data_A1D9H # _chem_comp.id A1D9H _chem_comp.name "tert-butyl N-[(2S)-1-[[(2S)-1-[[(2S)-1-azanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H41 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-27 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 515.645 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IK2 _chem_comp.pdbx_subcomponent_list "BOC TDD PHE 79I" _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9H O1 O1 O 0 1 N N N N N N 19.720 37.597 -13.244 4.880 1.207 0.749 O1 BOC 1 A1D9H C1 C15 C 0 1 N N N N N N 19.841 38.039 -12.124 4.639 0.419 -0.144 C BOC 2 A1D9H O2 O2 O 0 1 N N N N N N 19.671 39.320 -11.749 5.642 -0.264 -0.728 O2 BOC 3 A1D9H C2 C22 C 0 1 N N N N N N 19.193 40.364 -12.681 6.985 -0.008 -0.240 CT BOC 4 A1D9H C4 C1 C 0 1 N N N N N N 17.821 39.967 -13.180 7.983 -0.869 -1.018 C1 BOC 5 A1D9H C5 C2 C 0 1 N N N N N N 20.183 40.498 -13.819 7.326 1.470 -0.436 C2 BOC 6 A1D9H C3 C26 C 0 1 N N N N N N 19.127 41.636 -11.866 7.062 -0.357 1.247 C3 BOC 7 A1D9H N1 N1 N 0 1 N N N N N N 20.161 37.292 -11.054 3.368 0.225 -0.546 N TDD 8 A1D9H C6 C3 C 0 1 N N S N N N 20.378 35.862 -11.197 2.276 0.964 0.093 CA TDD 9 A1D9H C7 C4 C 0 1 N N N N N N 21.834 35.440 -10.829 2.124 2.331 -0.577 CB TDD 10 A1D9H C8 C5 C 0 1 N N N N N N 22.145 35.755 -9.363 1.658 2.142 -2.022 CG1 TDD 11 A1D9H C10 C6 C 0 1 N N N N N N 22.830 36.195 -11.713 1.091 3.161 0.188 CG2 TDD 12 A1D9H C9 C27 C 0 1 N N N N N N 22.014 33.937 -11.059 3.471 3.056 -0.566 CG3 TDD 13 A1D9H C11 C16 C 0 1 N N N N N N 19.319 35.042 -10.458 0.992 0.188 -0.051 C TDD 14 A1D9H O5 O5 O 0 1 N N N N N N 19.107 35.228 -9.261 0.930 -0.744 -0.825 O TDD 15 A1D9H N2 N3 N 0 1 N N N N N N 18.641 34.146 -11.194 -0.088 0.530 0.679 N PHE 16 A1D9H C12 C17 C 0 1 N N S N N N 17.728 33.212 -10.560 -1.358 -0.174 0.483 CA PHE 17 A1D9H C20 C10 C 0 1 N N N N N N 18.473 32.136 -9.774 -2.497 0.720 0.902 C PHE 18 A1D9H O4 O4 O 0 1 N N N N N N 19.307 31.422 -10.325 -2.270 1.834 1.323 O PHE 19 A1D9H C13 C7 C 0 1 N N N N N N 16.800 32.563 -11.591 -1.371 -1.448 1.330 CB PHE 20 A1D9H C14 C18 C 0 1 Y N N N N N 15.850 31.585 -10.950 -0.309 -2.394 0.830 CG PHE 21 A1D9H C15 C8 C 0 1 Y N N N N N 16.114 30.225 -10.959 0.969 -2.336 1.353 CD1 PHE 22 A1D9H C19 C21 C 0 1 Y N N N N N 14.704 32.029 -10.311 -0.616 -3.323 -0.147 CD2 PHE 23 A1D9H C16 C19 C 0 1 Y N N N N N 15.243 29.331 -10.356 1.943 -3.204 0.894 CE1 PHE 24 A1D9H C18 C20 C 0 1 Y N N N N N 13.838 31.134 -9.703 0.358 -4.191 -0.604 CE2 PHE 25 A1D9H C17 C9 C 0 1 Y N N N N N 14.107 29.788 -9.731 1.638 -4.130 -0.086 CZ PHE 26 A1D9H C27 C25 C 0 1 N N N N N N 17.768 29.900 -7.326 -5.093 1.021 2.701 C16 79I 27 A1D9H C25 C24 C 0 1 N N N N N N 22.803 32.962 -6.524 -6.952 -0.864 -2.205 C12 79I 28 A1D9H C24 C13 C 0 1 N N N N N N 20.826 33.431 -5.386 -4.911 0.058 -1.589 C14 79I 29 A1D9H C26 C14 C 0 1 N N N N N N 21.770 31.941 -6.968 -7.256 0.593 -1.791 C11 79I 30 A1D9H C23 C23 C 0 1 N N S N N N 20.448 32.592 -6.592 -5.970 0.978 -1.023 C10 79I 31 A1D9H C21 C11 C 0 1 N N S N N N 18.754 31.013 -7.628 -4.875 1.148 1.216 C8 79I 32 A1D9H C22 C12 C 0 1 N N N N N N 19.284 31.635 -6.336 -6.148 0.732 0.476 C9 79I 33 A1D9H N3 N2 N 0 1 N N N N N N 18.149 32.020 -8.483 -3.767 0.280 0.808 N7 79I 34 A1D9H N4 N4 N 0 1 N N N N N N 22.147 33.579 -5.376 -5.489 -0.961 -2.250 N13 79I 35 A1D9H N5 N5 N 0 1 N N N N N N 18.145 28.711 -7.009 -4.353 0.238 3.392 N17 79I 36 A1D9H O3 O3 O 0 1 N N N N N N 20.030 33.918 -4.564 -3.715 0.217 -1.466 O15 79I 37 A1D9H H4 H4 H 0 1 N N N N N N 17.886 39.000 -13.700 7.739 -1.923 -0.879 H11 BOC 38 A1D9H H5 H3 H 0 1 N N N N N N 17.448 40.733 -13.876 7.928 -0.621 -2.078 H12 BOC 39 A1D9H H6 H5 H 0 1 N N N N N N 17.132 39.880 -12.327 8.991 -0.678 -0.652 H13 BOC 40 A1D9H H7 H8 H 0 1 N N N N N N 20.265 39.537 -14.348 7.272 1.719 -1.496 H21 BOC 41 A1D9H H8 H6 H 0 1 N N N N N N 19.836 41.273 -14.518 6.616 2.083 0.118 H22 BOC 42 A1D9H H9 H7 H 0 1 N N N N N N 21.167 40.781 -13.417 8.335 1.662 -0.070 H23 BOC 43 A1D9H H1 H33 H 0 1 N N N N N N 18.776 42.462 -12.502 6.819 -1.411 1.387 H31 BOC 44 A1D9H H2 H35 H 0 1 N N N N N N 20.128 41.874 -11.476 8.071 -0.165 1.614 H32 BOC 45 A1D9H H3 H34 H 0 1 N N N N N N 18.430 41.498 -11.027 6.352 0.256 1.801 H33 BOC 46 A1D9H H10 H1 H 0 1 N N N N N N 20.250 37.722 -10.155 3.175 -0.404 -1.259 H TDD 47 A1D9H H11 H9 H 0 1 N N N N N N 20.258 35.624 -12.264 2.501 1.100 1.151 HA TDD 48 A1D9H H12 H10 H 0 1 N N N N N N 23.176 35.448 -9.132 0.699 1.625 -2.030 HG11 TDD 49 A1D9H H13 H12 H 0 1 N N N N N N 21.445 35.208 -8.714 1.550 3.116 -2.499 HG12 TDD 50 A1D9H H14 H11 H 0 1 N N N N N N 22.037 36.836 -9.190 2.394 1.550 -2.566 HG13 TDD 51 A1D9H H18 H14 H 0 1 N N N N N N 22.637 35.956 -12.769 0.881 4.078 -0.364 HG21 TDD 52 A1D9H H19 H15 H 0 1 N N N N N N 22.713 37.277 -11.555 0.172 2.586 0.299 HG22 TDD 53 A1D9H H20 H13 H 0 1 N N N N N N 23.855 35.895 -11.450 1.484 3.412 1.173 HG23 TDD 54 A1D9H H15 H36 H 0 1 N N N N N N 23.042 33.646 -10.798 4.207 2.465 -1.110 HG31 TDD 55 A1D9H H16 H38 H 0 1 N N N N N N 21.824 33.703 -12.117 3.363 4.030 -1.043 HG32 TDD 56 A1D9H H17 H37 H 0 1 N N N N N N 21.304 33.382 -10.428 3.803 3.191 0.464 HG33 TDD 57 A1D9H H21 H39 H 0 1 N N N N N N 18.766 34.122 -12.186 -0.024 1.242 1.335 H PHE 58 A1D9H H22 H25 H 0 1 N N N N N N 17.098 33.767 -9.849 -1.469 -0.435 -0.569 HA PHE 59 A1D9H H23 H16 H 0 1 N N N N N N 16.217 33.350 -12.091 -1.171 -1.194 2.371 HB2 PHE 60 A1D9H H24 H17 H 0 1 N N N N N N 17.411 32.031 -12.335 -2.348 -1.925 1.253 HB3 PHE 61 A1D9H H25 H18 H 0 1 N N N N N N 17.008 29.857 -11.441 1.207 -1.613 2.119 HD1 PHE 62 A1D9H H29 H28 H 0 1 N N N N N N 14.483 33.086 -10.286 -1.616 -3.371 -0.552 HD2 PHE 63 A1D9H H26 H26 H 0 1 N N N N N N 15.457 28.273 -10.377 2.942 -3.159 1.302 HE1 PHE 64 A1D9H H28 H27 H 0 1 N N N N N N 12.950 31.496 -9.206 0.118 -4.917 -1.367 HE2 PHE 65 A1D9H H27 H19 H 0 1 N N N N N N 13.428 29.090 -9.263 2.398 -4.807 -0.444 HZ PHE 66 A1D9H H40 H32 H 0 1 N N N N N N 16.711 30.113 -7.379 -5.873 1.591 3.183 H1 79I 67 A1D9H H36 H30 H 0 1 N N N N N N 23.001 33.700 -7.315 -7.354 -1.557 -1.466 H2 79I 68 A1D9H H37 H31 H 0 1 N N N N N N 23.745 32.476 -6.232 -7.376 -1.073 -3.187 H3 79I 69 A1D9H H38 H23 H 0 1 N N N N N N 21.829 31.767 -8.053 -7.392 1.227 -2.667 H4 79I 70 A1D9H H39 H24 H 0 1 N N N N N N 21.905 30.988 -6.436 -8.129 0.640 -1.139 H5 79I 71 A1D9H H34 H29 H 0 1 N N N N N N 20.157 33.272 -7.406 -5.711 2.020 -1.212 H7 79I 72 A1D9H H31 H20 H 0 1 N N N N N N 19.609 30.569 -8.159 -4.634 2.182 0.971 H17 79I 73 A1D9H H32 H21 H 0 1 N N N N N N 18.469 32.191 -5.850 -6.990 1.318 0.844 H18 79I 74 A1D9H H33 H22 H 0 1 N N N N N N 19.627 30.830 -5.670 -6.339 -0.327 0.650 H19 79I 75 A1D9H H30 H2 H 0 1 N N N N N N 17.471 32.644 -8.094 -3.948 -0.612 0.472 H33 79I 76 A1D9H H35 H40 H 0 1 N N N N N N 22.641 34.064 -4.655 -5.001 -1.668 -2.699 H34 79I 77 A1D9H H41 H41 H 0 1 N N N N N N 17.368 28.103 -6.843 -4.493 0.156 4.348 H35 79I 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9H O1 C1 DOUB N N 1 A1D9H C1 O2 SING N N 2 A1D9H O2 C2 SING N N 3 A1D9H C2 C3 SING N N 4 A1D9H C2 C4 SING N N 5 A1D9H C2 C5 SING N N 6 A1D9H C1 N1 SING N N 7 A1D9H N1 C6 SING N N 8 A1D9H C6 C7 SING N N 9 A1D9H C7 C8 SING N N 10 A1D9H C7 C9 SING N N 11 A1D9H C7 C10 SING N N 12 A1D9H C6 C11 SING N N 13 A1D9H C11 N2 SING N N 14 A1D9H N2 C12 SING N N 15 A1D9H C12 C13 SING N N 16 A1D9H C13 C14 SING N N 17 A1D9H C14 C15 DOUB Y N 18 A1D9H C15 C16 SING Y N 19 A1D9H C16 C17 DOUB Y N 20 A1D9H C17 C18 SING Y N 21 A1D9H C18 C19 DOUB Y N 22 A1D9H C12 C20 SING N N 23 A1D9H C20 N3 SING N N 24 A1D9H N3 C21 SING N N 25 A1D9H C21 C22 SING N N 26 A1D9H C22 C23 SING N N 27 A1D9H C23 C24 SING N N 28 A1D9H C24 N4 SING N N 29 A1D9H N4 C25 SING N N 30 A1D9H C25 C26 SING N N 31 A1D9H C24 O3 DOUB N N 32 A1D9H C21 C27 SING N N 33 A1D9H C27 N5 DOUB N N 34 A1D9H C20 O4 DOUB N N 35 A1D9H C11 O5 DOUB N N 36 A1D9H C14 C19 SING Y N 37 A1D9H C23 C26 SING N N 38 A1D9H N1 H10 SING N N 39 A1D9H N3 H30 SING N N 40 A1D9H C4 H5 SING N N 41 A1D9H C4 H4 SING N N 42 A1D9H C4 H6 SING N N 43 A1D9H C5 H8 SING N N 44 A1D9H C5 H9 SING N N 45 A1D9H C5 H7 SING N N 46 A1D9H C6 H11 SING N N 47 A1D9H C8 H12 SING N N 48 A1D9H C8 H14 SING N N 49 A1D9H C8 H13 SING N N 50 A1D9H C10 H20 SING N N 51 A1D9H C10 H18 SING N N 52 A1D9H C10 H19 SING N N 53 A1D9H C13 H23 SING N N 54 A1D9H C13 H24 SING N N 55 A1D9H C15 H25 SING N N 56 A1D9H C17 H27 SING N N 57 A1D9H C21 H31 SING N N 58 A1D9H C22 H32 SING N N 59 A1D9H C22 H33 SING N N 60 A1D9H C26 H38 SING N N 61 A1D9H C26 H39 SING N N 62 A1D9H C12 H22 SING N N 63 A1D9H C16 H26 SING N N 64 A1D9H C18 H28 SING N N 65 A1D9H C19 H29 SING N N 66 A1D9H C23 H34 SING N N 67 A1D9H C25 H36 SING N N 68 A1D9H C25 H37 SING N N 69 A1D9H C27 H40 SING N N 70 A1D9H C3 H1 SING N N 71 A1D9H C3 H3 SING N N 72 A1D9H C3 H2 SING N N 73 A1D9H C9 H15 SING N N 74 A1D9H C9 H17 SING N N 75 A1D9H C9 H16 SING N N 76 A1D9H N2 H21 SING N N 77 A1D9H N4 H35 SING N N 78 A1D9H N5 H41 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9H InChI InChI 1.06 "InChI=1S/C27H41N5O5/c1-26(2,3)21(32-25(36)37-27(4,5)6)24(35)31-20(14-17-10-8-7-9-11-17)23(34)30-19(16-28)15-18-12-13-29-22(18)33/h7-11,16,18-21,28H,12-15H2,1-6H3,(H,29,33)(H,30,34)(H,31,35)(H,32,36)/b28-16+/t18-,19+,20+,21-/m1/s1" A1D9H InChIKey InChI 1.06 YWXGXHNDBCVDDN-NFIWZKORSA-N A1D9H SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C=N)C(C)(C)C" A1D9H SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](C(=O)N[CH](Cc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)C=N)C(C)(C)C" A1D9H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](C(C)(C)C)NC(=O)OC(C)(C)C" A1D9H SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)NC(Cc1ccccc1)C(=O)NC(CC2CCNC2=O)C=N)NC(=O)OC(C)(C)C" # _pdbx_chem_comp_identifier.comp_id A1D9H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9H "Create component" 2024-06-27 PDBC A1D9H "Initial release" 2024-07-31 RCSB #