data_A1DA8 # _chem_comp.id A1DA8 _chem_comp.name "N-(trifluoroacetyl)-D-phenylalanyl-3-cyclopropyl-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-23 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DA8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12AF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DA8 N1 N1 N 0 1 N N N N N N 8.692 -7.167 22.264 3.168 0.863 0.904 N1 A1DA8 1 A1DA8 C4 C1 C 0 1 N N N N N N 11.090 -7.350 22.862 3.102 -1.334 -0.169 C4 A1DA8 2 A1DA8 C5 C2 C 0 1 Y N N N N N 11.163 -6.156 23.788 4.308 -1.825 0.590 C5 A1DA8 3 A1DA8 C8 C3 C 0 1 N N S N N N 10.325 -11.699 22.208 -1.247 -0.344 -0.660 C8 A1DA8 4 A1DA8 C10 C4 C 0 1 N N N N N N 11.058 -12.638 23.224 -1.171 -0.775 -2.126 C10 A1DA8 5 A1DA8 N12 N2 N 0 1 N N N N N N 8.672 -12.761 20.716 -3.669 -0.806 -0.465 N12 A1DA8 6 A1DA8 C15 C5 C 0 1 N N N N N N 7.309 -14.769 19.968 -5.015 -2.825 -0.428 C15 A1DA8 7 A1DA8 C17 C6 C 0 1 N N S N N N 6.453 -11.009 19.527 -5.911 0.725 0.688 C17 A1DA8 8 A1DA8 C21 C7 C 0 1 N N N N N N 5.964 -10.270 18.295 -7.146 1.578 0.496 C21 A1DA8 9 A1DA8 C24 C8 C 0 1 N N N N N N 6.560 -6.009 22.070 4.451 2.808 0.073 C24 A1DA8 10 A1DA8 C26 C9 C 0 1 Y N N N N N 11.582 -6.304 25.105 4.207 -2.939 1.401 C26 A1DA8 11 A1DA8 C28 C10 C 0 1 Y N N N N N 11.315 -3.946 25.483 6.520 -2.726 1.982 C28 A1DA8 12 A1DA8 C11 C11 C 0 1 N N N N N N 12.544 -12.344 23.361 -0.056 0.002 -2.828 C11 A1DA8 13 A1DA8 C14 C12 C 0 1 N N S N N N 7.359 -13.269 20.315 -4.812 -1.460 0.178 C14 A1DA8 14 A1DA8 C16 C13 C 0 1 N N N N N N 6.854 -12.442 19.131 -6.069 -0.615 -0.035 C16 A1DA8 15 A1DA8 C18 C14 C 0 1 N N N N N N 5.285 -10.918 20.521 -5.833 0.509 2.217 C18 A1DA8 16 A1DA8 C19 C15 C 0 1 N N N N N N 4.444 -9.721 20.023 -6.602 1.740 2.748 C19 A1DA8 17 A1DA8 C2 C16 C 0 1 N N R N N N 9.746 -8.013 22.818 2.336 -0.323 0.688 C2 A1DA8 18 A1DA8 C23 C17 C 0 1 N N N N N N 7.506 -6.943 22.845 3.595 1.587 -0.149 C23 A1DA8 19 A1DA8 C27 C18 C 0 1 Y N N N N N 11.665 -5.203 25.948 5.313 -3.389 2.098 C27 A1DA8 20 A1DA8 C29 C19 C 0 1 Y N N N N N 10.892 -3.791 24.178 6.622 -1.615 1.166 C29 A1DA8 21 A1DA8 C3 C20 C 0 1 N N N N N N 9.678 -9.362 22.108 1.067 0.075 -0.019 C3 A1DA8 22 A1DA8 C30 C21 C 0 1 Y N N N N N 10.813 -4.893 23.341 5.516 -1.164 0.469 C30 A1DA8 23 A1DA8 C34 C22 C 0 1 N N N N N N 13.450 -12.610 22.192 0.105 -0.201 -4.336 C34 A1DA8 24 A1DA8 C35 C23 C 0 1 N N N N N N 13.588 -13.429 23.431 1.130 -0.799 -3.371 C35 A1DA8 25 A1DA8 C9 C24 C 0 1 N N N N N N 8.873 -12.190 21.927 -2.422 -1.017 0.002 C9 A1DA8 26 A1DA8 F31 F1 F 0 1 N N N N N N 7.187 -5.228 21.206 4.766 3.388 -1.161 F31 A1DA8 27 A1DA8 F32 F2 F 0 1 N N N N N N 5.680 -6.714 21.396 3.751 3.732 0.857 F32 A1DA8 28 A1DA8 F33 F3 F 0 1 N N N N N N 5.919 -5.241 22.913 5.630 2.438 0.729 F33 A1DA8 29 A1DA8 N20 N3 N 0 1 N N N N N N 4.850 -9.587 18.640 -7.513 2.129 1.665 N20 A1DA8 30 A1DA8 N41 N4 N 0 1 N N N N N N 6.206 -15.351 19.882 -4.238 -3.234 -1.358 N41 A1DA8 31 A1DA8 N6 N5 N 0 1 N N N N N N 10.321 -10.358 22.732 -0.012 -0.731 0.028 N6 A1DA8 32 A1DA8 O13 O1 O 0 1 N N N N N N 7.978 -12.074 22.740 -2.246 -1.748 0.953 O13 A1DA8 33 A1DA8 O22 O2 O 0 1 N N N N N N 6.484 -10.314 17.224 -7.720 1.742 -0.560 O22 A1DA8 34 A1DA8 O25 O3 O 0 1 N N N N N N 7.132 -7.398 23.889 3.291 1.257 -1.276 O25 A1DA8 35 A1DA8 O7 O4 O 0 1 N N N N N N 9.071 -9.513 21.105 1.015 1.122 -0.630 O7 A1DA8 36 A1DA8 H44 H1 H 0 1 N N N N N N 8.869 -6.722 21.386 3.408 1.130 1.805 H44 A1DA8 37 A1DA8 H46 H2 H 0 1 N N N N N N 11.830 -8.092 23.197 3.425 -0.855 -1.094 H46 A1DA8 38 A1DA8 H47 H3 H 0 1 N N N N N N 11.342 -7.014 21.845 2.452 -2.177 -0.404 H47 A1DA8 39 A1DA8 H49 H4 H 0 1 N N N N N N 10.883 -11.723 21.260 -1.369 0.738 -0.604 H49 A1DA8 40 A1DA8 H50 H5 H 0 1 N N N N N N 10.587 -12.518 24.211 -0.960 -1.843 -2.180 H50 A1DA8 41 A1DA8 H51 H6 H 0 1 N N N N N N 10.939 -13.678 22.885 -2.122 -0.567 -2.615 H51 A1DA8 42 A1DA8 H53 H7 H 0 1 N N N N N N 9.440 -12.838 20.080 -3.810 -0.221 -1.225 H53 A1DA8 43 A1DA8 H1 H8 H 0 1 N N N N N N 8.225 -15.316 19.799 -5.817 -3.457 -0.077 H1 A1DA8 44 A1DA8 H57 H9 H 0 1 N N N N N N 7.328 -10.490 19.945 -5.025 1.250 0.331 H57 A1DA8 45 A1DA8 H63 H10 H 0 1 N N N N N N 11.845 -7.283 25.476 3.264 -3.457 1.492 H63 A1DA8 46 A1DA8 H65 H11 H 0 1 N N N N N N 11.373 -3.090 26.139 7.384 -3.078 2.525 H65 A1DA8 47 A1DA8 H52 H12 H 0 1 N N N N N N 12.781 -11.436 23.935 0.148 0.996 -2.430 H52 A1DA8 48 A1DA8 H54 H13 H 0 1 N N N N N N 6.661 -13.106 21.149 -4.619 -1.562 1.246 H54 A1DA8 49 A1DA8 H55 H14 H 0 1 N N N N N N 7.652 -12.387 18.376 -6.934 -1.144 0.365 H55 A1DA8 50 A1DA8 H56 H15 H 0 1 N N N N N N 5.976 -12.946 18.700 -6.212 -0.438 -1.101 H56 A1DA8 51 A1DA8 H59 H16 H 0 1 N N N N N N 4.690 -11.843 20.507 -6.331 -0.416 2.506 H59 A1DA8 52 A1DA8 H58 H17 H 0 1 N N N N N N 5.656 -10.735 21.540 -4.799 0.518 2.560 H58 A1DA8 53 A1DA8 H61 H18 H 0 1 N N N N N N 3.368 -9.935 20.100 -7.169 1.474 3.640 H61 A1DA8 54 A1DA8 H60 H19 H 0 1 N N N N N N 4.678 -8.810 20.593 -5.909 2.551 2.968 H60 A1DA8 55 A1DA8 H45 H20 H 0 1 N N N N N N 9.470 -8.211 23.864 2.091 -0.775 1.649 H45 A1DA8 56 A1DA8 H64 H21 H 0 1 N N N N N N 12.003 -5.327 26.966 5.234 -4.260 2.732 H64 A1DA8 57 A1DA8 H66 H22 H 0 1 N N N N N N 10.623 -2.812 23.810 7.566 -1.098 1.072 H66 A1DA8 58 A1DA8 H67 H23 H 0 1 N N N N N N 10.473 -4.765 22.324 5.596 -0.296 -0.169 H67 A1DA8 59 A1DA8 H68 H24 H 0 1 N N N N N N 13.045 -13.065 21.276 -0.584 -0.888 -4.828 H68 A1DA8 60 A1DA8 H69 H25 H 0 1 N N N N N N 14.230 -11.882 21.926 0.414 0.659 -4.930 H69 A1DA8 61 A1DA8 H71 H26 H 0 1 N N N N N N 14.469 -13.303 24.078 2.114 -0.332 -3.329 H71 A1DA8 62 A1DA8 H70 H27 H 0 1 N N N N N N 13.283 -14.486 23.428 1.115 -1.879 -3.227 H70 A1DA8 63 A1DA8 H62 H28 H 0 1 N N N N N N 4.341 -9.028 17.985 -8.282 2.710 1.779 H62 A1DA8 64 A1DA8 H4 H29 H 0 1 N N N N N N 6.310 -16.319 19.652 -4.369 -4.113 -1.748 H4 A1DA8 65 A1DA8 H48 H30 H 0 1 N N N N N N 10.810 -10.165 23.583 0.029 -1.568 0.516 H48 A1DA8 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DA8 N1 C2 SING N N 1 A1DA8 N1 C23 SING N N 2 A1DA8 C2 C3 SING N N 3 A1DA8 C2 C4 SING N N 4 A1DA8 C3 N6 SING N N 5 A1DA8 C3 O7 DOUB N N 6 A1DA8 C4 C5 SING N N 7 A1DA8 C5 C26 DOUB Y N 8 A1DA8 C5 C30 SING Y N 9 A1DA8 N6 C8 SING N N 10 A1DA8 C8 C9 SING N N 11 A1DA8 C8 C10 SING N N 12 A1DA8 C9 N12 SING N N 13 A1DA8 C9 O13 DOUB N N 14 A1DA8 C10 C11 SING N N 15 A1DA8 C11 C34 SING N N 16 A1DA8 C11 C35 SING N N 17 A1DA8 N12 C14 SING N N 18 A1DA8 C14 C15 SING N N 19 A1DA8 C14 C16 SING N N 20 A1DA8 C15 N41 DOUB N N 21 A1DA8 C16 C17 SING N N 22 A1DA8 C17 C18 SING N N 23 A1DA8 C17 C21 SING N N 24 A1DA8 C18 C19 SING N N 25 A1DA8 C19 N20 SING N N 26 A1DA8 N20 C21 SING N N 27 A1DA8 C21 O22 DOUB N N 28 A1DA8 C23 C24 SING N N 29 A1DA8 C23 O25 DOUB N N 30 A1DA8 C24 F31 SING N N 31 A1DA8 C24 F32 SING N N 32 A1DA8 C24 F33 SING N N 33 A1DA8 C26 C27 SING Y N 34 A1DA8 C27 C28 DOUB Y N 35 A1DA8 C28 C29 SING Y N 36 A1DA8 C29 C30 DOUB Y N 37 A1DA8 C34 C35 SING N N 38 A1DA8 N1 H44 SING N N 39 A1DA8 C4 H46 SING N N 40 A1DA8 C4 H47 SING N N 41 A1DA8 C8 H49 SING N N 42 A1DA8 C10 H50 SING N N 43 A1DA8 C10 H51 SING N N 44 A1DA8 N12 H53 SING N N 45 A1DA8 C15 H1 SING N N 46 A1DA8 C17 H57 SING N N 47 A1DA8 C26 H63 SING N N 48 A1DA8 C28 H65 SING N N 49 A1DA8 C11 H52 SING N N 50 A1DA8 C14 H54 SING N N 51 A1DA8 C16 H55 SING N N 52 A1DA8 C16 H56 SING N N 53 A1DA8 C18 H59 SING N N 54 A1DA8 C18 H58 SING N N 55 A1DA8 C19 H61 SING N N 56 A1DA8 C19 H60 SING N N 57 A1DA8 C2 H45 SING N N 58 A1DA8 C27 H64 SING N N 59 A1DA8 C29 H66 SING N N 60 A1DA8 C30 H67 SING N N 61 A1DA8 C34 H68 SING N N 62 A1DA8 C34 H69 SING N N 63 A1DA8 C35 H71 SING N N 64 A1DA8 C35 H70 SING N N 65 A1DA8 N20 H62 SING N N 66 A1DA8 N41 H4 SING N N 67 A1DA8 N6 H48 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DA8 SMILES ACDLabs 14.52 "FC(F)(F)C(=O)NC(Cc1ccccc1)C(=O)NC(CC1CC1)C(=O)NC(CC1CCNC1=O)C=N" A1DA8 InChI InChI 1.06 "InChI=1S/C24H30F3N5O4/c25-24(26,27)23(36)32-19(10-14-4-2-1-3-5-14)22(35)31-18(11-15-6-7-15)21(34)30-17(13-28)12-16-8-9-29-20(16)33/h1-5,13,15-19,28H,6-12H2,(H,29,33)(H,30,34)(H,31,35)(H,32,36)/b28-13-/t16-,17-,18-,19+/m0/s1" A1DA8 InChIKey InChI 1.06 SOTCWAUHFDNUSU-UMKFLYQKSA-N A1DA8 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)C(=O)N[C@H](Cc1ccccc1)C(=O)N[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N" A1DA8 SMILES CACTVS 3.385 "FC(F)(F)C(=O)N[CH](Cc1ccccc1)C(=O)N[CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)C=N" A1DA8 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C\[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)[C@@H](Cc3ccccc3)NC(=O)C(F)(F)F" A1DA8 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CC(C(=O)NC(CC2CC2)C(=O)NC(CC3CCNC3=O)C=N)NC(=O)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DA8 "SYSTEMATIC NAME" ACDLabs 14.52 "N-(trifluoroacetyl)-D-phenylalanyl-3-cyclopropyl-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" A1DA8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-3-phenyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DA8 "Create component" 2026-03-23 RCSB A1DA8 "Modify PCM" 2026-03-23 RCSB A1DA8 "Initial release" 2026-04-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DA8 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #