data_A1D86 # _chem_comp.id A1D86 _chem_comp.name "6-[2-[[2-[4-(trifluoromethyloxy)phenyl]benzimidazol-1-yl]methyl]phenoxy]hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H25 F3 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-12 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.494 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D86 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZNN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D86 C1 C1 C 0 1 N N N N N N 19.028 21.093 13.030 -0.219 -0.574 0.317 C1 A1D86 1 A1D86 C2 C2 C 0 1 Y N N N N N 19.850 22.244 12.494 0.215 -1.538 -0.757 C2 A1D86 2 A1D86 C3 C3 C 0 1 Y N N N N N 21.164 21.994 12.095 1.566 -1.761 -0.984 C3 A1D86 3 A1D86 C4 C4 C 0 1 Y N N N N N 21.961 23.001 11.571 1.963 -2.649 -1.973 C4 A1D86 4 A1D86 C5 C5 C 0 1 Y N N N N N 21.462 24.283 11.476 1.013 -3.309 -2.728 C5 A1D86 5 A1D86 C6 C6 C 0 1 Y N N N N N 20.181 24.561 11.892 -0.332 -3.084 -2.501 C6 A1D86 6 A1D86 C7 C7 C 0 1 Y N N N N N 19.379 23.548 12.392 -0.730 -2.204 -1.512 C7 A1D86 7 A1D86 C9 C8 C 0 1 N N N N N N 22.985 20.457 12.060 3.867 -1.437 -0.484 C9 A1D86 8 A1D86 C10 C9 C 0 1 N N N N N N 23.256 19.068 12.516 4.760 -0.630 0.461 C10 A1D86 9 A1D86 C11 C10 C 0 1 N N N N N N 22.341 17.988 11.938 6.229 -0.928 0.153 C11 A1D86 10 A1D86 C12 C11 C 0 1 N N N N N N 22.839 16.650 12.475 7.119 -0.219 1.175 C12 A1D86 11 A1D86 C13 C12 C 0 1 N N N N N N 22.017 15.429 12.154 8.588 -0.415 0.795 C13 A1D86 12 A1D86 C14 C13 C 0 1 N N N N N N 22.056 15.007 10.699 9.467 0.182 1.864 C14 A1D86 13 A1D86 C18 C14 C 0 1 Y N N N N N 16.882 21.239 11.700 0.376 1.623 -0.815 C18 A1D86 14 A1D86 C19 C15 C 0 1 Y N N N N N 17.287 21.031 10.386 1.757 1.631 -0.943 C19 A1D86 15 A1D86 C20 C16 C 0 1 Y N N N N N 16.297 21.060 9.430 2.386 2.711 -1.526 C20 A1D86 16 A1D86 C21 C17 C 0 1 Y N N N N N 14.961 21.284 9.760 1.647 3.792 -1.985 C21 A1D86 17 A1D86 C22 C18 C 0 1 Y N N N N N 14.562 21.480 11.064 0.276 3.802 -1.867 C22 A1D86 18 A1D86 C23 C19 C 0 1 Y N N N N N 15.546 21.456 12.048 -0.379 2.715 -1.279 C23 A1D86 19 A1D86 C25 C20 C 0 1 Y N N N N N 16.668 21.509 13.875 -1.778 1.270 -0.439 C25 A1D86 20 A1D86 C26 C21 C 0 1 Y N N N N N 17.021 21.604 15.301 -3.042 0.637 -0.010 C26 A1D86 21 A1D86 C27 C22 C 0 1 Y N N N N N 16.196 20.922 16.193 -3.098 -0.743 0.198 C27 A1D86 22 A1D86 C28 C23 C 0 1 Y N N N N N 16.476 20.907 17.542 -4.279 -1.330 0.599 C28 A1D86 23 A1D86 C29 C24 C 0 1 Y N N N N N 17.531 21.652 18.034 -5.412 -0.552 0.795 C29 A1D86 24 A1D86 C30 C25 C 0 1 Y N N N N N 18.373 22.329 17.162 -5.361 0.821 0.589 C30 A1D86 25 A1D86 C31 C26 C 0 1 Y N N N N N 18.107 22.319 15.808 -4.182 1.417 0.194 C31 A1D86 26 A1D86 C33 C27 C 0 1 N N N N N N 17.780 22.679 20.116 -7.724 -0.291 1.280 C33 A1D86 27 A1D86 F34 F1 F 0 1 N N N N N N 18.530 23.627 19.647 -7.520 0.672 2.274 F34 A1D86 28 A1D86 F35 F2 F 0 1 N N N N N N 16.551 23.147 20.078 -8.845 -1.064 1.603 F35 A1D86 29 A1D86 F36 F3 F 0 1 N N N N N N 18.134 22.472 21.372 -7.935 0.345 0.052 F36 A1D86 30 A1D86 N17 N1 N 0 1 Y N N N N N 17.588 21.297 12.887 -0.532 0.723 -0.288 N17 A1D86 31 A1D86 N24 N2 N 0 1 Y N N N N N 15.435 21.617 13.424 -1.681 2.441 -1.021 N24 A1D86 32 A1D86 O15 O1 O 0 1 N N N N N N 23.079 15.242 10.008 8.974 0.627 2.873 O15 A1D86 33 A1D86 O16 O2 O 0 1 N N N N N N 21.041 14.444 10.264 10.798 0.219 1.695 O16 A1D86 34 A1D86 O32 O3 O 0 1 N N N N N N 17.753 21.574 19.430 -6.574 -1.134 1.189 O32 A1D86 35 A1D86 O8 O4 O 0 1 N N N N N N 21.579 20.704 12.246 2.498 -1.110 -0.239 O8 A1D86 36 A1D86 H1 H1 H 0 1 N N N N N N 19.307 20.180 12.484 -1.105 -0.964 0.818 H1 A1D86 37 A1D86 H11 H2 H 0 1 N N N N N N 19.259 20.967 14.098 0.584 -0.451 1.043 H11 A1D86 38 A1D86 H4 H3 H 0 1 N N N N N N 22.965 22.783 11.240 3.013 -2.824 -2.151 H4 A1D86 39 A1D86 H5 H4 H 0 1 N N N N N N 22.080 25.072 11.073 1.322 -4.001 -3.498 H5 A1D86 40 A1D86 H6 H5 H 0 1 N N N N N N 19.800 25.570 11.829 -1.073 -3.601 -3.093 H6 A1D86 41 A1D86 H7 H6 H 0 1 N N N N N N 18.371 23.775 12.708 -1.781 -2.030 -1.336 H7 A1D86 42 A1D86 H9 H7 H 0 1 N N N N N N 23.248 20.562 10.997 4.119 -1.196 -1.516 H9 A1D86 43 A1D86 H91 H8 H 0 1 N N N N N N 23.574 21.170 12.655 4.023 -2.501 -0.311 H91 A1D86 44 A1D86 H101 H9 H 0 0 N N N N N N 23.154 19.046 13.611 4.569 0.434 0.322 H101 A1D86 45 A1D86 H10 H10 H 0 1 N N N N N N 24.291 18.818 12.239 4.542 -0.907 1.492 H10 A1D86 46 A1D86 H112 H11 H 0 0 N N N N N N 22.392 17.997 10.839 6.401 -2.003 0.206 H112 A1D86 47 A1D86 H111 H12 H 0 0 N N N N N N 21.303 18.161 12.258 6.470 -0.571 -0.849 H111 A1D86 48 A1D86 H12 H13 H 0 1 N N N N N N 23.848 16.486 12.069 6.885 0.846 1.184 H12 A1D86 49 A1D86 H121 H14 H 0 0 N N N N N N 22.894 16.733 13.570 6.941 -0.638 2.165 H121 A1D86 50 A1D86 H131 H15 H 0 0 N N N N N N 20.971 15.639 12.422 8.801 -1.480 0.703 H131 A1D86 51 A1D86 H13 H16 H 0 1 N N N N N N 22.391 14.593 12.764 8.787 0.079 -0.156 H13 A1D86 52 A1D86 H19 H17 H 0 1 N N N N N N 18.321 20.856 10.130 2.339 0.793 -0.587 H19 A1D86 53 A1D86 H20 H18 H 0 1 N N N N N N 16.563 20.905 8.395 3.461 2.716 -1.626 H20 A1D86 54 A1D86 H21 H19 H 0 1 N N N N N N 14.221 21.304 8.974 2.152 4.632 -2.439 H21 A1D86 55 A1D86 H22 H20 H 0 1 N N N N N N 13.524 21.646 11.313 -0.293 4.647 -2.226 H22 A1D86 56 A1D86 H27 H21 H 0 1 N N N N N N 15.327 20.399 15.823 -2.217 -1.349 0.045 H27 A1D86 57 A1D86 H28 H22 H 0 1 N N N N N N 15.872 20.314 18.213 -4.323 -2.397 0.759 H28 A1D86 58 A1D86 H30 H23 H 0 1 N N N N N N 19.233 22.861 17.542 -6.244 1.423 0.742 H30 A1D86 59 A1D86 H31 H24 H 0 1 N N N N N N 18.746 22.870 15.134 -4.141 2.485 0.039 H31 A1D86 60 A1D86 H2 H25 H 0 1 N N N N N N 21.166 14.228 9.347 11.321 0.611 2.408 H2 A1D86 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D86 C20 C21 DOUB Y N 1 A1D86 C20 C19 SING Y N 2 A1D86 C21 C22 SING Y N 3 A1D86 O15 C14 DOUB N N 4 A1D86 O16 C14 SING N N 5 A1D86 C19 C18 DOUB Y N 6 A1D86 C14 C13 SING N N 7 A1D86 C22 C23 DOUB Y N 8 A1D86 C5 C4 DOUB Y N 9 A1D86 C5 C6 SING Y N 10 A1D86 C4 C3 SING Y N 11 A1D86 C18 C23 SING Y N 12 A1D86 C18 N17 SING Y N 13 A1D86 C6 C7 DOUB Y N 14 A1D86 C11 C12 SING N N 15 A1D86 C11 C10 SING N N 16 A1D86 C23 N24 SING Y N 17 A1D86 C9 O8 SING N N 18 A1D86 C9 C10 SING N N 19 A1D86 C3 O8 SING N N 20 A1D86 C3 C2 DOUB Y N 21 A1D86 C13 C12 SING N N 22 A1D86 C7 C2 SING Y N 23 A1D86 C2 C1 SING N N 24 A1D86 N17 C1 SING N N 25 A1D86 N17 C25 SING Y N 26 A1D86 N24 C25 DOUB Y N 27 A1D86 C25 C26 SING N N 28 A1D86 C26 C31 DOUB Y N 29 A1D86 C26 C27 SING Y N 30 A1D86 C31 C30 SING Y N 31 A1D86 C27 C28 DOUB Y N 32 A1D86 C30 C29 DOUB Y N 33 A1D86 C28 C29 SING Y N 34 A1D86 C29 O32 SING N N 35 A1D86 O32 C33 SING N N 36 A1D86 F34 C33 SING N N 37 A1D86 F35 C33 SING N N 38 A1D86 C33 F36 SING N N 39 A1D86 C1 H1 SING N N 40 A1D86 C1 H11 SING N N 41 A1D86 C4 H4 SING N N 42 A1D86 C5 H5 SING N N 43 A1D86 C6 H6 SING N N 44 A1D86 C7 H7 SING N N 45 A1D86 C9 H9 SING N N 46 A1D86 C9 H91 SING N N 47 A1D86 C10 H101 SING N N 48 A1D86 C10 H10 SING N N 49 A1D86 C11 H112 SING N N 50 A1D86 C11 H111 SING N N 51 A1D86 C12 H12 SING N N 52 A1D86 C12 H121 SING N N 53 A1D86 C13 H131 SING N N 54 A1D86 C13 H13 SING N N 55 A1D86 C19 H19 SING N N 56 A1D86 C20 H20 SING N N 57 A1D86 C21 H21 SING N N 58 A1D86 C22 H22 SING N N 59 A1D86 C27 H27 SING N N 60 A1D86 C28 H28 SING N N 61 A1D86 C30 H30 SING N N 62 A1D86 C31 H31 SING N N 63 A1D86 O16 H2 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D86 InChI InChI 1.06 "InChI=1S/C27H25F3N2O4/c28-27(29,30)36-21-15-13-19(14-16-21)26-31-22-9-4-5-10-23(22)32(26)18-20-8-3-6-11-24(20)35-17-7-1-2-12-25(33)34/h3-6,8-11,13-16H,1-2,7,12,17-18H2,(H,33,34)" A1D86 InChIKey InChI 1.06 CIJJQZAOSIHXTJ-UHFFFAOYSA-N A1D86 SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCCCCOc1ccccc1Cn2c3ccccc3nc2c4ccc(OC(F)(F)F)cc4" A1D86 SMILES CACTVS 3.385 "OC(=O)CCCCCOc1ccccc1Cn2c3ccccc3nc2c4ccc(OC(F)(F)F)cc4" A1D86 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)Cn2c3ccccc3nc2c4ccc(cc4)OC(F)(F)F)OCCCCCC(=O)O" A1D86 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)Cn2c3ccccc3nc2c4ccc(cc4)OC(F)(F)F)OCCCCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1D86 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[2-[[2-[4-(trifluoromethyloxy)phenyl]benzimidazol-1-yl]methyl]phenoxy]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D86 "Create component" 2024-06-12 PDBC A1D86 "Initial release" 2025-12-24 RCSB #