data_A1D9R # _chem_comp.id A1D9R _chem_comp.name "(2~{S})-2-[[6-methoxy-2-[(2-methyl-3-phenyl-phenyl)amino]pyrimidin-4-yl]methylamino]-3-oxidanyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-09 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 408.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9INU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9R C10 C1 C 0 1 Y N N N N N 2.242 24.817 6.494 -2.285 1.814 -0.907 C10 A1D9R 1 A1D9R C13 C2 C 0 1 N N N N N N 3.610 23.500 3.211 -2.841 -1.888 -0.338 C13 A1D9R 2 A1D9R C15 C3 C 0 1 Y N N N N N -0.128 23.621 4.790 0.344 0.684 -0.695 C15 A1D9R 3 A1D9R C17 C4 C 0 1 Y N N N N N -2.282 23.025 4.175 1.235 2.563 0.297 C17 A1D9R 4 A1D9R C21 C5 C 0 1 N N N N N N -2.420 26.285 6.022 3.997 0.405 -1.113 C21 A1D9R 5 A1D9R C24 C6 C 0 1 N N N N N N -4.546 26.609 3.671 5.989 -2.409 0.222 C24 A1D9R 6 A1D9R C01 C7 C 0 1 Y N N N N N 8.069 25.377 2.777 -7.555 -2.495 0.833 C01 A1D9R 7 A1D9R C02 C8 C 0 1 Y N N N N N 7.982 24.476 3.824 -7.304 -1.367 1.594 C02 A1D9R 8 A1D9R C03 C9 C 0 1 Y N N N N N 6.808 24.377 4.552 -6.269 -0.519 1.254 C03 A1D9R 9 A1D9R C04 C10 C 0 1 Y N N N N N 5.720 25.175 4.233 -5.477 -0.801 0.143 C04 A1D9R 10 A1D9R C05 C11 C 0 1 Y N N N N N 5.811 26.081 3.187 -5.734 -1.939 -0.619 C05 A1D9R 11 A1D9R C06 C12 C 0 1 Y N N N N N 6.985 26.179 2.457 -6.768 -2.783 -0.267 C06 A1D9R 12 A1D9R C07 C13 C 0 1 Y N N N N N 4.556 25.057 4.978 -4.363 0.107 -0.227 C07 A1D9R 13 A1D9R C08 C14 C 0 1 Y N N N N N 4.442 25.730 6.184 -4.586 1.479 -0.333 C08 A1D9R 14 A1D9R C09 C15 C 0 1 Y N N N N N 3.287 25.613 6.940 -3.550 2.323 -0.678 C09 A1D9R 15 A1D9R C11 C16 C 0 1 Y N N N N N 2.352 24.143 5.286 -2.052 0.448 -0.797 C11 A1D9R 16 A1D9R C12 C17 C 0 1 Y N N N N N 3.510 24.258 4.535 -3.090 -0.407 -0.457 C12 A1D9R 17 A1D9R C18 C18 C 0 1 Y N N N N N -2.746 24.152 4.761 2.513 2.119 -0.041 C18 A1D9R 18 A1D9R C19 C19 C 0 1 Y N N N N N -1.890 25.011 5.363 2.636 0.925 -0.726 C19 A1D9R 19 A1D9R C23 C20 C 0 1 N N S N N N -4.399 27.272 5.041 5.796 -1.067 -0.436 C23 A1D9R 20 A1D9R C25 C21 C 0 1 N N N N N N -3.489 28.497 4.926 6.874 -0.098 0.055 C25 A1D9R 21 A1D9R C30 C22 C 0 1 N N N N N N -2.597 20.960 3.091 -0.273 4.114 1.275 C30 A1D9R 22 A1D9R N14 N1 N 0 1 N N N N N N 1.288 23.289 4.782 -0.772 -0.064 -1.031 N14 A1D9R 23 A1D9R N16 N2 N 0 1 Y N N N N N -0.988 22.766 4.193 0.185 1.826 -0.043 N16 A1D9R 24 A1D9R N20 N3 N 0 1 Y N N N N N -0.595 24.747 5.375 1.546 0.237 -1.030 N20 A1D9R 25 A1D9R N22 N4 N 0 1 N N N N N N -3.875 26.303 5.999 4.469 -0.539 -0.092 N22 A1D9R 26 A1D9R O26 O1 O 0 1 N N N N N N -4.105 29.469 4.127 6.848 -0.041 1.482 O26 A1D9R 27 A1D9R O27 O2 O 0 1 N N N N N N -3.668 26.785 2.788 5.111 -2.877 0.908 O27 A1D9R 28 A1D9R O28 O3 O 0 1 N N N N N N -5.542 25.879 3.426 7.136 -3.084 0.046 O28 A1D9R 29 A1D9R O29 O4 O 0 1 N N N N N N -3.178 22.145 3.556 1.068 3.730 0.965 O29 A1D9R 30 A1D9R H1 H1 H 0 1 N N N N N N 1.344 24.722 7.086 -1.478 2.478 -1.176 H1 A1D9R 31 A1D9R H2 H2 H 0 1 N N N N N N 4.041 22.504 3.390 -3.009 -2.365 -1.303 H2 A1D9R 32 A1D9R H3 H3 H 0 1 N N N N N N 2.606 23.392 2.774 -1.811 -2.059 -0.023 H3 A1D9R 33 A1D9R H4 H4 H 0 1 N N N N N N 4.254 24.059 2.516 -3.522 -2.313 0.400 H4 A1D9R 34 A1D9R H5 H5 H 0 1 N N N N N N -2.074 26.324 7.065 3.932 -0.103 -2.075 H5 A1D9R 35 A1D9R H6 H6 H 0 1 N N N N N N -2.038 27.161 5.476 4.696 1.238 -1.189 H6 A1D9R 36 A1D9R H7 H7 H 0 1 N N N N N N 8.984 25.455 2.208 -8.365 -3.156 1.103 H7 A1D9R 37 A1D9R H8 H8 H 0 1 N N N N N N 8.827 23.852 4.073 -7.919 -1.149 2.454 H8 A1D9R 38 A1D9R H9 H9 H 0 1 N N N N N N 6.740 23.676 5.371 -6.075 0.362 1.848 H9 A1D9R 39 A1D9R H10 H10 H 0 1 N N N N N N 4.968 26.710 2.942 -5.122 -2.162 -1.480 H10 A1D9R 40 A1D9R H11 H11 H 0 1 N N N N N N 7.055 26.880 1.639 -6.968 -3.665 -0.857 H11 A1D9R 41 A1D9R H12 H12 H 0 1 N N N N N N 5.256 26.347 6.535 -5.571 1.882 -0.146 H12 A1D9R 42 A1D9R H13 H13 H 0 1 N N N N N N 3.200 26.142 7.878 -3.727 3.385 -0.768 H13 A1D9R 43 A1D9R H14 H14 H 0 1 N N N N N N -3.804 24.368 4.749 3.386 2.697 0.222 H14 A1D9R 44 A1D9R H15 H15 H 0 1 N N N N N N -5.393 27.609 5.372 5.873 -1.178 -1.518 H15 A1D9R 45 A1D9R H16 H16 H 0 1 N N N N N N -2.533 28.201 4.470 7.852 -0.444 -0.278 H16 A1D9R 46 A1D9R H17 H17 H 0 1 N N N N N N -3.304 28.911 5.928 6.682 0.895 -0.352 H17 A1D9R 47 A1D9R H18 H18 H 0 1 N N N N N N -3.369 20.332 2.622 -0.843 4.221 0.352 H18 A1D9R 48 A1D9R H19 H19 H 0 1 N N N N N N -1.819 21.199 2.351 -0.734 3.350 1.901 H19 A1D9R 49 A1D9R H20 H20 H 0 1 N N N N N N -2.146 20.417 3.935 -0.265 5.065 1.808 H20 A1D9R 50 A1D9R H21 H21 H 0 1 N N N N N N 1.551 22.403 4.400 -0.666 -0.943 -1.427 H21 A1D9R 51 A1D9R H22 H22 H 0 1 N N N N N N -4.209 26.539 6.912 3.806 -1.287 0.043 H22 A1D9R 52 A1D9R H24 H24 H 0 1 N N N N N N -3.538 30.228 4.057 7.507 0.555 1.864 H24 A1D9R 53 A1D9R H25 H25 H 0 1 N N N N N N -5.478 25.542 2.540 7.213 -3.940 0.488 H25 A1D9R 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9R C06 C01 DOUB Y N 1 A1D9R C06 C05 SING Y N 2 A1D9R C01 C02 SING Y N 3 A1D9R O27 C24 DOUB N N 4 A1D9R C30 O29 SING N N 5 A1D9R C05 C04 DOUB Y N 6 A1D9R C13 C12 SING N N 7 A1D9R O28 C24 SING N N 8 A1D9R O29 C17 SING N N 9 A1D9R C24 C23 SING N N 10 A1D9R C02 C03 DOUB Y N 11 A1D9R O26 C25 SING N N 12 A1D9R C17 N16 DOUB Y N 13 A1D9R C17 C18 SING Y N 14 A1D9R N16 C15 SING Y N 15 A1D9R C04 C03 SING Y N 16 A1D9R C04 C07 SING N N 17 A1D9R C12 C07 DOUB Y N 18 A1D9R C12 C11 SING Y N 19 A1D9R C18 C19 DOUB Y N 20 A1D9R N14 C15 SING N N 21 A1D9R N14 C11 SING N N 22 A1D9R C15 N20 DOUB Y N 23 A1D9R C25 C23 SING N N 24 A1D9R C07 C08 SING Y N 25 A1D9R C23 N22 SING N N 26 A1D9R C11 C10 DOUB Y N 27 A1D9R C19 N20 SING Y N 28 A1D9R C19 C21 SING N N 29 A1D9R N22 C21 SING N N 30 A1D9R C08 C09 DOUB Y N 31 A1D9R C10 C09 SING Y N 32 A1D9R C10 H1 SING N N 33 A1D9R C13 H2 SING N N 34 A1D9R C13 H3 SING N N 35 A1D9R C13 H4 SING N N 36 A1D9R C21 H5 SING N N 37 A1D9R C21 H6 SING N N 38 A1D9R C01 H7 SING N N 39 A1D9R C02 H8 SING N N 40 A1D9R C03 H9 SING N N 41 A1D9R C05 H10 SING N N 42 A1D9R C06 H11 SING N N 43 A1D9R C08 H12 SING N N 44 A1D9R C09 H13 SING N N 45 A1D9R C18 H14 SING N N 46 A1D9R C23 H15 SING N N 47 A1D9R C25 H16 SING N N 48 A1D9R C25 H17 SING N N 49 A1D9R C30 H18 SING N N 50 A1D9R C30 H19 SING N N 51 A1D9R C30 H20 SING N N 52 A1D9R N14 H21 SING N N 53 A1D9R N22 H22 SING N N 54 A1D9R O26 H24 SING N N 55 A1D9R O28 H25 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9R InChI InChI 1.06 "InChI=1S/C22H24N4O4/c1-14-17(15-7-4-3-5-8-15)9-6-10-18(14)25-22-24-16(11-20(26-22)30-2)12-23-19(13-27)21(28)29/h3-11,19,23,27H,12-13H2,1-2H3,(H,28,29)(H,24,25,26)/t19-/m0/s1" A1D9R InChIKey InChI 1.06 QSHNMTVUJAVARU-IBGZPJMESA-N A1D9R SMILES_CANONICAL CACTVS 3.385 "COc1cc(CN[C@@H](CO)C(O)=O)nc(Nc2cccc(c2C)c3ccccc3)n1" A1D9R SMILES CACTVS 3.385 "COc1cc(CN[CH](CO)C(O)=O)nc(Nc2cccc(c2C)c3ccccc3)n1" A1D9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1Nc2nc(cc(n2)OC)CN[C@@H](CO)C(=O)O)c3ccccc3" A1D9R SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1Nc2nc(cc(n2)OC)CNC(CO)C(=O)O)c3ccccc3" # _pdbx_chem_comp_identifier.comp_id A1D9R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[6-methoxy-2-[(2-methyl-3-phenyl-phenyl)amino]pyrimidin-4-yl]methylamino]-3-oxidanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9R "Create component" 2024-07-09 PDBC A1D9R "Initial release" 2025-03-12 RCSB #