -9.051 1.649 1.765 C29 A1D7P 29 A1D7P C30 C23 C 0 1 N N N N N N 148.128 128.842 165.747 -9.277 2.043 3.226 C30 A1D7P 30 A1D7P H1 H1 H 0 1 N N N N N N 152.348 136.882 151.764 5.863 -3.562 0.311 H1 A1D7P 31 A1D7P H2 H2 H 0 1 N N N N N N 150.772 136.955 150.906 6.790 -2.460 -0.735 H2 A1D7P 32 A1D7P H3 H3 H 0 1 N N N N N N 147.547 134.029 153.388 1.959 -2.279 -1.272 H3 A1D7P 33 A1D7P H4 H4 H 0 1 N N N N N N 147.242 130.887 157.044 -2.471 -1.447 -0.778 H4 A1D7P 34 A1D7P H6 H6 H 0 1 N N N N N N 145.393 133.427 157.177 -2.336 -4.560 -1.286 H6 A1D7P 35 A1D7P H7 H7 H 0 1 N N N N N N 144.264 133.594 158.651 -4.699 -4.470 -0.789 H7 A1D7P 36 A1D7P H8 H8 H 0 1 N N N N N N 146.266 133.445 161.030 -5.757 -2.291 -2.721 H8 A1D7P 37 A1D7P H9 H9 H 0 1 N N N N N N 144.014 131.229 163.639 -7.968 -2.195 0.680 H9 A1D7P 38 A1D7P H10 H10 H 0 1 N N N N N N 143.982 130.745 161.909 -6.404 -1.347 0.694 H10 A1D7P 39 A1D7P H11 H11 H 0 1 N N N N N N 146.558 130.586 164.671 -8.925 -0.458 2.199 H11 A1D7P 40 A1D7P H12 H12 H 0 1 N N N N N N 145.176 129.627 165.301 -7.360 0.391 2.213 H12 A1D7P 41 A1D7P H13 H13 H 0 1 N N N N N N 150.017 131.258 147.597 4.068 6.189 0.485 H13 A1D7P 42 A1D7P H14 H14 H 0 1 N N N N N N 147.289 129.005 149.345 1.327 3.900 0.795 H14 A1D7P 43 A1D7P H15 H15 H 0 1 N N N N N N 148.412 128.748 151.429 -0.065 5.034 -0.771 H15 A1D7P 44 A1D7P H16 H16 H 0 1 N N N N N N 149.347 128.203 150.206 0.735 4.350 -2.058 H16 A1D7P 45 A1D7P H18 H18 H 0 1 N N N N N N 147.733 131.804 149.862 2.688 2.865 -1.734 H18 A1D7P 46 A1D7P H19 H19 H 0 1 N N N N N N 146.363 130.766 150.384 3.244 2.584 -0.067 H19 A1D7P 47 A1D7P H20 H20 H 0 1 N N N N N N 149.847 132.161 153.104 2.797 0.120 -1.957 H20 A1D7P 48 A1D7P H21 H21 H 0 1 N N N N N N 150.113 132.748 150.787 3.964 0.660 0.178 H21 A1D7P 49 A1D7P H22 H22 H 0 1 N N N N N N 147.863 132.883 150.301 2.218 -1.362 1.315 H22 A1D7P 50 A1D7P H23 H23 H 0 1 N N N N N N 150.264 134.523 152.955 3.759 -2.349 -0.275 H23 A1D7P 51 A1D7P H24 H24 H 0 1 N N N N N N 149.468 135.482 151.660 4.687 -1.247 -1.321 H24 A1D7P 52 A1D7P H25 H25 H 0 1 N N N N N N 151.609 134.388 150.306 5.112 -1.634 1.677 H25 A1D7P 53 A1D7P H26 H26 H 0 1 N N N N N N 152.291 134.607 151.953 6.039 -0.532 0.631 H26 A1D7P 54 A1D7P H27 H27 H 0 1 N N N N N N 153.771 136.120 148.447 9.244 -3.622 1.730 H27 A1D7P 55 A1D7P H28 H28 H 0 1 N N N N N N 148.071 131.676 155.042 -0.320 -0.301 -0.804 H28 A1D7P 56 A1D7P H29 H29 H 0 1 N N N N N N 146.061 133.791 156.157 -0.177 -3.425 -1.247 H29 A1D7P 57 A1D7P H31 H31 H 0 1 N N N N N N 143.497 132.884 160.587 -5.190 -2.132 0.329 H31 A1D7P 58 A1D7P H32 H32 H 0 1 N N N N N N 144.196 131.247 160.347 -4.083 -1.426 -0.872 H32 A1D7P 59 A1D7P H33 H33 H 0 1 N N N N N N 146.459 132.243 163.149 -7.975 -1.853 -1.938 H33 A1D7P 60 A1D7P H34 H34 H 0 1 N N N N N N 144.667 128.759 163.087 -7.491 0.673 -0.247 H34 A1D7P 61 A1D7P H35 H35 H 0 1 N N N N N N 146.184 129.438 162.408 -9.056 -0.175 -0.261 H35 A1D7P 62 A1D7P H36 H36 H 0 1 N N N N N N 146.371 127.650 165.319 -8.447 2.411 1.272 H36 A1D7P 63 A1D7P H37 H37 H 0 1 N N N N N N 147.340 128.095 163.874 -10.012 1.562 1.258 H37 A1D7P 64 A1D7P H38 H38 H 0 1 N N N N N N 148.770 127.963 165.907 -9.797 3.000 3.267 H38 A1D7P 65 A1D7P H39 H39 H 0 1 N N N N N N 148.713 129.641 165.269 -9.881 1.280 3.718 H39 A1D7P 66 A1D7P H40 H40 H 0 1 N N N N N N 147.744 129.197 166.715 -8.316 2.129 3.732 H40 A1D7P 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7P O03 C01 DOUB N N 1 A1D7P O02 C01 SING N N 2 A1D7P C01 C04 SING N N 3 A1D7P O16 C14 DOUB N N 4 A1D7P O15 C14 SING N N 5 A1D7P C14 C13 SING N N 6 A1D7P C04 C06 SING N N 7 A1D7P C04 N05 SING N N 8 A1D7P C06 S07 SING N N 9 A1D7P O10 C09 SING N N 10 A1D7P C13 C12 SING N N 11 A1D7P C12 C11 SING N N 12 A1D7P C09 C11 SING N N 13 A1D7P C09 C08 SING N N 14 A1D7P S07 C08 SING N N 15 A1D7P C08 C17 SING N N 16 A1D7P C17 C18 DOUB N E 17 A1D7P C18 C19 SING N N 18 A1D7P C19 C20 DOUB N E 19 A1D7P C20 C21 SING N N 20 A1D7P C21 C22 DOUB N Z 21 A1D7P C22 C23 SING N N 22 A1D7P C23 C24 SING N N 23 A1D7P C24 C25 DOUB N Z 24 A1D7P C25 C26 SING N N 25 A1D7P C26 C27 SING N N 26 A1D7P C27 C28 SING N N 27 A1D7P C28 C29 SING N N 28 A1D7P C29 C30 SING N N 29 A1D7P C13 H1 SING N N 30 A1D7P C13 H2 SING N N 31 A1D7P C17 H3 SING N N 32 A1D7P C20 H4 SING N N 33 A1D7P C21 H6 SING N N 34 A1D7P C22 H7 SING N N 35 A1D7P C24 H8 SING N N 36 A1D7P C26 H9 SING N N 37 A1D7P C26 H10 SING N N 38 A1D7P C28 H11 SING N N 39 A1D7P C28 H12 SING N N 40 A1D7P O02 H13 SING N N 41 A1D7P C04 H14 SING N N 42 A1D7P N05 H15 SING N N 43 A1D7P N05 H16 SING N N 44 A1D7P C06 H18 SING N N 45 A1D7P C06 H19 SING N N 46 A1D7P C08 H20 SING N N 47 A1D7P C09 H21 SING N N 48 A1D7P O10 H22 SING N N 49 A1D7P C11 H23 SING N N 50 A1D7P C11 H24 SING N N 51 A1D7P C12 H25 SING N N 52 A1D7P C12 H26 SING N N 53 A1D7P O15 H27 SING N N 54 A1D7P C18 H28 SING N N 55 A1D7P C19 H29 SING N N 56 A1D7P C23 H31 SING N N 57 A1D7P C23 H32 SING N N 58 A1D7P C25 H33 SING N N 59 A1D7P C27 H34 SING N N 60 A1D7P C27 H35 SING N N 61 A1D7P C29 H36 SING N N 62 A1D7P C29 H37 SING N N 63 A1D7P C30 H38 SING N N 64 A1D7P C30 H39 SING N N 65 A1D7P C30 H40 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7P InChI InChI 1.06 "InChI=1S/C23H37NO5S/c1-2-3-4-5-6-7-8-9-10-11-12-13-16-21(30-18-19(24)23(28)29)20(25)15-14-17-22(26)27/h6-7,9-13,16,19-21,25H,2-5,8,14-15,17-18,24H2,1H3,(H,26,27)(H,28,29)/b7-6-,10-9-,12-11+,16-13+/t19-,20-,21+/m0/s1" A1D7P InChIKey InChI 1.06 OTZRAYGBFWZKMX-FRFVZSDQSA-N A1D7P SMILES_CANONICAL CACTVS 3.385 "CCCCC/C=C\C\C=C/C=C/C=C/[C@@H](SC[C@H](N)C(O)=O)[C@@H](O)CCCC(O)=O" A1D7P SMILES CACTVS 3.385 "CCCCCC=CCC=CC=CC=C[CH](SC[CH](N)C(O)=O)[CH](O)CCCC(O)=O" A1D7P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC/C=C\C/C=C\C=C\C=C\[C@H]([C@H](CCCC(=O)O)O)SC[C@@H](C(=O)O)N" A1D7P SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC=CCC=CC=CC=CC(C(CCCC(=O)O)O)SCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1D7P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D7P _pdbx_chem_comp_synonyms.name "leukotriene E4" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7P "Create component" 2024-04-09 PDBC A1D7P "Initial release" 2025-04-09 RCSB A1D7P "Modify coordinates" 2025-05-15 PDBC #