data_A1D9I
#
_chem_comp.id A1D9I
_chem_comp.name "4-[4-(7-fluoranyl-1H-indol-3-yl)thiophen-2-yl]-4-oxidanylidene-butanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 F N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms SCHEMBL23330381
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-06-27
_chem_comp.pdbx_modified_date 2025-01-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 317.335
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1D9I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9IJN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1D9I N1 N1 N 0 1 Y N N N N N -23.967 21.743 7.890 3.910 1.729 -0.659 N1 A1D9I 1
A1D9I C4 C1 C 0 1 Y N N N N N -24.195 21.509 9.285 4.354 0.565 -0.070 C4 A1D9I 2
A1D9I C5 C2 C 0 1 Y N N N N N -23.198 20.369 9.500 3.240 -0.274 0.094 C5 A1D9I 3
A1D9I C6 C3 C 0 1 Y N N N N N -23.034 19.803 10.723 3.395 -1.535 0.673 C6 A1D9I 4
A1D9I C7 C4 C 0 1 Y N N N N N -23.123 21.007 7.216 2.560 1.663 -0.870 C7 A1D9I 5
A1D9I C8 C5 C 0 1 Y N N N N N -22.713 20.276 8.181 2.089 0.469 -0.440 C8 A1D9I 6
A1D9I C10 C6 C 0 1 Y N N N N N -21.571 17.874 8.409 -0.376 0.761 -0.020 C10 A1D9I 7
A1D9I C13 C7 C 0 1 N N N N N N -20.045 15.773 8.340 -2.833 0.695 0.226 C13 A1D9I 8
A1D9I C15 C8 C 0 1 N N N N N N -20.599 14.304 10.309 -5.295 0.726 0.516 C15 A1D9I 9
A1D9I C1 C9 C 0 1 Y N N N N N -23.766 20.300 11.807 4.632 -1.949 1.078 C1 A1D9I 10
A1D9I C11 C10 C 0 1 Y N N N N N -20.418 17.202 8.055 -1.591 0.146 -0.164 C11 A1D9I 11
A1D9I C12 C11 C 0 1 Y N N N N N -20.316 19.587 7.253 0.322 -1.207 -1.002 C12 A1D9I 12
A1D9I C14 C12 C 0 1 N N N N N N -21.069 14.800 8.951 -4.102 -0.088 0.011 C14 A1D9I 13
A1D9I C16 C13 C 0 1 N N N N N N -20.394 15.466 11.277 -6.565 -0.056 0.302 C16 A1D9I 14
A1D9I C2 C14 C 0 1 Y N N N N N -24.708 21.393 11.637 5.738 -1.125 0.920 C2 A1D9I 15
A1D9I C3 C15 C 0 1 Y N N N N N -24.889 21.973 10.369 5.608 0.125 0.351 C3 A1D9I 16
A1D9I C9 C16 C 0 1 Y N N N N N -21.609 19.217 7.946 0.680 0.003 -0.490 C9 A1D9I 17
A1D9I F1 F1 F 0 1 N N N N N N -25.757 22.967 10.138 6.691 0.918 0.201 F1 A1D9I 18
A1D9I O1 O1 O 0 1 N N N N N N -19.329 15.557 11.929 -7.745 0.465 0.672 O1 A1D9I 19
A1D9I O2 O2 O 0 1 N N N N N N -18.897 15.461 8.213 -2.877 1.797 0.734 O2 A1D9I 20
A1D9I O3 O3 O 0 1 N N N N N N -21.323 16.331 11.447 -6.521 -1.152 -0.204 O3 A1D9I 21
A1D9I S1 S1 S 0 1 Y N N N N N -19.280 18.249 7.142 -1.367 -1.429 -0.909 S1 A1D9I 22
A1D9I H4 H1 H 0 1 N N N N N N -24.460 22.479 7.426 4.471 2.487 -0.888 H4 A1D9I 23
A1D9I H3 H2 H 0 1 N N N N N N -22.348 18.980 10.857 2.539 -2.181 0.799 H3 A1D9I 24
A1D9I H5 H3 H 0 1 N N N N N N -22.855 21.014 6.170 1.961 2.442 -1.318 H5 A1D9I 25
A1D9I H6 H4 H 0 1 N N N N N N -22.367 17.423 8.982 -0.255 1.742 0.414 H6 A1D9I 26
A1D9I H11 H5 H 0 1 N N N N N N -21.355 13.620 10.723 -5.170 0.932 1.580 H11 A1D9I 27
A1D9I H10 H6 H 0 1 N N N N N N -19.647 13.767 10.186 -5.351 1.667 -0.031 H10 A1D9I 28
A1D9I H1 H7 H 0 1 N N N N N N -23.629 19.864 12.786 4.751 -2.924 1.526 H1 A1D9I 29
A1D9I H7 H8 H 0 1 N N N N N N -20.084 20.573 6.878 1.013 -1.928 -1.411 H7 A1D9I 30
A1D9I H8 H9 H 0 1 N N N N N N -22.032 15.318 9.070 -4.227 -0.293 -1.052 H8 A1D9I 31
A1D9I H9 H10 H 0 1 N N N N N N -21.196 13.940 8.277 -4.047 -1.029 0.558 H9 A1D9I 32
A1D9I H2 H11 H 0 1 N N N N N N -25.269 21.760 12.484 6.710 -1.465 1.246 H2 A1D9I 33
A1D9I H12 H12 H 0 1 N N N N N N -19.370 16.315 12.500 -8.532 -0.074 0.514 H12 A1D9I 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1D9I S1 C12 SING Y N 1
A1D9I S1 C11 SING Y N 2
A1D9I C7 N1 SING Y N 3
A1D9I C7 C8 DOUB Y N 4
A1D9I C12 C9 DOUB Y N 5
A1D9I N1 C4 SING Y N 6
A1D9I C9 C8 SING N N 7
A1D9I C9 C10 SING Y N 8
A1D9I C11 C13 SING N N 9
A1D9I C11 C10 DOUB Y N 10
A1D9I C8 C5 SING Y N 11
A1D9I O2 C13 DOUB N N 12
A1D9I C13 C14 SING N N 13
A1D9I C14 C15 SING N N 14
A1D9I C4 C5 DOUB Y N 15
A1D9I C4 C3 SING Y N 16
A1D9I C5 C6 SING Y N 17
A1D9I F1 C3 SING N N 18
A1D9I C15 C16 SING N N 19
A1D9I C3 C2 DOUB Y N 20
A1D9I C6 C1 DOUB Y N 21
A1D9I C16 O3 DOUB N N 22
A1D9I C16 O1 SING N N 23
A1D9I C2 C1 SING Y N 24
A1D9I N1 H4 SING N N 25
A1D9I C6 H3 SING N N 26
A1D9I C7 H5 SING N N 27
A1D9I C10 H6 SING N N 28
A1D9I C15 H11 SING N N 29
A1D9I C15 H10 SING N N 30
A1D9I C1 H1 SING N N 31
A1D9I C12 H7 SING N N 32
A1D9I C14 H8 SING N N 33
A1D9I C14 H9 SING N N 34
A1D9I C2 H2 SING N N 35
A1D9I O1 H12 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1D9I InChI InChI 1.06 "InChI=1S/C16H12FNO3S/c17-12-3-1-2-10-11(7-18-16(10)12)9-6-14(22-8-9)13(19)4-5-15(20)21/h1-3,6-8,18H,4-5H2,(H,20,21)"
A1D9I InChIKey InChI 1.06 RRFCNGVALXBCPS-UHFFFAOYSA-N
A1D9I SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC(=O)c1scc(c1)c2c[nH]c3c(F)cccc23"
A1D9I SMILES CACTVS 3.385 "OC(=O)CCC(=O)c1scc(c1)c2c[nH]c3c(F)cccc23"
A1D9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c[nH]c2c(c1)F)c3cc(sc3)C(=O)CCC(=O)O"
A1D9I SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c[nH]c2c(c1)F)c3cc(sc3)C(=O)CCC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id A1D9I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[4-(7-fluoranyl-1~{H}-indol-3-yl)thiophen-2-yl]-4-oxidanylidene-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1D9I "Create component" 2024-06-27 PDBC
A1D9I "Initial release" 2025-01-08 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id A1D9I
_pdbx_chem_comp_synonyms.name SCHEMBL23330381
_pdbx_chem_comp_synonyms.provenance PUBCHEM
_pdbx_chem_comp_synonyms.type ?
#