data_A1D8Q # _chem_comp.id A1D8Q _chem_comp.name "(3~{Z})-3-[[4-[bis(fluoranyl)methoxy]-3-cyclopentyloxy-phenyl]methylidene]-6-oxidanyl-1~{H}-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H19 F2 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-05 _chem_comp.pdbx_modified_date 2025-02-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 387.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D8Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZQW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D8Q C4 C1 C 0 1 Y N N N N N -21.808 0.813 29.349 -4.362 1.441 1.044 C4 A1D8Q 1 A1D8Q C5 C2 C 0 1 Y N N N N N -23.021 1.340 28.921 -3.737 0.465 0.273 C5 A1D8Q 2 A1D8Q C6 C3 C 0 1 Y N N N N N -24.017 1.599 29.886 -4.493 -0.388 -0.542 C6 A1D8Q 3 A1D8Q C3 C4 C 0 1 Y N N N N N -21.590 0.551 30.693 -5.735 1.566 1.009 C3 A1D8Q 4 A1D8Q C2 C5 C 0 1 Y N N N N N -22.586 0.814 31.630 -6.491 0.719 0.206 C2 A1D8Q 5 A1D8Q C1 C6 C 0 1 Y N N N N N -23.811 1.340 31.237 -5.875 -0.247 -0.571 C1 A1D8Q 6 A1D8Q C7 C7 C 0 1 N N N N N N -23.575 1.734 27.634 -2.321 0.073 0.090 C7 A1D8Q 7 A1D8Q C8 C8 C 0 1 N N N N N N -24.958 2.237 27.928 -2.356 -1.041 -0.873 C8 A1D8Q 8 A1D8Q N9 N1 N 0 1 N N N N N N -25.141 2.126 29.265 -3.639 -1.264 -1.203 N9 A1D8Q 9 A1D8Q O10 O1 O 0 1 N N N N N N -25.785 2.673 27.129 -1.391 -1.653 -1.295 O10 A1D8Q 10 A1D8Q C11 C9 C 0 1 N N N N N N -22.894 1.607 26.479 -1.223 0.625 0.682 C11 A1D8Q 11 A1D8Q O12 O2 O 0 1 N N N N N N -22.354 0.572 32.954 -7.844 0.848 0.177 O12 A1D8Q 12 A1D8Q C13 C10 C 0 1 Y N N N N N -23.191 1.985 25.093 0.090 -0.009 0.527 C13 A1D8Q 13 A1D8Q C14 C11 C 0 1 Y N N N N N -24.255 2.807 24.709 1.242 0.780 0.404 C14 A1D8Q 14 A1D8Q C15 C12 C 0 1 Y N N N N N -24.437 3.151 23.381 2.475 0.176 0.258 C15 A1D8Q 15 A1D8Q C16 C13 C 0 1 Y N N N N N -23.544 2.668 22.404 2.572 -1.215 0.234 C16 A1D8Q 16 A1D8Q C17 C14 C 0 1 Y N N N N N -22.489 1.852 22.779 1.432 -1.998 0.355 C17 A1D8Q 17 A1D8Q C18 C15 C 0 1 Y N N N N N -22.320 1.517 24.111 0.198 -1.406 0.507 C18 A1D8Q 18 A1D8Q O19 O3 O 0 1 N N N N N N -23.796 3.059 21.110 3.787 -1.805 0.090 O19 A1D8Q 19 A1D8Q O20 O4 O 0 1 N N N N N N -25.455 3.954 22.926 3.594 0.939 0.138 O20 A1D8Q 20 A1D8Q C21 C16 C 0 1 N N N N N N -22.972 2.696 20.086 3.816 -3.234 0.073 C21 A1D8Q 21 A1D8Q F22 F1 F 0 1 N N N N N N -21.728 3.180 20.237 3.299 -3.725 1.277 F22 A1D8Q 22 A1D8Q F23 F2 F 0 1 N N N N N N -22.957 1.364 19.900 3.041 -3.703 -0.993 F23 A1D8Q 23 A1D8Q C24 C17 C 0 1 N N N N N N -26.573 4.234 23.817 3.437 2.351 0.288 C24 A1D8Q 24 A1D8Q C25 C18 C 0 1 N N N N N N -26.310 5.439 24.708 4.766 2.985 0.735 C25 A1D8Q 25 A1D8Q C26 C19 C 0 1 N N N N N N -26.940 6.628 24.005 5.169 3.987 -0.366 C26 A1D8Q 26 A1D8Q C27 C20 C 0 1 N N N N N N -27.852 6.084 22.919 3.832 4.343 -1.063 C27 A1D8Q 27 A1D8Q C28 C21 C 0 1 N N N N N N -27.815 4.567 23.009 3.079 2.990 -1.070 C28 A1D8Q 28 A1D8Q H3 H1 H 0 1 N N N N N N -21.030 0.606 28.629 -3.774 2.095 1.671 H3 A1D8Q 29 A1D8Q H2 H2 H 0 1 N N N N N N -20.644 0.141 31.014 -6.224 2.322 1.606 H2 A1D8Q 30 A1D8Q H1 H3 H 0 1 N N N N N N -24.584 1.543 31.963 -6.470 -0.897 -1.195 H1 A1D8Q 31 A1D8Q H4 H4 H 0 1 N N N N N N -25.978 2.390 29.744 -3.933 -1.949 -1.824 H4 A1D8Q 32 A1D8Q H5 H5 H 0 1 N N N N N N -21.933 1.129 26.597 -1.320 1.528 1.266 H5 A1D8Q 33 A1D8Q H6 H6 H 0 1 N N N N N N -21.480 0.216 33.063 -8.166 1.457 -0.501 H6 A1D8Q 34 A1D8Q H7 H7 H 0 1 N N N N N N -24.941 3.177 25.456 1.165 1.857 0.423 H7 A1D8Q 35 A1D8Q H8 H8 H 0 1 N N N N N N -21.801 1.479 22.035 1.514 -3.075 0.335 H8 A1D8Q 36 A1D8Q H9 H9 H 0 1 N N N N N N -21.496 0.880 24.395 -0.687 -2.018 0.602 H9 A1D8Q 37 A1D8Q H10 H10 H 0 1 N N N N N N -23.385 3.145 19.171 4.844 -3.575 -0.047 H10 A1D8Q 38 A1D8Q H11 H11 H 0 1 N N N N N N -26.778 3.357 24.449 2.657 2.564 1.019 H11 A1D8Q 39 A1D8Q H12 H12 H 0 1 N N N N N N -26.771 5.291 25.696 4.630 3.506 1.683 H12 A1D8Q 40 A1D8Q H13 H13 H 0 1 N N N N N N -25.228 5.596 24.828 5.531 2.215 0.838 H13 A1D8Q 41 A1D8Q H14 H14 H 0 1 N N N N N N -27.524 7.223 24.723 5.619 4.877 0.074 H14 A1D8Q 42 A1D8Q H15 H15 H 0 1 N N N N N N -26.157 7.258 23.558 5.855 3.521 -1.073 H15 A1D8Q 43 A1D8Q H16 H16 H 0 1 N N N N N N -28.879 6.445 23.076 3.283 5.088 -0.488 H16 A1D8Q 44 A1D8Q H17 H17 H 0 1 N N N N N N -27.496 6.410 21.931 4.008 4.692 -2.081 H17 A1D8Q 45 A1D8Q H18 H18 H 0 1 N N N N N N -28.715 4.191 23.517 3.428 2.363 -1.890 H18 A1D8Q 46 A1D8Q H19 H19 H 0 1 N N N N N N -27.749 4.125 22.004 2.003 3.152 -1.143 H19 A1D8Q 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D8Q C1 C2 DOUB Y N 1 A1D8Q C2 C3 SING Y N 2 A1D8Q C3 C4 DOUB Y N 3 A1D8Q C4 C5 SING Y N 4 A1D8Q C5 C6 DOUB Y N 5 A1D8Q C6 C1 SING Y N 6 A1D8Q C5 C7 SING N N 7 A1D8Q C7 C8 SING N N 8 A1D8Q C8 N9 SING N N 9 A1D8Q N9 C6 SING N N 10 A1D8Q C8 O10 DOUB N N 11 A1D8Q C7 C11 DOUB N Z 12 A1D8Q C2 O12 SING N N 13 A1D8Q C11 C13 SING N N 14 A1D8Q C13 C14 DOUB Y N 15 A1D8Q C14 C15 SING Y N 16 A1D8Q C15 C16 DOUB Y N 17 A1D8Q C16 C17 SING Y N 18 A1D8Q C17 C18 DOUB Y N 19 A1D8Q C18 C13 SING Y N 20 A1D8Q C16 O19 SING N N 21 A1D8Q C15 O20 SING N N 22 A1D8Q O19 C21 SING N N 23 A1D8Q C21 F22 SING N N 24 A1D8Q C21 F23 SING N N 25 A1D8Q O20 C24 SING N N 26 A1D8Q C24 C25 SING N N 27 A1D8Q C25 C26 SING N N 28 A1D8Q C26 C27 SING N N 29 A1D8Q C27 C28 SING N N 30 A1D8Q C28 C24 SING N N 31 A1D8Q C4 H3 SING N N 32 A1D8Q C3 H2 SING N N 33 A1D8Q C1 H1 SING N N 34 A1D8Q N9 H4 SING N N 35 A1D8Q C11 H5 SING N N 36 A1D8Q O12 H6 SING N N 37 A1D8Q C14 H7 SING N N 38 A1D8Q C17 H8 SING N N 39 A1D8Q C18 H9 SING N N 40 A1D8Q C21 H10 SING N N 41 A1D8Q C24 H11 SING N N 42 A1D8Q C25 H12 SING N N 43 A1D8Q C25 H13 SING N N 44 A1D8Q C26 H14 SING N N 45 A1D8Q C26 H15 SING N N 46 A1D8Q C27 H16 SING N N 47 A1D8Q C27 H17 SING N N 48 A1D8Q C28 H18 SING N N 49 A1D8Q C28 H19 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D8Q InChI InChI 1.06 "InChI=1S/C21H19F2NO4/c22-21(23)28-18-8-5-12(10-19(18)27-14-3-1-2-4-14)9-16-15-7-6-13(25)11-17(15)24-20(16)26/h5-11,14,21,25H,1-4H2,(H,24,26)/b16-9-" A1D8Q InChIKey InChI 1.06 YQSVXQQLXMURHB-SXGWCWSVSA-N A1D8Q SMILES_CANONICAL CACTVS 3.385 "Oc1ccc\2c(NC(=O)C\2=C\c3ccc(OC(F)F)c(OC4CCCC4)c3)c1" A1D8Q SMILES CACTVS 3.385 "Oc1ccc2c(NC(=O)C2=Cc3ccc(OC(F)F)c(OC4CCCC4)c3)c1" A1D8Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1/C=C\2/c3ccc(cc3NC2=O)O)OC4CCCC4)OC(F)F" A1D8Q SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C=C2c3ccc(cc3NC2=O)O)OC4CCCC4)OC(F)F" # _pdbx_chem_comp_identifier.comp_id A1D8Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{Z})-3-[[4-[bis(fluoranyl)methoxy]-3-cyclopentyloxy-phenyl]methylidene]-6-oxidanyl-1~{H}-indol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D8Q "Create component" 2024-06-05 PDBC A1D8Q "Initial release" 2025-02-12 RCSB #