data_A1D80 # _chem_comp.id A1D80 _chem_comp.name "6-[(6-chloranyl-2-pentyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H26 Cl F3 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-11 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.996 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D80 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZUB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D80 N1 N1 N 0 1 N N N N N N 8.837 9.631 -1.015 1.801 0.325 -0.094 N1 A1D80 1 A1D80 N3 N2 N 0 1 N N N N N N 8.305 9.358 -3.291 0.723 -1.332 1.235 N3 A1D80 2 A1D80 C4 C1 C 0 1 Y N N N N N 4.195 10.368 0.334 5.153 -2.002 -1.742 C4 A1D80 3 A1D80 C5 C2 C 0 1 Y N N N N N 4.020 9.009 0.370 4.972 -3.297 -1.288 C5 A1D80 4 A1D80 C6 C3 C 0 1 Y N N N N N 5.036 8.145 0.009 3.728 -3.701 -0.827 C6 A1D80 5 A1D80 C7 C4 C 0 1 N N N N N N 7.758 10.631 -0.874 1.698 -0.548 -1.266 C7 A1D80 6 A1D80 C8 C5 C 0 1 N N N N N N 9.513 9.249 0.139 2.374 1.537 -0.211 C8 A1D80 7 A1D80 C10 C6 C 0 1 N N N N N N 10.080 8.054 -2.328 1.413 0.723 2.207 C10 A1D80 8 A1D80 C13 C7 C 0 1 Y N N N N N 12.185 8.529 1.840 2.063 4.689 0.325 C13 A1D80 9 A1D80 C15 C8 C 0 1 Y N N N N N 8.989 9.478 -5.545 -1.418 -0.369 0.830 C15 A1D80 10 A1D80 C17 C9 C 0 1 Y N N N N N 8.872 7.483 -6.961 -3.437 -1.801 0.999 C17 A1D80 11 A1D80 C20 C10 C 0 1 Y N N N N N 9.737 9.235 -8.003 -3.857 0.379 0.456 C20 A1D80 12 A1D80 C21 C11 C 0 1 N N N N N N 10.203 8.051 -10.141 -6.338 0.248 0.284 C21 A1D80 13 A1D80 C22 C12 C 0 1 N N N N N N 11.616 7.469 -10.102 -7.045 -0.567 -0.801 C22 A1D80 14 A1D80 C24 C13 C 0 1 N N N N N N 13.612 6.612 -11.441 -9.144 -0.797 -2.137 C24 A1D80 15 A1D80 C26 C14 C 0 1 Y N N N N N 13.682 9.198 3.088 0.532 6.199 0.539 C26 A1D80 16 A1D80 C1 C15 C 0 1 Y N N N N N 6.250 8.618 -0.414 2.670 -2.810 -0.820 C1 A1D80 17 A1D80 C2 C16 C 0 1 Y N N N N N 6.461 10.000 -0.439 2.851 -1.517 -1.274 C2 A1D80 18 A1D80 C3 C17 C 0 1 Y N N N N N 5.409 10.824 -0.137 4.094 -1.111 -1.730 C3 A1D80 19 A1D80 F1 F1 F 0 1 N N N N N N 5.643 12.168 -0.169 4.272 0.155 -2.167 F1 A1D80 20 A1D80 F2 F2 F 0 1 N N N N N N 2.847 8.488 0.799 6.006 -4.167 -1.296 F2 A1D80 21 A1D80 F3 F3 F 0 1 N N N N N N 4.818 6.814 0.078 3.550 -4.965 -0.384 F3 A1D80 22 A1D80 N2 N3 N 0 1 N N N N N N 10.445 8.234 0.017 2.481 2.358 0.850 N2 A1D80 23 A1D80 C9 C18 C 0 1 N N N N N N 10.821 7.657 -1.192 2.016 1.982 2.057 C9 A1D80 24 A1D80 C11 C19 C 0 1 N N N N N N 9.062 9.002 -2.210 1.307 -0.096 1.117 C11 A1D80 25 A1D80 O1 O1 O 0 1 N N N N N N 9.285 9.779 1.197 2.802 1.896 -1.291 O1 A1D80 26 A1D80 O2 O2 O 0 1 N N N N N N 11.719 6.821 -1.194 2.121 2.729 3.015 O2 A1D80 27 A1D80 C12 C20 C 0 1 N N N N N N 11.140 7.759 1.217 3.111 3.671 0.691 C12 A1D80 28 A1D80 C14 C21 C 0 1 Y N N N N N 8.447 8.718 -4.528 -0.668 -1.461 1.146 C14 A1D80 29 A1D80 C16 C22 C 0 1 Y N N N N N 9.218 8.850 -6.772 -2.822 -0.490 0.743 C16 A1D80 30 A1D80 C18 C23 C 0 1 Y N N N N N 8.283 6.747 -5.913 -2.599 -2.894 1.311 C18 A1D80 31 A1D80 C19 C24 C 0 1 Y N N N N N 8.114 7.375 -4.709 -1.258 -2.712 1.383 C19 A1D80 32 A1D80 CL1 CL1 CL 0 0 N N N N N N 7.417 6.452 -3.408 -0.241 -4.066 1.768 CL1 A1D80 33 A1D80 N4 N4 N 0 1 Y N N N N N 9.705 8.160 -8.775 -5.005 -0.311 0.524 N4 A1D80 34 A1D80 N5 N5 N 0 1 Y N N N N N 9.182 7.039 -8.199 -4.741 -1.645 0.856 N5 A1D80 35 A1D80 C23 C25 C 0 1 N N N N N N 12.192 7.179 -11.481 -8.437 0.017 -1.052 C23 A1D80 36 A1D80 C25 C26 C 0 1 N N N N N N 13.797 5.294 -10.713 -10.536 -0.213 -2.387 C25 A1D80 37 A1D80 N6 N6 N 0 1 Y N N N N N 12.617 9.614 1.221 1.694 4.996 -0.891 N6 A1D80 38 A1D80 N7 N7 N 0 1 Y N N N N N 13.630 10.019 2.030 0.696 5.979 -0.776 N7 A1D80 39 A1D80 N8 N8 N 0 1 Y N N N N N 12.761 8.257 2.996 1.357 5.419 1.189 N8 A1D80 40 A1D80 C27 C27 C 0 1 N N N N N N 14.372 11.259 1.742 -0.022 6.633 -1.873 C27 A1D80 41 A1D80 H1 H1 H 0 1 N N N N N N 7.634 10.093 -3.196 1.274 -2.118 1.380 H1 A1D80 42 A1D80 H2 H2 H 0 1 N N N N N N 3.421 11.048 0.658 6.121 -1.686 -2.102 H2 A1D80 43 A1D80 H3 H3 H 0 1 N N N N N N 8.060 11.377 -0.124 0.759 -1.100 -1.226 H3 A1D80 44 A1D80 H4 H4 H 0 1 N N N N N N 7.604 11.128 -1.843 1.725 0.057 -2.173 H4 A1D80 45 A1D80 H5 H5 H 0 1 N N N N N N 10.302 7.622 -3.292 1.039 0.406 3.169 H5 A1D80 46 A1D80 H6 H6 H 0 1 N N N N N N 9.228 10.521 -5.397 -0.942 0.584 0.651 H6 A1D80 47 A1D80 H7 H7 H 0 1 N N N N N N 10.095 10.217 -8.276 -3.760 1.428 0.220 H7 A1D80 48 A1D80 H8 H8 H 0 1 N N N N N N 10.226 9.047 -10.607 -6.244 1.284 -0.042 H8 A1D80 49 A1D80 H9 H9 H 0 1 N N N N N N 9.546 7.388 -10.723 -6.920 0.208 1.205 H9 A1D80 50 A1D80 H10 H10 H 0 1 N N N N N N 11.590 6.529 -9.531 -6.464 -0.527 -1.722 H10 A1D80 51 A1D80 H11 H11 H 0 1 N N N N N N 12.275 8.188 -9.594 -7.139 -1.602 -0.475 H11 A1D80 52 A1D80 H12 H12 H 0 1 N N N N N N 13.943 6.469 -12.480 -8.562 -0.758 -3.058 H12 A1D80 53 A1D80 H13 H13 H 0 1 N N N N N N 14.255 7.357 -10.950 -9.238 -1.833 -1.811 H13 A1D80 54 A1D80 H14 H14 H 0 1 N N N N N N 14.382 9.293 3.905 -0.161 6.899 0.983 H14 A1D80 55 A1D80 H15 H15 H 0 1 N N N N N N 7.029 7.937 -0.722 1.701 -3.125 -0.461 H15 A1D80 56 A1D80 H16 H16 H 0 1 N N N N N N 10.366 7.610 1.984 3.861 3.621 -0.098 H16 A1D80 57 A1D80 H17 H17 H 0 1 N N N N N N 11.586 6.789 0.953 3.588 3.961 1.628 H17 A1D80 58 A1D80 H18 H18 H 0 1 N N N N N N 7.975 5.722 -6.056 -3.026 -3.868 1.503 H18 A1D80 59 A1D80 H19 H19 H 0 1 N N N N N N 12.207 8.116 -12.056 -9.019 -0.022 -0.131 H19 A1D80 60 A1D80 H20 H20 H 0 1 N N N N N N 11.540 6.450 -11.985 -8.343 1.053 -1.378 H20 A1D80 61 A1D80 H21 H21 H 0 1 N N N N N N 14.855 4.996 -10.756 -11.118 -0.253 -1.466 H21 A1D80 62 A1D80 H22 H22 H 0 1 N N N N N N 13.491 5.409 -9.663 -10.442 0.822 -2.713 H22 A1D80 63 A1D80 H23 H23 H 0 1 N N N N N N 13.179 4.521 -11.192 -11.040 -0.794 -3.160 H23 A1D80 64 A1D80 H24 H24 H 0 1 N N N N N N 13.967 11.726 0.832 -0.918 6.061 -2.112 H24 A1D80 65 A1D80 H25 H25 H 0 1 N N N N N N 14.267 11.954 2.588 -0.303 7.642 -1.572 H25 A1D80 66 A1D80 H26 H26 H 0 1 N N N N N N 15.436 11.023 1.591 0.623 6.682 -2.751 H26 A1D80 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D80 C23 C24 SING N N 1 A1D80 C23 C22 SING N N 2 A1D80 C24 C25 SING N N 3 A1D80 C21 C22 SING N N 4 A1D80 C21 N4 SING N N 5 A1D80 N4 N5 SING Y N 6 A1D80 N4 C20 SING Y N 7 A1D80 N5 C17 DOUB Y N 8 A1D80 C20 C16 DOUB Y N 9 A1D80 C17 C16 SING Y N 10 A1D80 C17 C18 SING Y N 11 A1D80 C16 C15 SING Y N 12 A1D80 C18 C19 DOUB Y N 13 A1D80 C15 C14 DOUB Y N 14 A1D80 C19 C14 SING Y N 15 A1D80 C19 CL1 SING N N 16 A1D80 C14 N3 SING N N 17 A1D80 N3 C11 SING N N 18 A1D80 C10 C11 DOUB N N 19 A1D80 C10 C9 SING N N 20 A1D80 C11 N1 SING N N 21 A1D80 O2 C9 DOUB N N 22 A1D80 C9 N2 SING N N 23 A1D80 N1 C7 SING N N 24 A1D80 N1 C8 SING N N 25 A1D80 C7 C2 SING N N 26 A1D80 C2 C1 DOUB Y N 27 A1D80 C2 C3 SING Y N 28 A1D80 C1 C6 SING Y N 29 A1D80 F1 C3 SING N N 30 A1D80 C3 C4 DOUB Y N 31 A1D80 C6 F3 SING N N 32 A1D80 C6 C5 DOUB Y N 33 A1D80 N2 C8 SING N N 34 A1D80 N2 C12 SING N N 35 A1D80 C8 O1 DOUB N N 36 A1D80 C4 C5 SING Y N 37 A1D80 C5 F2 SING N N 38 A1D80 C12 C13 SING N N 39 A1D80 N6 C13 DOUB Y N 40 A1D80 N6 N7 SING Y N 41 A1D80 C27 N7 SING N N 42 A1D80 C13 N8 SING Y N 43 A1D80 N7 C26 SING Y N 44 A1D80 N8 C26 DOUB Y N 45 A1D80 N3 H1 SING N N 46 A1D80 C4 H2 SING N N 47 A1D80 C7 H3 SING N N 48 A1D80 C7 H4 SING N N 49 A1D80 C10 H5 SING N N 50 A1D80 C15 H6 SING N N 51 A1D80 C20 H7 SING N N 52 A1D80 C21 H8 SING N N 53 A1D80 C21 H9 SING N N 54 A1D80 C22 H10 SING N N 55 A1D80 C22 H11 SING N N 56 A1D80 C24 H12 SING N N 57 A1D80 C24 H13 SING N N 58 A1D80 C26 H14 SING N N 59 A1D80 C1 H15 SING N N 60 A1D80 C12 H16 SING N N 61 A1D80 C12 H17 SING N N 62 A1D80 C18 H18 SING N N 63 A1D80 C23 H19 SING N N 64 A1D80 C23 H20 SING N N 65 A1D80 C25 H21 SING N N 66 A1D80 C25 H22 SING N N 67 A1D80 C25 H23 SING N N 68 A1D80 C27 H24 SING N N 69 A1D80 C27 H25 SING N N 70 A1D80 C27 H26 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D80 InChI InChI 1.06 "InChI=1S/C27H26ClF3N8O2/c1-3-4-5-6-37-12-17-8-23(18(28)9-22(17)34-37)33-25-11-26(40)39(14-24-32-15-36(2)35-24)27(41)38(25)13-16-7-20(30)21(31)10-19(16)29/h7-12,15,33H,3-6,13-14H2,1-2H3" A1D80 InChIKey InChI 1.06 KBUUVDPQDNYXTI-UHFFFAOYSA-N A1D80 SMILES_CANONICAL CACTVS 3.385 "CCCCCn1cc2cc(NC3=CC(=O)N(Cc4ncn(C)n4)C(=O)N3Cc5cc(F)c(F)cc5F)c(Cl)cc2n1" A1D80 SMILES CACTVS 3.385 "CCCCCn1cc2cc(NC3=CC(=O)N(Cc4ncn(C)n4)C(=O)N3Cc5cc(F)c(F)cc5F)c(Cl)cc2n1" A1D80 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCn1cc2cc(c(cc2n1)Cl)NC3=CC(=O)N(C(=O)N3Cc4cc(c(cc4F)F)F)Cc5ncn(n5)C" A1D80 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCn1cc2cc(c(cc2n1)Cl)NC3=CC(=O)N(C(=O)N3Cc4cc(c(cc4F)F)F)Cc5ncn(n5)C" # _pdbx_chem_comp_identifier.comp_id A1D80 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[(6-chloranyl-2-pentyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D80 "Create component" 2024-06-11 PDBC A1D80 "Initial release" 2025-06-11 RCSB #