data_A1D9Z # _chem_comp.id A1D9Z _chem_comp.name "(2~{R},3~{R})-4-oxidanyl-3-propyl-2-[(3~{E},6~{S},7~{S},9~{E})-3,7,9-trimethyl-6,11-bis(oxidanyl)-2-oxidanylidene-undeca-3,9-dienyl]-2,3-dihydropyran-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H34 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-17 _chem_comp.pdbx_modified_date 2025-07-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 394.502 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D9Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IQK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D9Z C11 C1 C 0 1 N N R N N N 3.469 -19.421 -14.090 3.978 0.715 -0.362 C11 A1D9Z 1 A1D9Z C12 C2 C 0 1 N N N N N N 4.800 -19.659 -13.371 2.693 0.002 -0.789 C12 A1D9Z 2 A1D9Z C13 C3 C 0 1 N N N N N N 4.934 -18.887 -12.078 1.509 0.893 -0.515 C13 A1D9Z 3 A1D9Z C15 C4 C 0 1 N N N N N N 5.912 -19.291 -11.052 0.159 0.435 -0.839 C15 A1D9Z 4 A1D9Z C16 C5 C 0 1 N N N N N N 6.475 -20.528 -11.058 -0.890 1.224 -0.596 C16 A1D9Z 5 A1D9Z C17 C6 C 0 1 N N N N N N 7.491 -20.983 -10.028 -2.271 0.791 -1.014 C17 A1D9Z 6 A1D9Z C18 C7 C 0 1 N N N N N N 6.254 -18.273 -9.998 -0.049 -0.929 -1.446 C18 A1D9Z 7 A1D9Z C19 C8 C 0 1 N N S N N N 7.205 -22.395 -9.516 -3.210 0.842 0.193 C19 A1D9Z 8 A1D9Z C2 C9 C 0 1 N N N N N N 4.321 -17.889 -15.742 3.998 -0.222 1.808 C2 A1D9Z 9 A1D9Z C20 C10 C 0 1 N N S N N N 5.878 -22.501 -8.758 -4.637 0.524 -0.256 C20 A1D9Z 10 A1D9Z C22 C11 C 0 1 N N N N N N 5.668 -23.913 -8.217 -4.703 -0.919 -0.759 C22 A1D9Z 11 A1D9Z C23 C12 C 0 1 N N N N N N 5.850 -21.455 -7.651 -5.594 0.697 0.925 C23 A1D9Z 12 A1D9Z C24 C13 C 0 1 N N N N N N 4.873 -21.768 -6.543 -7.013 0.503 0.455 C24 A1D9Z 13 A1D9Z C25 C14 C 0 1 N N N N N N 3.411 -21.484 -6.748 -7.772 1.659 -0.143 C25 A1D9Z 14 A1D9Z C26 C15 C 0 1 N N N N N N 5.360 -22.269 -5.394 -7.585 -0.670 0.566 C26 A1D9Z 15 A1D9Z C27 C16 C 0 1 N N N N N N 4.486 -22.603 -4.210 -9.004 -0.863 0.096 C27 A1D9Z 16 A1D9Z C3 C17 C 0 1 N N N N N N 4.839 -19.035 -16.515 4.605 -1.397 1.305 C3 A1D9Z 17 A1D9Z C4 C18 C 0 1 N N N N N N 4.315 -20.265 -16.284 5.185 -1.399 0.083 C4 A1D9Z 18 A1D9Z C5 C19 C 0 1 N N R N N N 3.319 -20.490 -15.178 5.192 -0.138 -0.745 C5 A1D9Z 19 A1D9Z C6 C20 C 0 1 N N N N N N 1.897 -20.579 -15.727 6.477 0.647 -0.473 C6 A1D9Z 20 A1D9Z C7 C21 C 0 1 N N N N N N 1.077 -21.601 -14.943 7.681 -0.162 -0.959 C7 A1D9Z 21 A1D9Z C8 C22 C 0 1 N N N N N N 1.367 -23.016 -15.403 8.966 0.623 -0.686 C8 A1D9Z 22 A1D9Z O1 O1 O 0 1 N N N N N N 3.384 -18.113 -14.660 3.975 0.901 1.058 O1 A1D9Z 23 A1D9Z O10 O2 O 0 1 N N N N N N 4.679 -21.312 -17.020 5.756 -2.524 -0.391 O10 A1D9Z 24 A1D9Z O14 O3 O 0 1 N N N N N N 4.251 -17.883 -11.900 1.676 1.991 -0.026 O14 A1D9Z 25 A1D9Z O21 O4 O 0 1 N N N N N N 7.213 -23.304 -10.625 -2.790 -0.119 1.163 O21 A1D9Z 26 A1D9Z O28 O5 O 0 1 N N N N N N 5.230 -22.342 -3.014 -9.096 -2.077 -0.654 O28 A1D9Z 27 A1D9Z O9 O6 O 0 1 N N N N N N 4.613 -16.743 -16.005 3.497 -0.223 2.917 O9 A1D9Z 28 A1D9Z H11 H1 H 0 1 N N N N N N 2.656 -19.558 -13.361 4.041 1.684 -0.858 H11 A1D9Z 29 A1D9Z H122 H2 H 0 0 N N N N N N 4.887 -20.732 -13.146 2.740 -0.223 -1.855 H122 A1D9Z 30 A1D9Z H121 H3 H 0 0 N N N N N N 5.617 -19.358 -14.043 2.588 -0.925 -0.226 H121 A1D9Z 31 A1D9Z H16 H4 H 0 1 N N N N N N 6.185 -21.221 -11.834 -0.748 2.172 -0.099 H16 A1D9Z 32 A1D9Z H171 H5 H 0 0 N N N N N N 8.491 -20.969 -10.487 -2.642 1.460 -1.791 H171 A1D9Z 33 A1D9Z H172 H6 H 0 0 N N N N N N 7.468 -20.287 -9.177 -2.232 -0.227 -1.401 H172 A1D9Z 34 A1D9Z H182 H7 H 0 0 N N N N N N 6.989 -18.700 -9.300 -0.278 -1.646 -0.658 H182 A1D9Z 35 A1D9Z H183 H8 H 0 0 N N N N N N 6.679 -17.378 -10.477 -0.877 -0.889 -2.153 H183 A1D9Z 36 A1D9Z H181 H9 H 0 0 N N N N N N 5.343 -17.996 -9.447 0.858 -1.237 -1.965 H181 A1D9Z 37 A1D9Z H19 H10 H 0 1 N N N N N N 8.012 -22.670 -8.821 -3.181 1.839 0.633 H19 A1D9Z 38 A1D9Z H20 H11 H 0 1 N N N N N N 5.063 -22.278 -9.462 -4.925 1.202 -1.059 H20 A1D9Z 39 A1D9Z H222 H12 H 0 0 N N N N N N 4.710 -23.961 -7.678 -5.720 -1.146 -1.079 H222 A1D9Z 40 A1D9Z H223 H13 H 0 0 N N N N N N 5.655 -24.628 -9.053 -4.022 -1.043 -1.601 H223 A1D9Z 41 A1D9Z H221 H14 H 0 0 N N N N N N 6.488 -24.168 -7.530 -4.415 -1.598 0.044 H221 A1D9Z 42 A1D9Z H231 H15 H 0 0 N N N N N N 6.858 -21.384 -7.215 -5.362 -0.042 1.692 H231 A1D9Z 43 A1D9Z H232 H16 H 0 0 N N N N N N 5.573 -20.487 -8.095 -5.482 1.699 1.340 H232 A1D9Z 44 A1D9Z H253 H17 H 0 0 N N N N N N 2.851 -21.771 -5.846 -7.611 1.681 -1.221 H253 A1D9Z 45 A1D9Z H251 H18 H 0 0 N N N N N N 3.270 -20.410 -6.941 -8.836 1.540 0.062 H251 A1D9Z 46 A1D9Z H252 H19 H 0 0 N N N N N N 3.042 -22.062 -7.608 -7.419 2.592 0.296 H252 A1D9Z 47 A1D9Z H26 H20 H 0 1 N N N N N N 6.423 -22.440 -5.315 -7.041 -1.498 0.995 H26 A1D9Z 48 A1D9Z H272 H21 H 0 0 N N N N N N 3.580 -21.979 -4.228 -9.668 -0.917 0.958 H272 A1D9Z 49 A1D9Z H271 H22 H 0 0 N N N N N N 4.200 -23.665 -4.246 -9.295 -0.024 -0.536 H271 A1D9Z 50 A1D9Z H3 H23 H 0 1 N N N N N N 5.619 -18.897 -17.249 4.604 -2.299 1.900 H3 A1D9Z 51 A1D9Z H5 H24 H 0 1 N N N N N N 3.552 -21.460 -14.715 5.138 -0.396 -1.803 H5 A1D9Z 52 A1D9Z H61 H25 H 0 1 N N N N N N 1.417 -19.593 -15.646 6.440 1.598 -1.003 H61 A1D9Z 53 A1D9Z H62 H26 H 0 1 N N N N N N 1.937 -20.882 -16.784 6.570 0.830 0.598 H62 A1D9Z 54 A1D9Z H71 H27 H 0 1 N N N N N N 1.325 -21.514 -13.875 7.718 -1.114 -0.429 H71 A1D9Z 55 A1D9Z H72 H28 H 0 1 N N N N N N 0.008 -21.390 -15.090 7.588 -0.346 -2.029 H72 A1D9Z 56 A1D9Z H82 H29 H 0 1 N N N N N N 0.761 -23.724 -14.818 9.824 0.047 -1.032 H82 A1D9Z 57 A1D9Z H83 H30 H 0 1 N N N N N N 1.117 -23.113 -16.470 8.930 1.575 -1.216 H83 A1D9Z 58 A1D9Z H81 H31 H 0 1 N N N N N N 2.434 -23.238 -15.255 9.059 0.807 0.384 H81 A1D9Z 59 A1D9Z HO10 H32 H 0 0 N N N N N N 4.216 -22.086 -16.721 5.726 -3.305 0.179 HO10 A1D9Z 60 A1D9Z HO21 H33 H 0 0 N N N N N N 7.036 -24.184 -10.315 -2.791 -1.031 0.840 HO21 A1D9Z 61 A1D9Z HO28 H34 H 0 0 N N N N N N 4.695 -22.547 -2.256 -9.983 -2.266 -0.988 HO28 A1D9Z 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9Z O1 C2 SING N N 1 A1D9Z C2 C3 SING N N 2 A1D9Z C3 C4 DOUB N N 3 A1D9Z C4 C5 SING N N 4 A1D9Z C6 C5 SING N N 5 A1D9Z C7 C6 SING N N 6 A1D9Z C8 C7 SING N N 7 A1D9Z O9 C2 DOUB N N 8 A1D9Z O10 C4 SING N N 9 A1D9Z O1 C11 SING N N 10 A1D9Z C5 C11 SING N N 11 A1D9Z C11 C12 SING N N 12 A1D9Z C12 C13 SING N N 13 A1D9Z C13 O14 DOUB N N 14 A1D9Z C15 C13 SING N N 15 A1D9Z C16 C15 DOUB N E 16 A1D9Z C17 C16 SING N N 17 A1D9Z C18 C15 SING N N 18 A1D9Z C19 C17 SING N N 19 A1D9Z C20 C19 SING N N 20 A1D9Z O21 C19 SING N N 21 A1D9Z C22 C20 SING N N 22 A1D9Z C23 C20 SING N N 23 A1D9Z C24 C23 SING N N 24 A1D9Z C25 C24 SING N N 25 A1D9Z C26 C24 DOUB N E 26 A1D9Z C27 C26 SING N N 27 A1D9Z O28 C27 SING N N 28 A1D9Z C11 H11 SING N N 29 A1D9Z C12 H122 SING N N 30 A1D9Z C12 H121 SING N N 31 A1D9Z C16 H16 SING N N 32 A1D9Z C17 H171 SING N N 33 A1D9Z C17 H172 SING N N 34 A1D9Z C18 H182 SING N N 35 A1D9Z C18 H183 SING N N 36 A1D9Z C18 H181 SING N N 37 A1D9Z C19 H19 SING N N 38 A1D9Z C20 H20 SING N N 39 A1D9Z C22 H222 SING N N 40 A1D9Z C22 H223 SING N N 41 A1D9Z C22 H221 SING N N 42 A1D9Z C23 H231 SING N N 43 A1D9Z C23 H232 SING N N 44 A1D9Z C25 H253 SING N N 45 A1D9Z C25 H251 SING N N 46 A1D9Z C25 H252 SING N N 47 A1D9Z C26 H26 SING N N 48 A1D9Z C27 H272 SING N N 49 A1D9Z C27 H271 SING N N 50 A1D9Z C3 H3 SING N N 51 A1D9Z C5 H5 SING N N 52 A1D9Z C6 H61 SING N N 53 A1D9Z C6 H62 SING N N 54 A1D9Z C7 H71 SING N N 55 A1D9Z C7 H72 SING N N 56 A1D9Z C8 H82 SING N N 57 A1D9Z C8 H83 SING N N 58 A1D9Z C8 H81 SING N N 59 A1D9Z O10 HO10 SING N N 60 A1D9Z O21 HO21 SING N N 61 A1D9Z O28 HO28 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D9Z InChI InChI 1.06 "InChI=1S/C22H34O6/c1-5-6-17-20(26)13-22(27)28-21(17)12-19(25)15(3)7-8-18(24)16(4)11-14(2)9-10-23/h7,9,13,16-18,21,23-24,26H,5-6,8,10-12H2,1-4H3/b14-9+,15-7+/t16-,17-,18-,21+/m0/s1" A1D9Z InChIKey InChI 1.06 UCBTXUVTSVSRBB-MHZDCPSDSA-N A1D9Z SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H]1[C@@H](CC(=O)/C(C)=C/C[C@H](O)[C@@H](C)C/C(C)=C/CO)OC(=O)C=C1O" A1D9Z SMILES CACTVS 3.385 "CCC[CH]1[CH](CC(=O)C(C)=CC[CH](O)[CH](C)CC(C)=CCO)OC(=O)C=C1O" A1D9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]1[C@H](OC(=O)C=C1O)CC(=O)/C(=C/C[C@@H]([C@@H](C)C/C(=C/CO)/C)O)/C" A1D9Z SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1C(OC(=O)C=C1O)CC(=O)C(=CCC(C(C)CC(=CCO)C)O)C" # _pdbx_chem_comp_identifier.comp_id A1D9Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R})-4-oxidanyl-3-propyl-2-[(3~{E},6~{S},7~{S},9~{E})-3,7,9-trimethyl-6,11-bis(oxidanyl)-2-oxidanylidene-undeca-3,9-dienyl]-2,3-dihydropyran-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D9Z "Create component" 2024-07-17 PDBC A1D9Z "Initial release" 2025-07-16 RCSB #