data_A1D9L # _chem_comp.id A1D9L _chem_comp.name "4-(2-nitroethyl)-1~{H}-indole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-02 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.199 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VNG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9L C10 C1 C 0 1 N N N N N N -2.487 -4.978 -3.001 1.146 0.361 0.750 C10 A1D9L 1 A1D9L N12 N1 N 1 1 N N N N N N -3.145 -6.744 -4.611 3.335 -0.179 -0.199 N12 A1D9L 2 A1D9L C01 C2 C 0 1 Y N N N N N -0.181 -4.580 -3.968 -0.688 1.989 0.314 C01 A1D9L 3 A1D9L C02 C3 C 0 1 Y N N N N N 1.207 -4.507 -3.847 -2.003 2.299 -0.005 C02 A1D9L 4 A1D9L C03 C4 C 0 1 Y N N N N N 1.812 -4.765 -2.625 -2.924 1.301 -0.237 C03 A1D9L 5 A1D9L C04 C5 C 0 1 Y N N N N N 1.019 -5.096 -1.494 -2.534 -0.032 -0.152 C04 A1D9L 6 A1D9L C05 C6 C 0 1 Y N N N N N -0.348 -5.166 -1.611 -1.200 -0.341 0.171 C05 A1D9L 7 A1D9L C06 C7 C 0 1 Y N N N N N -0.966 -4.906 -2.862 -0.284 0.687 0.403 C06 A1D9L 8 A1D9L C08 C8 C 0 1 Y N N N N N 0.287 -5.636 0.502 -2.336 -2.270 -0.122 C08 A1D9L 9 A1D9L C09 C9 C 0 1 Y N N N N N -0.833 -5.518 -0.316 -1.115 -1.803 0.181 C09 A1D9L 10 A1D9L C11 C10 C 0 1 N N N N N N -3.118 -5.314 -4.356 1.945 0.138 -0.536 C11 A1D9L 11 A1D9L N07 N2 N 0 1 Y N N N N N 1.371 -5.385 -0.213 -3.198 -1.226 -0.324 N07 A1D9L 12 A1D9L O13 O1 O 0 1 N N N N N N -2.186 -7.398 -4.422 3.579 -0.979 0.687 O13 A1D9L 13 A1D9L O14 O2 O -1 1 N N N N N N -4.323 -7.350 -5.084 4.246 0.357 -0.804 O14 A1D9L 14 A1D9L H1 H1 H 0 1 N N N N N N -2.880 -3.995 -2.703 1.582 1.188 1.309 H1 A1D9L 15 A1D9L H2 H2 H 0 1 N N N N N N -2.835 -5.742 -2.291 1.175 -0.544 1.357 H2 A1D9L 16 A1D9L H3 H3 H 0 1 N N N N N N -0.649 -4.383 -4.921 0.022 2.783 0.488 H3 A1D9L 17 A1D9L H4 H4 H 0 1 N N N N N N 1.811 -4.250 -4.705 -2.307 3.333 -0.071 H4 A1D9L 18 A1D9L H5 H5 H 0 1 N N N N N N 2.887 -4.714 -2.534 -3.945 1.552 -0.484 H5 A1D9L 19 A1D9L H6 H6 H 0 1 N N N N N N 0.273 -5.891 1.551 -2.600 -3.314 -0.195 H6 A1D9L 20 A1D9L H7 H7 H 0 1 N N N N N N -1.864 -5.664 -0.028 -0.235 -2.394 0.390 H7 A1D9L 21 A1D9L H8 H8 H 0 1 N N N N N N -2.535 -4.824 -5.149 1.509 -0.689 -1.096 H8 A1D9L 22 A1D9L H9 H9 H 0 1 N N N N N N -4.150 -4.932 -4.370 1.916 1.043 -1.143 H9 A1D9L 23 A1D9L H10 H10 H 0 1 N N N N N N 2.308 -5.405 0.136 -4.136 -1.314 -0.553 H10 A1D9L 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9L O14 N12 SING N N 1 A1D9L N12 O13 DOUB N N 2 A1D9L N12 C11 SING N N 3 A1D9L C11 C10 SING N N 4 A1D9L C01 C02 DOUB Y N 5 A1D9L C01 C06 SING Y N 6 A1D9L C02 C03 SING Y N 7 A1D9L C10 C06 SING N N 8 A1D9L C06 C05 DOUB Y N 9 A1D9L C03 C04 DOUB Y N 10 A1D9L C05 C04 SING Y N 11 A1D9L C05 C09 SING Y N 12 A1D9L C04 N07 SING Y N 13 A1D9L C09 C08 DOUB Y N 14 A1D9L N07 C08 SING Y N 15 A1D9L C10 H1 SING N N 16 A1D9L C10 H2 SING N N 17 A1D9L C01 H3 SING N N 18 A1D9L C02 H4 SING N N 19 A1D9L C03 H5 SING N N 20 A1D9L C08 H6 SING N N 21 A1D9L C09 H7 SING N N 22 A1D9L C11 H8 SING N N 23 A1D9L C11 H9 SING N N 24 A1D9L N07 H10 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9L InChI InChI 1.06 "InChI=1S/C10H10N2O2/c13-12(14)7-5-8-2-1-3-10-9(8)4-6-11-10/h1-4,6,11H,5,7H2" A1D9L InChIKey InChI 1.06 BPLMVBGQIVJWSL-UHFFFAOYSA-N A1D9L SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)CCc1cccc2[nH]ccc12" A1D9L SMILES CACTVS 3.385 "[O-][N+](=O)CCc1cccc2[nH]ccc12" A1D9L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc[nH]c2c1)CC[N+](=O)[O-]" A1D9L SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc[nH]c2c1)CC[N+](=O)[O-]" # _pdbx_chem_comp_identifier.comp_id A1D9L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(2-nitroethyl)-1~{H}-indole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9L "Create component" 2024-07-02 PDBC A1D9L "Modify PCM" 2025-07-07 PDBC A1D9L "Modify coordinates" 2025-07-10 PDBC A1D9L "Modify PCM" 2025-07-10 PDBC A1D9L "Initial release" 2026-04-01 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D9L _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #