data_A1D9U # _chem_comp.id A1D9U _chem_comp.name "2-methylpropyl (~{E})-4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]amino]-4-oxidanylidene-but-2-enoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-09 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.348 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9INO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9U C10 C1 C 0 1 N N N N N N 8.561 -8.016 25.528 -2.006 -0.167 0.129 C10 A1D9U 1 A1D9U C11 C2 C 0 1 N N N N N N 8.505 -9.213 24.620 -3.316 0.471 -0.101 C11 A1D9U 2 A1D9U C12 C3 C 0 1 N N N N N N 6.953 -10.522 25.823 -5.687 0.414 -0.376 C12 A1D9U 3 A1D9U C13 C4 C 0 1 N N N N N N 7.770 -11.761 25.990 -6.835 -0.597 -0.395 C13 A1D9U 4 A1D9U C14 C5 C 0 1 N N N N N N 7.227 -12.591 27.130 -6.974 -1.236 0.989 C14 A1D9U 5 A1D9U C15 C6 C 0 1 N N N N N N 7.877 -12.593 24.731 -8.138 0.117 -0.760 C15 A1D9U 6 A1D9U C4 C7 C 0 1 N N R N N N 8.719 -4.159 27.546 2.837 0.062 0.678 C4 A1D9U 7 A1D9U C5 C8 C 0 1 N N N N N N 9.878 -4.082 28.545 3.419 -0.426 -0.664 C5 A1D9U 8 A1D9U C6 C9 C 0 1 N N N N N N 9.048 -1.714 27.650 5.226 0.461 1.200 C6 A1D9U 9 A1D9U C7 C10 C 0 1 N N N N N N 8.821 -2.877 26.697 3.809 1.083 1.295 C7 A1D9U 10 A1D9U C8 C11 C 0 1 N N N N N N 9.626 -5.682 25.807 0.419 -0.057 0.404 C8 A1D9U 11 A1D9U C9 C12 C 0 1 N N N N N N 9.354 -6.877 24.892 -0.893 0.582 0.174 C9 A1D9U 12 A1D9U N2 N1 N 0 1 N N N N N N 8.719 -5.380 26.746 1.536 0.696 0.449 N2 A1D9U 13 A1D9U O2 O1 O 0 1 N N N N N N 11.414 -1.942 28.777 5.711 0.705 -1.409 O2 A1D9U 14 A1D9U O3 O2 O 0 1 N N N N N N 9.440 -2.066 30.213 5.820 -1.554 -0.440 O3 A1D9U 15 A1D9U O4 O3 O 0 1 N N N N N N 10.656 -5.059 25.635 0.490 -1.261 0.553 O4 A1D9U 16 A1D9U O5 O4 O 0 1 N N N N N N 9.397 -9.608 23.933 -3.388 1.674 -0.250 O5 A1D9U 17 A1D9U O6 O5 O 0 1 N N N N N N 7.306 -9.793 24.628 -4.433 -0.281 -0.146 O6 A1D9U 18 A1D9U S2 S1 S 0 1 N N N N N N 10.052 -2.347 28.949 5.232 -0.262 -0.484 S2 A1D9U 19 A1D9U H1 H1 H 0 1 N N N N N N 8.100 -7.968 26.504 -1.943 -1.237 0.266 H1 A1D9U 20 A1D9U H3 H2 H 0 1 N N N N N N 5.891 -10.803 25.766 -5.644 0.933 -1.334 H3 A1D9U 21 A1D9U H2 H3 H 0 1 N N N N N N 7.114 -9.871 26.695 -5.853 1.138 0.422 H2 A1D9U 22 A1D9U H4 H4 H 0 1 N N N N N N 8.789 -11.452 26.266 -6.625 -1.371 -1.133 H4 A1D9U 23 A1D9U H5 H5 H 0 1 N N N N N N 7.835 -13.500 27.244 -7.184 -0.462 1.727 H5 A1D9U 24 A1D9U H6 H6 H 0 1 N N N N N N 7.265 -12.005 28.060 -7.792 -1.957 0.975 H6 A1D9U 25 A1D9U H7 H7 H 0 1 N N N N N N 6.185 -12.871 26.915 -6.046 -1.745 1.249 H7 A1D9U 26 A1D9U H9 H8 H 0 1 N N N N N N 8.490 -13.484 24.931 -8.039 0.572 -1.746 H9 A1D9U 27 A1D9U H10 H9 H 0 1 N N N N N N 6.872 -12.904 24.411 -8.956 -0.604 -0.773 H10 A1D9U 28 A1D9U H8 H10 H 0 1 N N N N N N 8.347 -11.996 23.936 -8.347 0.891 -0.022 H8 A1D9U 29 A1D9U H11 H11 H 0 1 N N N N N N 7.779 -4.110 28.116 2.718 -0.785 1.353 H11 A1D9U 30 A1D9U H12 H12 H 0 1 N N N N N N 9.645 -4.665 29.448 3.148 -1.467 -0.838 H12 A1D9U 31 A1D9U H13 H13 H 0 1 N N N N N N 10.803 -4.465 28.090 3.061 0.201 -1.481 H13 A1D9U 32 A1D9U H15 H14 H 0 1 N N N N N N 9.564 -0.891 27.134 5.993 1.229 1.294 H15 A1D9U 33 A1D9U H14 H15 H 0 1 N N N N N N 8.089 -1.353 28.049 5.359 -0.315 1.954 H14 A1D9U 34 A1D9U H16 H16 H 0 1 N N N N N N 9.664 -2.957 25.995 3.773 2.018 0.735 H16 A1D9U 35 A1D9U H17 H17 H 0 1 N N N N N N 7.889 -2.724 26.134 3.549 1.262 2.338 H17 A1D9U 36 A1D9U H18 H18 H 0 1 N N N N N N 9.698 -6.913 23.869 -0.956 1.652 0.042 H18 A1D9U 37 A1D9U H19 H19 H 0 1 N N N N N N 7.987 -6.041 26.911 1.479 1.657 0.331 H19 A1D9U 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9U C10 C11 SING N N 1 A1D9U C10 C9 DOUB N E 2 A1D9U C11 O6 SING N N 3 A1D9U C11 O5 DOUB N N 4 A1D9U C12 C13 SING N N 5 A1D9U C12 O6 SING N N 6 A1D9U C13 C14 SING N N 7 A1D9U C13 C15 SING N N 8 A1D9U C4 C7 SING N N 9 A1D9U C4 N2 SING N N 10 A1D9U C4 C5 SING N N 11 A1D9U C5 S2 SING N N 12 A1D9U C6 C7 SING N N 13 A1D9U C6 S2 SING N N 14 A1D9U C8 N2 SING N N 15 A1D9U C8 O4 DOUB N N 16 A1D9U C8 C9 SING N N 17 A1D9U O2 S2 DOUB N N 18 A1D9U O3 S2 DOUB N N 19 A1D9U C10 H1 SING N N 20 A1D9U C12 H3 SING N N 21 A1D9U C12 H2 SING N N 22 A1D9U C13 H4 SING N N 23 A1D9U C14 H5 SING N N 24 A1D9U C14 H6 SING N N 25 A1D9U C14 H7 SING N N 26 A1D9U C15 H9 SING N N 27 A1D9U C15 H10 SING N N 28 A1D9U C15 H8 SING N N 29 A1D9U C4 H11 SING N N 30 A1D9U C5 H12 SING N N 31 A1D9U C5 H13 SING N N 32 A1D9U C6 H15 SING N N 33 A1D9U C6 H14 SING N N 34 A1D9U C7 H16 SING N N 35 A1D9U C7 H17 SING N N 36 A1D9U C9 H18 SING N N 37 A1D9U N2 H19 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9U InChI InChI 1.06 "InChI=1S/C12H19NO5S/c1-9(2)7-18-12(15)4-3-11(14)13-10-5-6-19(16,17)8-10/h3-4,9-10H,5-8H2,1-2H3,(H,13,14)/b4-3-" A1D9U InChIKey InChI 1.06 FCRDTNJXBJITIJ-ARJAWSKDSA-N A1D9U SMILES_CANONICAL CACTVS 3.385 "CC(C)COC(=O)\C=C\C(=O)N[C@@H]1CC[S](=O)(=O)C1" A1D9U SMILES CACTVS 3.385 "CC(C)COC(=O)C=CC(=O)N[CH]1CC[S](=O)(=O)C1" A1D9U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)COC(=O)/C=C/C(=O)N[C@@H]1CCS(=O)(=O)C1" A1D9U SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)COC(=O)C=CC(=O)NC1CCS(=O)(=O)C1" # _pdbx_chem_comp_identifier.comp_id A1D9U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-methylpropyl (~{E})-4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]amino]-4-oxidanylidene-but-2-enoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9U "Create component" 2024-07-09 PDBC A1D9U "Modify PCM" 2024-09-27 PDBE A1D9U "Initial release" 2026-01-21 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1D9U _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #