data_A1D9A # _chem_comp.id A1D9A _chem_comp.name "(2~{S})-5-[bis(azanyl)methylideneamino]-2-[[5-[bis(4-chlorophenyl)methyl]-3-methyl-thiophen-2-yl]carbonylamino]pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 Cl2 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms JR14a _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-17 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9A N1 N1 N 0 1 N N N N N N ? ? ? 2.801 1.573 0.284 N1 A1D9A 1 A1D9A N3 N2 N 0 1 N N N N N N ? ? ? 3.769 -3.344 -2.458 N3 A1D9A 2 A1D9A C4 C1 C 0 1 Y N N N N N ? ? ? -1.533 0.745 1.676 C4 A1D9A 3 A1D9A C5 C2 C 0 1 Y N N N N N ? ? ? -1.173 1.347 2.815 C5 A1D9A 4 A1D9A C6 C3 C 0 1 N N N N N N ? ? ? -2.906 0.186 1.403 C6 A1D9A 5 A1D9A C7 C4 C 0 1 Y N N N N N ? ? ? -3.503 0.883 0.207 C7 A1D9A 6 A1D9A C8 C5 C 0 1 Y N N N N N ? ? ? -2.865 0.825 -1.017 C8 A1D9A 7 A1D9A C10 C6 C 0 1 Y N N N N N ? ? ? -4.600 2.162 -1.985 C10 A1D9A 8 A1D9A C13 C7 C 0 1 Y N N N N N ? ? ? -2.800 -1.291 1.122 C13 A1D9A 9 A1D9A C15 C8 C 0 1 Y N N N N N ? ? ? -3.500 -3.539 1.555 C15 A1D9A 10 A1D9A C17 C9 C 0 1 Y N N N N N ? ? ? -1.814 -3.105 -0.090 C17 A1D9A 11 A1D9A C20 C10 C 0 1 N N S N N N ? ? ? 4.201 1.927 0.039 C20 A1D9A 12 A1D9A C21 C11 C 0 1 N N N N N N ? ? ? 4.790 0.982 -1.011 C21 A1D9A 13 A1D9A C22 C12 C 0 1 N N N N N N ? ? ? 4.824 -0.442 -0.453 C22 A1D9A 14 A1D9A C24 C13 C 0 1 N N N N N N ? ? ? 4.695 -3.676 -1.498 C24 A1D9A 15 A1D9A CL1 CL1 CL 0 0 N N N N N N ? ? ? -5.288 2.965 -3.362 CL1 A1D9A 16 A1D9A CL2 CL2 CL 0 0 N N N N N N ? ? ? -2.485 -5.701 0.281 CL2 A1D9A 17 A1D9A C1 C14 C 0 1 N N N N N N ? ? ? 0.729 2.491 4.045 C1 A1D9A 18 A1D9A O1 O1 O 0 1 N N N N N N ? ? ? 2.865 2.459 2.321 O1 A1D9A 19 A1D9A S1 S1 S 0 1 Y N N N N N ? ? ? -0.234 0.702 0.571 S1 A1D9A 20 A1D9A C2 C15 C 0 1 Y N N N N N ? ? ? 0.128 1.790 2.854 C2 A1D9A 21 A1D9A N2 N3 N 0 1 N N N N N N ? ? ? 5.445 -2.750 -0.969 N2 A1D9A 22 A1D9A O2 O2 O 0 1 N N N N N N ? ? ? 3.271 3.996 -0.600 O2 A1D9A 23 A1D9A C3 C16 C 0 1 Y N N N N N ? ? ? 0.822 1.530 1.706 C3 A1D9A 24 A1D9A O3 O3 O 0 1 N N N N N N ? ? ? 5.473 3.889 -0.754 O3 A1D9A 25 A1D9A N4 N4 N 0 1 N N N N N N ? ? ? 4.829 -4.983 -1.095 N4 A1D9A 26 A1D9A C9 C17 C 0 1 Y N N N N N ? ? ? -3.412 1.464 -2.114 C9 A1D9A 27 A1D9A C11 C18 C 0 1 Y N N N N N ? ? ? -5.242 2.215 -0.761 C11 A1D9A 28 A1D9A C12 C19 C 0 1 Y N N N N N ? ? ? -4.693 1.576 0.335 C12 A1D9A 29 A1D9A C14 C20 C 0 1 Y N N N N N ? ? ? -3.596 -2.184 1.813 C14 A1D9A 30 A1D9A C16 C21 C 0 1 Y N N N N N ? ? ? -2.606 -4.000 0.605 C16 A1D9A 31 A1D9A C18 C22 C 0 1 Y N N N N N ? ? ? -1.911 -1.751 0.169 C18 A1D9A 32 A1D9A C19 C23 C 0 1 N N N N N N ? ? ? 2.224 1.884 1.461 C19 A1D9A 33 A1D9A C23 C24 C 0 1 N N N N N N ? ? ? 5.413 -1.387 -1.503 C23 A1D9A 34 A1D9A C25 C25 C 0 1 N N N N N N ? ? ? 4.281 3.346 -0.462 C25 A1D9A 35 A1D9A H1 H1 H 0 1 N N N N N N ? ? ? 2.289 1.119 -0.403 H1 A1D9A 36 A1D9A H2 H2 H 0 1 N N N N N N ? ? ? 3.287 -4.042 -2.929 H2 A1D9A 37 A1D9A H3 H3 H 0 1 N N N N N N ? ? ? 3.598 -2.412 -2.665 H3 A1D9A 38 A1D9A H4 H4 H 0 1 N N N N N N ? ? ? -1.854 1.476 3.643 H4 A1D9A 39 A1D9A H5 H5 H 0 1 N N N N N N ? ? ? -3.543 0.346 2.272 H5 A1D9A 40 A1D9A H6 H6 H 0 1 N N N N N N ? ? ? -1.938 0.281 -1.117 H6 A1D9A 41 A1D9A H7 H7 H 0 1 N N N N N N ? ? ? -4.122 -4.237 2.096 H7 A1D9A 42 A1D9A H8 H8 H 0 1 N N N N N N ? ? ? -1.119 -3.464 -0.835 H8 A1D9A 43 A1D9A H9 H9 H 0 1 N N N N N N ? ? ? 4.767 1.837 0.967 H9 A1D9A 44 A1D9A H10 H10 H 0 1 N N N N N N ? ? ? 4.172 1.006 -1.908 H10 A1D9A 45 A1D9A H11 H11 H 0 1 N N N N N N ? ? ? 5.803 1.300 -1.258 H11 A1D9A 46 A1D9A H12 H12 H 0 1 N N N N N N ? ? ? 5.442 -0.466 0.445 H12 A1D9A 47 A1D9A H13 H13 H 0 1 N N N N N N ? ? ? 3.811 -0.760 -0.206 H13 A1D9A 48 A1D9A H14 H14 H 0 1 N N N N N N ? ? ? 1.170 1.755 4.716 H14 A1D9A 49 A1D9A H15 H15 H 0 1 N N N N N N ? ? ? 1.500 3.184 3.708 H15 A1D9A 50 A1D9A H16 H16 H 0 1 N N N N N N ? ? ? -0.049 3.043 4.573 H16 A1D9A 51 A1D9A H18 H18 H 0 1 N N N N N N ? ? ? 5.473 4.802 -1.072 H18 A1D9A 52 A1D9A H19 H19 H 0 1 N N N N N N ? ? ? 4.271 -5.672 -1.489 H19 A1D9A 53 A1D9A H20 H20 H 0 1 N N N N N N ? ? ? 5.483 -5.218 -0.418 H20 A1D9A 54 A1D9A H21 H21 H 0 1 N N N N N N ? ? ? -2.913 1.419 -3.070 H21 A1D9A 55 A1D9A H22 H22 H 0 1 N N N N N N ? ? ? -6.169 2.760 -0.660 H22 A1D9A 56 A1D9A H23 H23 H 0 1 N N N N N N ? ? ? -5.194 1.617 1.291 H23 A1D9A 57 A1D9A H24 H24 H 0 1 N N N N N N ? ? ? -4.294 -1.824 2.555 H24 A1D9A 58 A1D9A H25 H25 H 0 1 N N N N N N ? ? ? -1.291 -1.052 -0.374 H25 A1D9A 59 A1D9A H26 H26 H 0 1 N N N N N N ? ? ? 4.795 -1.363 -2.400 H26 A1D9A 60 A1D9A H27 H27 H 0 1 N N N N N N ? ? ? 6.426 -1.069 -1.750 H27 A1D9A 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9A CL1 C10 SING N N 1 A1D9A C10 C9 DOUB Y N 2 A1D9A C10 C11 SING Y N 3 A1D9A C9 C8 SING Y N 4 A1D9A C11 C12 DOUB Y N 5 A1D9A C17 C18 DOUB Y N 6 A1D9A C17 C16 SING Y N 7 A1D9A CL2 C16 SING N N 8 A1D9A C18 C13 SING Y N 9 A1D9A C8 C7 DOUB Y N 10 A1D9A C12 C7 SING Y N 11 A1D9A C16 C15 DOUB Y N 12 A1D9A C7 C6 SING N N 13 A1D9A C13 C6 SING N N 14 A1D9A C13 C14 DOUB Y N 15 A1D9A C15 C14 SING Y N 16 A1D9A C6 C4 SING N N 17 A1D9A C4 S1 SING Y N 18 A1D9A C4 C5 DOUB Y N 19 A1D9A S1 C3 SING Y N 20 A1D9A O2 C25 DOUB N N 21 A1D9A C5 C2 SING Y N 22 A1D9A C25 O3 SING N N 23 A1D9A C25 C20 SING N N 24 A1D9A C3 C2 DOUB Y N 25 A1D9A C3 C19 SING N N 26 A1D9A N1 C19 SING N N 27 A1D9A N1 C20 SING N N 28 A1D9A C2 C1 SING N N 29 A1D9A C19 O1 DOUB N N 30 A1D9A C20 C21 SING N N 31 A1D9A C22 C23 SING N N 32 A1D9A C22 C21 SING N N 33 A1D9A C23 N2 SING N N 34 A1D9A N2 C24 DOUB N N 35 A1D9A C24 N3 SING N N 36 A1D9A C24 N4 SING N N 37 A1D9A N1 H1 SING N N 38 A1D9A N3 H2 SING N N 39 A1D9A N3 H3 SING N N 40 A1D9A C5 H4 SING N N 41 A1D9A C6 H5 SING N N 42 A1D9A C8 H6 SING N N 43 A1D9A C15 H7 SING N N 44 A1D9A C17 H8 SING N N 45 A1D9A C20 H9 SING N N 46 A1D9A C21 H10 SING N N 47 A1D9A C21 H11 SING N N 48 A1D9A C22 H12 SING N N 49 A1D9A C22 H13 SING N N 50 A1D9A C1 H14 SING N N 51 A1D9A C1 H15 SING N N 52 A1D9A C1 H16 SING N N 53 A1D9A O3 H18 SING N N 54 A1D9A N4 H19 SING N N 55 A1D9A N4 H20 SING N N 56 A1D9A C9 H21 SING N N 57 A1D9A C11 H22 SING N N 58 A1D9A C12 H23 SING N N 59 A1D9A C14 H24 SING N N 60 A1D9A C18 H25 SING N N 61 A1D9A C23 H26 SING N N 62 A1D9A C23 H27 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9A InChI InChI 1.06 "InChI=1S/C25H26Cl2N4O3S/c1-14-13-20(21(15-4-8-17(26)9-5-15)16-6-10-18(27)11-7-16)35-22(14)23(32)31-19(24(33)34)3-2-12-30-25(28)29/h4-11,13,19,21H,2-3,12H2,1H3,(H,31,32)(H,33,34)(H4,28,29,30)/t19-/m0/s1" A1D9A InChIKey InChI 1.06 OHRIKWUZKGNQKQ-IBGZPJMESA-N A1D9A SMILES_CANONICAL CACTVS 3.385 "Cc1cc(sc1C(=O)N[C@@H](CCCN=C(N)N)C(O)=O)C(c2ccc(Cl)cc2)c3ccc(Cl)cc3" A1D9A SMILES CACTVS 3.385 "Cc1cc(sc1C(=O)N[CH](CCCN=C(N)N)C(O)=O)C(c2ccc(Cl)cc2)c3ccc(Cl)cc3" A1D9A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(sc1C(=O)N[C@@H](CCCN=C(N)N)C(=O)O)C(c2ccc(cc2)Cl)c3ccc(cc3)Cl" A1D9A SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(sc1C(=O)NC(CCCN=C(N)N)C(=O)O)C(c2ccc(cc2)Cl)c3ccc(cc3)Cl" # _pdbx_chem_comp_identifier.comp_id A1D9A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-[bis(azanyl)methylideneamino]-2-[[5-[bis(4-chlorophenyl)methyl]-3-methyl-thiophen-2-yl]carbonylamino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9A "Create component" 2024-06-17 PDBC A1D9A "Modify synonyms" 2024-07-19 PDBC A1D9A "Modify coordinates" 2025-04-14 RCSB A1D9A "Initial release" 2025-04-23 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D9A _pdbx_chem_comp_synonyms.name JR14a _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #