data_A1D87 # _chem_comp.id A1D87 _chem_comp.name "6-[(6-chloranyl-2-propan-2-yl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H22 Cl F3 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-12 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.943 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D87 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZT9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D87 C4 C1 C 0 1 Y N N N N N 9.898 9.061 -8.073 -3.120 -2.605 -0.792 C4 A1D87 1 A1D87 C14 C2 C 0 1 N N N N N N 14.681 11.036 1.587 4.359 -5.984 0.317 C14 A1D87 2 A1D87 C5 C3 C 0 1 Y N N N N N 9.384 8.634 -6.861 -2.893 -1.515 0.027 C5 A1D87 3 A1D87 C6 C4 C 0 1 Y N N N N N 9.183 9.237 -5.618 -1.743 -0.909 0.580 C6 A1D87 4 A1D87 C11 C5 C 0 1 N N N N N N 11.261 7.541 1.211 4.315 -0.969 0.349 C11 A1D87 5 A1D87 C7 C6 C 0 1 Y N N N N N 8.613 8.475 -4.622 -1.878 0.191 1.371 C7 A1D87 6 A1D87 C8 C7 C 0 1 N N N N N N 9.217 8.759 -2.298 0.511 0.345 1.545 C8 A1D87 7 A1D87 C9 C8 C 0 1 N N N N N N 10.217 7.784 -2.391 1.350 -0.209 2.471 C9 A1D87 8 A1D87 C10 C9 C 0 1 N N N N N N 10.944 7.394 -1.241 2.621 -0.646 2.065 C10 A1D87 9 A1D87 C12 C10 C 0 1 Y N N N N N 12.386 8.374 1.695 4.236 -2.410 -0.084 C12 A1D87 10 A1D87 C13 C11 C 0 1 Y N N N N N 13.914 9.054 2.952 3.983 -4.143 -1.350 C13 A1D87 11 A1D87 N1 N1 N 0 1 Y N N N N N 9.864 8.027 -8.911 -4.442 -2.699 -0.995 N1 A1D87 12 A1D87 N2 N2 N 0 1 N N N N N N 8.484 9.135 -3.390 -0.734 0.786 1.915 N2 A1D87 13 A1D87 C3 C12 C 0 1 N N N N N N 9.215 8.267 -11.259 -5.088 -3.281 -3.281 C3 A1D87 14 A1D87 N3 N3 N 0 1 N N N N N N 10.614 8.030 -0.037 2.990 -0.513 0.775 N3 A1D87 15 A1D87 C1 C13 C 0 1 N N N N N N 11.255 6.917 -10.574 -4.343 -5.046 -1.676 C1 A1D87 16 A1D87 C2 C14 C 0 1 N N N N N N 10.357 8.082 -10.304 -5.096 -3.721 -1.816 C2 A1D87 17 A1D87 O1 O1 O 0 1 N N N N N N 11.822 6.538 -1.228 3.386 -1.143 2.873 O1 A1D87 18 A1D87 N4 N4 N 0 1 Y N N N N N 13.006 8.105 2.849 3.977 -2.835 -1.320 N4 A1D87 19 A1D87 N5 N5 N 0 1 Y N N N N N 13.860 9.856 1.884 4.252 -4.587 -0.111 N5 A1D87 20 A1D87 N6 N6 N 0 1 Y N N N N N 12.846 9.457 1.077 4.415 -3.447 0.692 N6 A1D87 21 A1D87 C15 C15 C 0 1 N N N N N N 9.648 9.023 0.065 2.152 0.035 -0.123 C15 A1D87 22 A1D87 O2 O2 O 0 1 N N N N N N 9.420 9.579 1.118 2.505 0.146 -1.281 O2 A1D87 23 A1D87 N7 N7 N 0 1 N N N N N N 8.974 9.369 -1.091 0.928 0.462 0.241 N7 A1D87 24 A1D87 C16 C16 C 0 1 N N N N N N 7.939 10.401 -0.967 0.037 1.055 -0.759 C16 A1D87 25 A1D87 C17 C17 C 0 1 Y N N N N N 6.616 9.800 -0.555 0.356 2.520 -0.911 C17 A1D87 26 A1D87 C18 C18 C 0 1 Y N N N N N 6.404 8.437 -0.509 1.165 2.947 -1.947 C18 A1D87 27 A1D87 C19 C19 C 0 1 Y N N N N N 5.177 7.950 -0.110 1.458 4.292 -2.088 C19 A1D87 28 A1D87 F1 F1 F 0 1 N N N N N N 4.948 6.619 -0.053 2.249 4.709 -3.101 F1 A1D87 29 A1D87 C20 C20 C 0 1 Y N N N N N 4.140 8.803 0.182 0.940 5.211 -1.189 C20 A1D87 30 A1D87 F2 F2 F 0 1 N N N N N N 2.971 8.252 0.551 1.226 6.525 -1.326 F2 A1D87 31 A1D87 C21 C21 C 0 1 Y N N N N N 4.310 10.161 0.151 0.130 4.783 -0.152 C21 A1D87 32 A1D87 C22 C22 C 0 1 Y N N N N N 5.556 10.625 -0.254 -0.167 3.438 -0.016 C22 A1D87 33 A1D87 F3 F3 F 0 1 N N N N N N 5.765 11.971 -0.331 -0.962 3.020 0.993 F3 A1D87 34 A1D87 C23 C23 C 0 1 Y N N N N N 8.251 7.145 -4.823 -3.138 0.742 1.654 C23 A1D87 35 A1D87 CL1 CL1 CL 0 0 N N N N N N 7.541 6.214 -3.521 -3.238 2.145 2.670 CL1 A1D87 36 A1D87 C24 C24 C 0 1 Y N N N N N 8.458 6.526 -6.038 -4.279 0.206 1.153 C24 A1D87 37 A1D87 C25 C25 C 0 1 Y N N N N N 9.026 7.279 -7.090 -4.212 -0.935 0.325 C25 A1D87 38 A1D87 N8 N8 N 0 1 Y N N N N N 9.338 6.883 -8.358 -5.104 -1.673 -0.312 N8 A1D87 39 A1D87 H1 H1 H 0 1 N N N N N N 10.261 10.053 -8.298 -2.365 -3.261 -1.200 H1 A1D87 40 A1D87 H2 H2 H 0 1 N N N N N N 14.336 11.497 0.650 5.391 -6.320 0.208 H2 A1D87 41 A1D87 H3 H3 H 0 1 N N N N N N 14.590 11.762 2.408 4.058 -6.069 1.361 H3 A1D87 42 A1D87 H4 H4 H 0 1 N N N N N N 15.733 10.733 1.480 3.709 -6.604 -0.300 H4 A1D87 43 A1D87 H5 H5 H 0 1 N N N N N N 9.465 10.265 -5.443 -0.763 -1.316 0.376 H5 A1D87 44 A1D87 H6 H6 H 0 1 N N N N N N 10.497 7.505 2.001 5.016 -0.876 1.178 H6 A1D87 45 A1D87 H7 H7 H 0 1 N N N N N N 11.642 6.526 1.024 4.658 -0.357 -0.486 H7 A1D87 46 A1D87 H8 H8 H 0 1 N N N N N N 10.435 7.327 -3.345 1.040 -0.309 3.501 H8 A1D87 47 A1D87 H9 H9 H 0 1 N N N N N N 14.601 9.167 3.778 3.803 -4.758 -2.220 H9 A1D87 48 A1D87 H10 H10 H 0 1 N N N N N N 7.842 9.897 -3.309 -0.822 1.511 2.554 H10 A1D87 49 A1D87 H11 H11 H 0 1 N N N N N N 8.628 9.149 -10.963 -4.058 -3.151 -3.615 H11 A1D87 50 A1D87 H12 H12 H 0 1 N N N N N N 9.608 8.413 -12.276 -5.574 -4.042 -3.891 H12 A1D87 51 A1D87 H13 H13 H 0 1 N N N N N N 8.572 7.375 -11.239 -5.624 -2.338 -3.380 H13 A1D87 52 A1D87 H14 H14 H 0 1 N N N N N N 12.050 6.883 -9.815 -3.313 -4.915 -2.011 H14 A1D87 53 A1D87 H15 H15 H 0 1 N N N N N N 10.670 5.986 -10.535 -4.349 -5.359 -0.632 H15 A1D87 54 A1D87 H16 H16 H 0 1 N N N N N N 11.705 7.025 -11.572 -4.829 -5.806 -2.287 H16 A1D87 55 A1D87 H17 H17 H 0 1 N N N N N N 10.981 8.984 -10.384 -6.125 -3.852 -1.481 H17 A1D87 56 A1D87 H18 H18 H 0 1 N N N N N N 8.252 11.134 -0.209 0.177 0.551 -1.716 H18 A1D87 57 A1D87 H19 H19 H 0 1 N N N N N N 7.817 10.906 -1.937 -0.998 0.940 -0.437 H19 A1D87 58 A1D87 H20 H20 H 0 1 N N N N N N 7.195 7.755 -0.784 1.569 2.230 -2.647 H20 A1D87 59 A1D87 H21 H21 H 0 1 N N N N N N 3.515 10.838 0.428 -0.274 5.499 0.549 H21 A1D87 60 A1D87 H22 H22 H 0 1 N N N N N N 8.192 5.489 -6.182 -5.235 0.651 1.387 H22 A1D87 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D87 C3 C2 SING N N 1 A1D87 C1 C2 SING N N 2 A1D87 C2 N1 SING N N 3 A1D87 N1 N8 SING Y N 4 A1D87 N1 C4 SING Y N 5 A1D87 N8 C25 DOUB Y N 6 A1D87 C4 C5 DOUB Y N 7 A1D87 C25 C5 SING Y N 8 A1D87 C25 C24 SING Y N 9 A1D87 C5 C6 SING Y N 10 A1D87 C24 C23 DOUB Y N 11 A1D87 C6 C7 DOUB Y N 12 A1D87 C23 C7 SING Y N 13 A1D87 C23 CL1 SING N N 14 A1D87 C7 N2 SING N N 15 A1D87 N2 C8 SING N N 16 A1D87 C9 C8 DOUB N N 17 A1D87 C9 C10 SING N N 18 A1D87 C8 N7 SING N N 19 A1D87 C10 O1 DOUB N N 20 A1D87 C10 N3 SING N N 21 A1D87 N7 C16 SING N N 22 A1D87 N7 C15 SING N N 23 A1D87 C16 C17 SING N N 24 A1D87 C17 C18 DOUB Y N 25 A1D87 C17 C22 SING Y N 26 A1D87 C18 C19 SING Y N 27 A1D87 F3 C22 SING N N 28 A1D87 C22 C21 DOUB Y N 29 A1D87 C19 F1 SING N N 30 A1D87 C19 C20 DOUB Y N 31 A1D87 N3 C15 SING N N 32 A1D87 N3 C11 SING N N 33 A1D87 C15 O2 DOUB N N 34 A1D87 C21 C20 SING Y N 35 A1D87 C20 F2 SING N N 36 A1D87 N6 C12 DOUB Y N 37 A1D87 N6 N5 SING Y N 38 A1D87 C11 C12 SING N N 39 A1D87 C14 N5 SING N N 40 A1D87 C12 N4 SING Y N 41 A1D87 N5 C13 SING Y N 42 A1D87 N4 C13 DOUB Y N 43 A1D87 C4 H1 SING N N 44 A1D87 C14 H2 SING N N 45 A1D87 C14 H3 SING N N 46 A1D87 C14 H4 SING N N 47 A1D87 C6 H5 SING N N 48 A1D87 C11 H6 SING N N 49 A1D87 C11 H7 SING N N 50 A1D87 C9 H8 SING N N 51 A1D87 C13 H9 SING N N 52 A1D87 N2 H10 SING N N 53 A1D87 C3 H11 SING N N 54 A1D87 C3 H12 SING N N 55 A1D87 C3 H13 SING N N 56 A1D87 C1 H14 SING N N 57 A1D87 C1 H15 SING N N 58 A1D87 C1 H16 SING N N 59 A1D87 C2 H17 SING N N 60 A1D87 C16 H18 SING N N 61 A1D87 C16 H19 SING N N 62 A1D87 C18 H20 SING N N 63 A1D87 C21 H21 SING N N 64 A1D87 C24 H22 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D87 InChI InChI 1.06 "InChI=1S/C25H22ClF3N8O2/c1-13(2)37-10-15-5-21(16(26)6-20(15)32-37)31-23-8-24(38)36(11-22-30-12-34(3)33-22)25(39)35(23)9-14-4-18(28)19(29)7-17(14)27/h4-8,10,12-13,31H,9,11H2,1-3H3" A1D87 InChIKey InChI 1.06 JGYXSDVCSGOBIX-UHFFFAOYSA-N A1D87 SMILES_CANONICAL CACTVS 3.385 "CC(C)n1cc2cc(NC3=CC(=O)N(Cc4ncn(C)n4)C(=O)N3Cc5cc(F)c(F)cc5F)c(Cl)cc2n1" A1D87 SMILES CACTVS 3.385 "CC(C)n1cc2cc(NC3=CC(=O)N(Cc4ncn(C)n4)C(=O)N3Cc5cc(F)c(F)cc5F)c(Cl)cc2n1" A1D87 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)n1cc2cc(c(cc2n1)Cl)NC3=CC(=O)N(C(=O)N3Cc4cc(c(cc4F)F)F)Cc5ncn(n5)C" A1D87 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)n1cc2cc(c(cc2n1)Cl)NC3=CC(=O)N(C(=O)N3Cc4cc(c(cc4F)F)F)Cc5ncn(n5)C" # _pdbx_chem_comp_identifier.comp_id A1D87 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[(6-chloranyl-2-propan-2-yl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D87 "Create component" 2024-06-12 PDBC A1D87 "Initial release" 2025-06-11 RCSB #