data_A1D7R # _chem_comp.id A1D7R _chem_comp.name "(2~{S})-2-azanyl-3-[6-(3-methylbut-2-enyl)-1~{H}-indol-3-yl]propanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H20 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms 6-dimethylallyl-L-tryptophan _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-12 _chem_comp.pdbx_modified_date 2025-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D7R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Z17 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D7R CZ3 C1 C 0 1 Y N N N N N -22.645 34.369 -22.673 -1.224 -1.492 -0.120 CZ3 A1D7R 1 A1D7R CH2 C2 C 0 1 Y N N N N N -22.625 35.754 -22.491 -2.170 -0.560 -0.524 CH2 A1D7R 2 A1D7R CZ2 C3 C 0 1 Y N N N N N -21.699 36.306 -21.610 -1.850 0.777 -0.604 CZ2 A1D7R 3 A1D7R CE2 C4 C 0 1 Y N N N N N -20.788 35.481 -20.912 -0.566 1.201 -0.277 CE2 A1D7R 4 A1D7R CD2 C5 C 0 1 Y N N N N N -20.807 34.101 -21.097 0.389 0.253 0.132 CD2 A1D7R 5 A1D7R CE3 C6 C 0 1 Y N N N N N -21.751 33.548 -21.992 0.043 -1.097 0.206 CE3 A1D7R 6 A1D7R CD1 C7 C 0 1 Y N N N N N -19.207 34.653 -19.611 1.349 2.297 0.149 CD1 A1D7R 7 A1D7R CG C8 C 0 1 Y N N N N N -19.778 33.548 -20.261 1.618 1.006 0.399 CG A1D7R 8 A1D7R CB C9 C 0 1 N N N N N N -19.428 32.044 -20.114 2.933 0.438 0.865 CB A1D7R 9 A1D7R CA C10 C 0 1 N N S N Y N -18.020 31.564 -19.692 3.736 -0.049 -0.343 CA A1D7R 10 A1D7R C C11 C 0 1 N N N N Y Y -17.250 30.930 -20.891 5.099 -0.504 0.109 C A1D7R 11 A1D7R C12 C12 C 0 1 N N N N N N -23.626 36.637 -23.263 -3.562 -1.016 -0.879 C12 A1D7R 12 A1D7R C13 C13 C 0 1 N N N N N N -23.596 38.142 -22.958 -4.429 -0.992 0.354 C13 A1D7R 13 A1D7R C14 C14 C 0 1 N N N N N N -24.873 38.853 -23.413 -5.519 -0.267 0.373 C14 A1D7R 14 A1D7R C15 C15 C 0 1 N N N N N N -25.087 38.693 -24.926 -6.454 -0.343 1.553 C15 A1D7R 15 A1D7R C16 C16 C 0 1 N N N N N N -24.908 40.313 -22.930 -5.840 0.644 -0.784 C16 A1D7R 16 A1D7R NE1 N1 N 0 1 Y N N N N N -19.818 35.768 -20.014 0.049 2.433 -0.255 NE1 A1D7R 17 A1D7R N N2 N 0 1 N N N Y Y N -17.259 32.601 -19.006 3.032 -1.171 -0.979 N A1D7R 18 A1D7R O O1 O 0 1 N N N N Y Y -17.269 31.426 -22.059 5.324 -1.681 0.262 O A1D7R 19 A1D7R OXT O2 O 0 1 N Y N N Y Y -16.590 29.862 -20.726 6.064 0.399 0.344 OXT A1D7R 20 A1D7R HZ3 H1 H 0 1 N N N N N N -23.363 33.930 -23.350 -1.492 -2.536 -0.058 HZ3 A1D7R 21 A1D7R HZ2 H2 H 0 1 N N N N N N -21.677 37.375 -21.458 -2.593 1.495 -0.919 HZ2 A1D7R 22 A1D7R HE3 H3 H 0 1 N N N N N N -21.779 32.480 -22.149 0.774 -1.828 0.519 HE3 A1D7R 23 A1D7R HD1 H4 H 0 1 N N N N N N -18.399 34.608 -18.896 2.054 3.108 0.253 HD1 A1D7R 24 A1D7R HB2 H5 H 0 1 N N N N N N -20.127 31.637 -19.369 3.497 1.210 1.388 HB2 A1D7R 25 A1D7R HB3 H6 H 0 1 N N N N N N -19.628 31.585 -21.093 2.749 -0.398 1.540 HB3 A1D7R 26 A1D7R HA H7 H 0 1 N N N N Y N -18.179 30.749 -18.970 3.843 0.765 -1.060 HA A1D7R 27 A1D7R H8 H8 H 0 1 N N N N N N -24.638 36.271 -23.035 -3.982 -0.349 -1.632 H8 A1D7R 28 A1D7R H9 H9 H 0 1 N N N N N N -23.423 36.510 -24.337 -3.522 -2.031 -1.275 H9 A1D7R 29 A1D7R H10 H10 H 0 1 N N N N N N -22.768 38.642 -22.477 -4.150 -1.572 1.221 H10 A1D7R 30 A1D7R H13 H13 H 0 1 N N N N N N -26.010 39.213 -25.223 -5.923 -0.045 2.457 H13 A1D7R 31 A1D7R H14 H14 H 0 1 N N N N N N -24.232 39.127 -25.465 -7.299 0.325 1.391 H14 A1D7R 32 A1D7R H15 H15 H 0 1 N N N N N N -25.172 37.625 -25.173 -6.815 -1.365 1.665 H15 A1D7R 33 A1D7R H16 H16 H 0 1 N N N N N N -24.748 40.344 -21.842 -6.351 0.077 -1.562 H16 A1D7R 34 A1D7R H17 H17 H 0 1 N N N N N N -24.115 40.885 -23.434 -6.484 1.454 -0.442 H17 A1D7R 35 A1D7R H18 H18 H 0 1 N N N N N N -25.887 40.755 -23.169 -4.916 1.060 -1.186 H18 A1D7R 36 A1D7R HE1 H19 H 0 1 N N N N N N -19.591 36.689 -19.696 -0.376 3.272 -0.493 HE1 A1D7R 37 A1D7R H H20 H 0 1 N N N Y Y N -17.801 32.968 -18.250 3.508 -1.469 -1.816 H A1D7R 38 A1D7R H2 H21 H 0 1 N Y N Y Y N -16.411 32.210 -18.648 2.919 -1.939 -0.334 H2 A1D7R 39 A1D7R HXT H23 H 0 1 N Y N N Y Y -16.200 29.600 -21.551 6.923 0.060 0.633 HXT A1D7R 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D7R C15 C14 SING N N 1 A1D7R C14 C13 DOUB N N 2 A1D7R C14 C16 SING N N 3 A1D7R C12 C13 SING N N 4 A1D7R C12 CH2 SING N N 5 A1D7R CZ3 CH2 SING Y N 6 A1D7R CZ3 CE3 DOUB Y N 7 A1D7R CH2 CZ2 DOUB Y N 8 A1D7R O C DOUB N N 9 A1D7R CE3 CD2 SING Y N 10 A1D7R CZ2 CE2 SING Y N 11 A1D7R CD2 CE2 DOUB Y N 12 A1D7R CD2 CG SING Y N 13 A1D7R CE2 NE1 SING Y N 14 A1D7R C OXT SING N N 15 A1D7R C CA SING N N 16 A1D7R CG CB SING N N 17 A1D7R CG CD1 DOUB Y N 18 A1D7R CB CA SING N N 19 A1D7R NE1 CD1 SING Y N 20 A1D7R CA N SING N N 21 A1D7R CZ3 HZ3 SING N N 22 A1D7R CZ2 HZ2 SING N N 23 A1D7R CE3 HE3 SING N N 24 A1D7R CD1 HD1 SING N N 25 A1D7R CB HB2 SING N N 26 A1D7R CB HB3 SING N N 27 A1D7R CA HA SING N N 28 A1D7R C12 H8 SING N N 29 A1D7R C12 H9 SING N N 30 A1D7R C13 H10 SING N N 31 A1D7R C15 H13 SING N N 32 A1D7R C15 H14 SING N N 33 A1D7R C15 H15 SING N N 34 A1D7R C16 H16 SING N N 35 A1D7R C16 H17 SING N N 36 A1D7R C16 H18 SING N N 37 A1D7R NE1 HE1 SING N N 38 A1D7R N H SING N N 39 A1D7R N H2 SING N N 40 A1D7R OXT HXT SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D7R InChI InChI 1.06 "InChI=1S/C16H20N2O2/c1-10(2)3-4-11-5-6-13-12(8-14(17)16(19)20)9-18-15(13)7-11/h3,5-7,9,14,18H,4,8,17H2,1-2H3,(H,19,20)/t14-/m0/s1" A1D7R InChIKey InChI 1.06 XPUOGJPNKWDYTE-AWEZNQCLSA-N A1D7R SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCc1ccc2c(C[C@H](N)C(O)=O)c[nH]c2c1" A1D7R SMILES CACTVS 3.385 "CC(C)=CCc1ccc2c(C[CH](N)C(O)=O)c[nH]c2c1" A1D7R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCc1ccc2c(c1)[nH]cc2C[C@@H](C(=O)O)N)C" A1D7R SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCc1ccc2c(c1)[nH]cc2CC(C(=O)O)N)C" # _pdbx_chem_comp_identifier.comp_id A1D7R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[6-(3-methylbut-2-enyl)-1~{H}-indol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D7R "Create component" 2024-04-12 PDBC A1D7R "Modify PCM" 2024-11-18 PDBC A1D7R "Initial release" 2025-02-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D7R _pdbx_chem_comp_synonyms.name 6-dimethylallyl-L-tryptophan _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D7R _pdbx_chem_comp_pcm.modified_residue_id TRP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #