data_A1D8D # _chem_comp.id A1D8D _chem_comp.name "(2~{S})-3-[2-azanylethanoyl-[3-oxidanyl-5-[(5-oxidanylpyrimidin-2-yl)amino]phenyl]carbonyl-amino]-2-(3-bromanyl-5-~{tert}-butyl-phenyl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 Br N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-20 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.434 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D8D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZDF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D8D C10 C1 C 0 1 Y N N N N N 183.347 150.830 130.085 -3.032 -2.830 -0.034 C10 A1D8D 1 A1D8D C13 C2 C 0 1 N N N N N N 182.614 153.173 130.756 -1.703 -3.844 1.829 C13 A1D8D 2 A1D8D C15 C3 C 0 1 N N N N N N 183.912 153.569 130.017 -0.190 -4.008 1.671 C15 A1D8D 3 A1D8D C20 C4 C 0 1 Y N N N N N 176.423 147.035 136.306 0.927 0.629 0.097 C20 A1D8D 4 A1D8D C21 C5 C 0 1 Y N N N N N 175.612 146.074 136.895 1.720 -0.456 -0.237 C21 A1D8D 5 A1D8D C22 C6 C 0 1 Y N N N N N 176.095 144.790 137.120 3.047 -0.264 -0.593 C22 A1D8D 6 A1D8D C24 C7 C 0 1 Y N N N N N 178.228 145.438 136.163 2.796 2.108 -0.293 C24 A1D8D 7 A1D8D C01 C8 C 0 1 N N N N N N 181.714 147.439 133.433 -2.731 1.801 1.775 C01 A1D8D 8 A1D8D N02 N1 N 0 1 N N N N N N 178.896 147.947 133.829 -0.673 3.115 0.042 N02 A1D8D 9 A1D8D C03 C9 C 0 1 N N N N N N 179.798 149.130 133.371 -1.372 1.874 -0.297 C03 A1D8D 10 A1D8D C04 C10 C 0 1 N N S N N N 181.354 148.895 133.428 -1.666 1.088 0.982 C04 A1D8D 11 A1D8D O05 O1 O 0 1 N N N N N N 181.248 146.646 132.578 -3.114 2.893 1.428 O05 A1D8D 12 A1D8D O06 O2 O 0 1 N N N N N N 182.504 147.003 134.305 -3.254 1.223 2.868 O06 A1D8D 13 A1D8D C07 C11 C 0 1 Y N N N N N 182.054 149.606 132.243 -2.148 -0.294 0.623 C07 A1D8D 14 A1D8D C08 C12 C 0 1 Y N N N N N 182.768 148.842 131.321 -3.015 -0.469 -0.439 C08 A1D8D 15 A1D8D C09 C13 C 0 1 Y N N N N N 183.412 149.448 130.244 -3.457 -1.738 -0.769 C09 A1D8D 16 A1D8D C11 C14 C 0 1 Y N N N N N 182.641 151.617 131.002 -2.166 -2.654 1.028 C11 A1D8D 17 A1D8D C12 C15 C 0 1 Y N N N N N 181.995 151.007 132.080 -1.724 -1.386 1.357 C12 A1D8D 18 A1D8D C14 C16 C 0 1 N N N N N N 182.540 153.955 132.044 -2.408 -5.104 1.323 C14 A1D8D 19 A1D8D C16 C17 C 0 1 N N N N N N 181.412 153.551 129.860 -2.041 -3.629 3.305 C16 A1D8D 20 A1D8D C18 C18 C 0 1 N N N N N N 178.619 147.816 135.274 0.619 3.079 0.426 C18 A1D8D 21 A1D8D C19 C19 C 0 1 Y N N N N N 177.736 146.727 135.929 1.462 1.918 0.071 C19 A1D8D 22 A1D8D C23 C20 C 0 1 Y N N N N N 177.410 144.474 136.752 3.586 1.015 -0.616 C23 A1D8D 23 A1D8D O25 O3 O 0 1 N N N N N N 179.105 148.582 135.969 1.090 3.999 1.064 O25 A1D8D 24 A1D8D N26 N2 N 0 1 N N N N N N 177.930 143.141 136.980 4.923 1.204 -0.981 N26 A1D8D 25 A1D8D C27 C21 C 0 1 Y N N N N N 179.230 142.762 136.332 5.864 0.224 -0.698 C27 A1D8D 26 A1D8D N28 N3 N 0 1 Y N N N N N 179.219 142.122 135.214 5.490 -0.855 -0.027 N28 A1D8D 27 A1D8D C29 C22 C 0 1 Y N N N N N 180.364 141.784 134.630 6.359 -1.811 0.256 C29 A1D8D 28 A1D8D C30 C23 C 0 1 Y N N N N N 181.576 142.115 135.213 7.678 -1.672 -0.161 C30 A1D8D 29 A1D8D C31 C24 C 0 1 Y N N N N N 181.538 142.801 136.408 8.034 -0.526 -0.863 C31 A1D8D 30 A1D8D N32 N4 N 0 1 Y N N N N N 180.373 143.104 136.930 7.111 0.390 -1.110 N32 A1D8D 31 A1D8D O33 O4 O 0 1 N N N N N N 182.802 141.765 134.609 8.599 -2.635 0.112 O33 A1D8D 32 A1D8D O34 O5 O 0 1 N N N N N N 174.271 146.401 137.272 1.198 -1.710 -0.216 O34 A1D8D 33 A1D8D C35 C25 C 0 1 N N N N N N 178.375 147.097 132.748 -1.321 4.295 -0.029 C35 A1D8D 34 A1D8D N36 N5 N 0 1 N N N N N N 177.926 144.799 132.109 -3.149 5.750 -0.697 N36 A1D8D 35 A1D8D C37 C26 C 0 1 N N N N N N 177.466 145.889 132.921 -2.732 4.348 -0.554 C37 A1D8D 36 A1D8D O38 O6 O 0 1 N N N N N N 178.704 147.365 131.649 -0.769 5.313 0.330 O38 A1D8D 37 A1D8D BR17 BR1 BR 0 0 N N N N N N 184.381 148.391 128.987 -4.641 -1.979 -2.223 BR17 A1D8D 38 A1D8D H1 H1 H 0 1 N N N N N N 183.845 151.298 129.248 -3.381 -3.821 -0.289 H1 A1D8D 39 A1D8D H2 H2 H 0 1 N N N N N N 184.782 153.309 130.638 0.317 -3.162 2.135 H2 A1D8D 40 A1D8D H3 H3 H 0 1 N N N N N N 183.969 153.028 129.061 0.128 -4.932 2.154 H3 A1D8D 41 A1D8D H4 H4 H 0 1 N N N N N N 183.909 154.652 129.826 0.062 -4.046 0.611 H4 A1D8D 42 A1D8D H5 H5 H 0 1 N N N N N N 176.037 148.030 136.137 -0.106 0.479 0.374 H5 A1D8D 43 A1D8D H6 H6 H 0 1 N N N N N N 175.462 144.042 137.575 3.663 -1.113 -0.853 H6 A1D8D 44 A1D8D H7 H7 H 0 1 N N N N N N 179.242 145.189 135.887 3.211 3.105 -0.323 H7 A1D8D 45 A1D8D H8 H8 H 0 1 N N N N N N 179.567 149.993 134.013 -2.308 2.111 -0.802 H8 A1D8D 46 A1D8D H9 H9 H 0 1 N N N N N N 179.534 149.367 132.330 -0.745 1.273 -0.957 H9 A1D8D 47 A1D8D H10 H10 H 0 1 N N N N N N 181.724 149.348 134.359 -0.758 1.012 1.579 H10 A1D8D 48 A1D8D H11 H11 H 0 1 N N N N N N 182.638 146.072 134.174 -3.934 1.718 3.344 H11 A1D8D 49 A1D8D H12 H12 H 0 1 N N N N N N 182.823 147.770 131.443 -3.347 0.384 -1.012 H12 A1D8D 50 A1D8D H13 H13 H 0 1 N N N N N N 181.449 151.609 132.791 -1.047 -1.249 2.187 H13 A1D8D 51 A1D8D H14 H14 H 0 1 N N N N N N 183.394 153.689 132.685 -2.167 -5.258 0.271 H14 A1D8D 52 A1D8D H15 H15 H 0 1 N N N N N N 182.570 155.032 131.821 -2.073 -5.965 1.902 H15 A1D8D 53 A1D8D H16 H16 H 0 1 N N N N N N 181.602 153.715 132.565 -3.486 -4.988 1.435 H16 A1D8D 54 A1D8D H17 H17 H 0 1 N N N N N N 180.475 153.277 130.368 -3.119 -3.512 3.418 H17 A1D8D 55 A1D8D H18 H18 H 0 1 N N N N N N 181.423 154.634 129.670 -1.707 -4.489 3.884 H18 A1D8D 56 A1D8D H19 H19 H 0 1 N N N N N N 181.483 153.010 128.905 -1.539 -2.731 3.666 H19 A1D8D 57 A1D8D H20 H20 H 0 1 N N N N N N 177.435 142.489 137.555 5.192 2.019 -1.432 H20 A1D8D 58 A1D8D H21 H21 H 0 1 N N N N N N 180.349 141.247 133.693 6.048 -2.688 0.803 H21 A1D8D 59 A1D8D H22 H22 H 0 1 N N N N N N 182.453 143.085 136.907 9.049 -0.385 -1.202 H22 A1D8D 60 A1D8D H23 H23 H 0 1 N N N N N N 183.521 142.073 135.149 8.668 -3.318 -0.569 H23 A1D8D 61 A1D8D H24 H24 H 0 1 N N N N N N 173.855 145.639 137.658 0.875 -2.016 -1.074 H24 A1D8D 62 A1D8D H25 H25 H 0 1 N N N N N N 177.321 144.013 132.232 -4.093 5.813 -1.048 H25 A1D8D 63 A1D8D H26 H26 H 0 1 N N N N N N 177.923 145.075 131.148 -3.054 6.246 0.176 H26 A1D8D 64 A1D8D H28 H28 H 0 1 N N N N N N 176.443 146.159 132.620 -2.778 3.855 -1.525 H28 A1D8D 65 A1D8D H29 H29 H 0 1 N N N N N N 177.469 145.581 133.977 -3.399 3.841 0.143 H29 A1D8D 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D8D BR17 C09 SING N N 1 A1D8D C16 C13 SING N N 2 A1D8D C15 C13 SING N N 3 A1D8D C10 C09 DOUB Y N 4 A1D8D C10 C11 SING Y N 5 A1D8D C09 C08 SING Y N 6 A1D8D C13 C11 SING N N 7 A1D8D C13 C14 SING N N 8 A1D8D C11 C12 DOUB Y N 9 A1D8D C08 C07 DOUB Y N 10 A1D8D O38 C35 DOUB N N 11 A1D8D C12 C07 SING Y N 12 A1D8D N36 C37 SING N N 13 A1D8D C07 C04 SING N N 14 A1D8D O05 C01 DOUB N N 15 A1D8D C35 C37 SING N N 16 A1D8D C35 N02 SING N N 17 A1D8D C03 C04 SING N N 18 A1D8D C03 N02 SING N N 19 A1D8D C04 C01 SING N N 20 A1D8D C01 O06 SING N N 21 A1D8D N02 C18 SING N N 22 A1D8D O33 C30 SING N N 23 A1D8D C29 C30 DOUB Y N 24 A1D8D C29 N28 SING Y N 25 A1D8D C30 C31 SING Y N 26 A1D8D N28 C27 DOUB Y N 27 A1D8D C18 C19 SING N N 28 A1D8D C18 O25 DOUB N N 29 A1D8D C19 C24 DOUB Y N 30 A1D8D C19 C20 SING Y N 31 A1D8D C24 C23 SING Y N 32 A1D8D C20 C21 DOUB Y N 33 A1D8D C27 N32 SING Y N 34 A1D8D C27 N26 SING N N 35 A1D8D C31 N32 DOUB Y N 36 A1D8D C23 N26 SING N N 37 A1D8D C23 C22 DOUB Y N 38 A1D8D C21 C22 SING Y N 39 A1D8D C21 O34 SING N N 40 A1D8D C10 H1 SING N N 41 A1D8D C15 H2 SING N N 42 A1D8D C15 H3 SING N N 43 A1D8D C15 H4 SING N N 44 A1D8D C20 H5 SING N N 45 A1D8D C22 H6 SING N N 46 A1D8D C24 H7 SING N N 47 A1D8D C03 H8 SING N N 48 A1D8D C03 H9 SING N N 49 A1D8D C04 H10 SING N N 50 A1D8D O06 H11 SING N N 51 A1D8D C08 H12 SING N N 52 A1D8D C12 H13 SING N N 53 A1D8D C14 H14 SING N N 54 A1D8D C14 H15 SING N N 55 A1D8D C14 H16 SING N N 56 A1D8D C16 H17 SING N N 57 A1D8D C16 H18 SING N N 58 A1D8D C16 H19 SING N N 59 A1D8D N26 H20 SING N N 60 A1D8D C29 H21 SING N N 61 A1D8D C31 H22 SING N N 62 A1D8D O33 H23 SING N N 63 A1D8D O34 H24 SING N N 64 A1D8D N36 H25 SING N N 65 A1D8D N36 H26 SING N N 66 A1D8D C37 H28 SING N N 67 A1D8D C37 H29 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D8D InChI InChI 1.06 "InChI=1S/C26H28BrN5O6/c1-26(2,3)16-4-14(5-17(27)8-16)21(24(37)38)13-32(22(35)10-28)23(36)15-6-18(9-19(33)7-15)31-25-29-11-20(34)12-30-25/h4-9,11-12,21,33-34H,10,13,28H2,1-3H3,(H,37,38)(H,29,30,31)/t21-/m1/s1" A1D8D InChIKey InChI 1.06 HZJOPOJFLMXGKA-OAQYLSRUSA-N A1D8D SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1cc(Br)cc(c1)[C@@H](CN(C(=O)CN)C(=O)c2cc(O)cc(Nc3ncc(O)cn3)c2)C(O)=O" A1D8D SMILES CACTVS 3.385 "CC(C)(C)c1cc(Br)cc(c1)[CH](CN(C(=O)CN)C(=O)c2cc(O)cc(Nc3ncc(O)cn3)c2)C(O)=O" A1D8D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(cc(c1)Br)[C@@H](CN(C(=O)CN)C(=O)c2cc(cc(c2)O)Nc3ncc(cn3)O)C(=O)O" A1D8D SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(cc(c1)Br)C(CN(C(=O)CN)C(=O)c2cc(cc(c2)O)Nc3ncc(cn3)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1D8D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-[2-azanylethanoyl-[3-oxidanyl-5-[(5-oxidanylpyrimidin-2-yl)amino]phenyl]carbonyl-amino]-2-(3-bromanyl-5-~{tert}-butyl-phenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D8D "Create component" 2024-05-20 PDBC A1D8D "Initial release" 2025-10-22 RCSB #