data_A1DA9 # _chem_comp.id A1DA9 _chem_comp.name "(4M)-N-[4-hydroxy-3-(pyrrolidine-1-carbonyl)phenyl]-4-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1-benzothiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H22 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-23 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DA9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11ZL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DA9 C10 C1 C 0 1 Y N N N N N -2.281 34.954 -34.573 -2.633 -0.668 0.539 C10 A1DA9 1 A1DA9 C13 C2 C 0 1 Y N N N N N -1.090 32.204 -32.196 0.770 0.848 0.359 C13 A1DA9 2 A1DA9 C15 C3 C 0 1 Y N N N N N -1.733 30.136 -31.190 2.941 1.638 0.177 C15 A1DA9 3 A1DA9 C17 C4 C 0 1 Y N N N N N -3.840 28.684 -31.661 5.106 0.360 0.060 C17 A1DA9 4 A1DA9 C20 C5 C 0 1 Y N N N N N -6.056 26.068 -33.476 7.766 -1.737 -1.716 C20 A1DA9 5 A1DA9 C21 C6 C 0 1 Y N N N N N -7.312 26.517 -33.943 8.017 -2.944 -1.184 C21 A1DA9 6 A1DA9 C26 C7 C 0 1 Y N N N N N -1.995 28.074 -30.019 5.049 2.838 -0.012 C26 A1DA9 7 A1DA9 C28 C8 C 0 1 Y N N N N N 0.017 29.419 -29.630 2.992 4.060 0.099 C28 A1DA9 8 A1DA9 C02 C9 C 0 1 N N N N N N -0.539 35.773 -37.769 -6.146 -1.001 -0.754 C02 A1DA9 9 A1DA9 C04 C10 C 0 1 N N N N N N -0.300 35.649 -40.310 -7.979 0.656 -1.181 C04 A1DA9 10 A1DA9 C05 C11 C 0 1 N N N N N N -1.320 35.764 -41.490 -8.160 2.146 -0.823 C05 A1DA9 11 A1DA9 C06 C12 C 0 1 N N N N N N -2.669 35.412 -40.854 -7.187 2.336 0.371 C06 A1DA9 12 A1DA9 C07 C13 C 0 1 N N N N N N -2.451 36.008 -39.436 -6.020 1.399 -0.026 C07 A1DA9 13 A1DA9 C08 C14 C 0 1 Y N N N N N -1.321 35.912 -36.642 -4.864 -1.312 -0.093 C08 A1DA9 14 A1DA9 C09 C15 C 0 1 Y N N N N N -1.408 34.882 -35.686 -3.831 -0.371 -0.087 C09 A1DA9 15 A1DA9 C12 C16 C 0 1 N N N N N N -1.065 33.355 -33.039 -0.314 -0.139 0.462 C12 A1DA9 16 A1DA9 C14 C17 C 0 1 Y N N N N N -2.061 31.205 -32.151 2.070 0.545 0.274 C14 A1DA9 17 A1DA9 C16 C18 C 0 1 Y N N N N N -2.516 28.968 -30.938 4.363 1.641 0.075 C16 A1DA9 18 A1DA9 C18 C19 C 0 1 Y N N N N N -4.170 27.412 -32.157 6.061 0.108 -0.924 C18 A1DA9 19 A1DA9 C19 C20 C 0 1 Y N N N N N -5.414 27.214 -32.835 6.730 -1.115 -0.888 C19 A1DA9 20 A1DA9 C23 C21 C 0 1 Y N N N N N -6.288 28.314 -32.981 6.427 -2.045 0.126 C23 A1DA9 21 A1DA9 C25 C22 C 0 1 Y N N N N N -4.792 29.735 -31.901 4.864 -0.610 1.038 C25 A1DA9 22 A1DA9 C27 C23 C 0 1 Y N N N N N -0.741 28.244 -29.353 4.364 4.043 -0.001 C27 A1DA9 23 A1DA9 C29 C24 C 0 1 Y N N N N N -0.510 30.295 -30.574 2.269 2.866 0.188 C29 A1DA9 24 A1DA9 C32 C25 C 0 1 Y N N N N N -3.114 36.072 -34.422 -2.456 -1.899 1.162 C32 A1DA9 25 A1DA9 C33 C26 C 0 1 Y N N N N N -3.084 37.103 -35.359 -3.474 -2.831 1.164 C33 A1DA9 26 A1DA9 C34 C27 C 0 1 Y N N N N N -2.214 36.993 -36.476 -4.681 -2.546 0.544 C34 A1DA9 27 A1DA9 N03 N1 N 0 1 N N N N N N -1.036 35.774 -39.052 -6.668 0.238 -0.663 N03 A1DA9 28 A1DA9 N11 N2 N 0 1 N N N N N N -2.257 33.857 -33.599 -1.595 0.272 0.542 N11 A1DA9 29 A1DA9 N22 N3 N 0 1 Y N N N N N -7.417 27.884 -33.634 7.226 -3.142 -0.084 N22 A1DA9 30 A1DA9 N24 N4 N 0 1 Y N N N N N -6.000 29.576 -32.477 5.509 -1.755 1.041 N24 A1DA9 31 A1DA9 O01 O1 O 0 1 N N N N N N 0.712 35.507 -37.643 -6.731 -1.863 -1.382 O01 A1DA9 32 A1DA9 O31 O2 O 0 1 N N N N N N 0.005 33.864 -33.319 -0.054 -1.328 0.475 O31 A1DA9 33 A1DA9 O35 O3 O 0 1 N N N N N N -2.157 38.053 -37.343 -5.679 -3.466 0.543 O35 A1DA9 34 A1DA9 S30 S1 S 0 1 Y N N N N N 0.214 31.810 -31.138 0.536 2.587 0.321 S30 A1DA9 35 A1DA9 H201 H1 H 0 0 N N N N N N -5.650 25.072 -33.574 8.237 -1.308 -2.588 H201 A1DA9 36 A1DA9 H211 H2 H 0 0 N N N N N N -8.056 25.918 -34.446 8.737 -3.652 -1.566 H211 A1DA9 37 A1DA9 H261 H3 H 0 0 N N N N N N -2.573 27.191 -29.790 6.127 2.835 -0.090 H261 A1DA9 38 A1DA9 H281 H4 H 0 0 N N N N N N 0.954 29.619 -29.132 2.468 5.004 0.106 H281 A1DA9 39 A1DA9 H041 H5 H 0 0 N N N N N N 0.206 34.673 -40.349 -8.767 0.064 -0.716 H041 A1DA9 40 A1DA9 H042 H6 H 0 0 N N N N N N 0.447 36.453 -40.385 -8.008 0.526 -2.263 H042 A1DA9 41 A1DA9 H052 H7 H 0 0 N N N N N N -1.070 35.055 -42.293 -7.872 2.782 -1.660 H052 A1DA9 42 A1DA9 H051 H8 H 0 0 N N N N N N -1.334 36.786 -41.895 -9.187 2.348 -0.520 H051 A1DA9 43 A1DA9 H061 H9 H 0 0 N N N N N N -3.507 35.895 -41.377 -6.851 3.371 0.440 H061 A1DA9 44 A1DA9 H062 H10 H 0 0 N N N N N N -2.835 34.325 -40.821 -7.647 2.014 1.305 H062 A1DA9 45 A1DA9 H072 H11 H 0 0 N N N N N N -2.661 37.088 -39.449 -5.356 1.898 -0.732 H072 A1DA9 46 A1DA9 H071 H12 H 0 0 N N N N N N -3.120 35.513 -38.716 -5.467 1.086 0.860 H071 A1DA9 47 A1DA9 H091 H13 H 0 0 N N N N N N -0.787 34.006 -35.806 -3.967 0.585 -0.570 H091 A1DA9 48 A1DA9 H141 H14 H 0 0 N N N N N N -2.957 31.213 -32.755 2.426 -0.475 0.281 H141 A1DA9 49 A1DA9 H181 H15 H 0 0 N N N N N N -3.487 26.586 -32.027 6.275 0.837 -1.692 H181 A1DA9 50 A1DA9 H251 H16 H 0 0 N N N N N N -4.516 30.733 -31.595 4.129 -0.416 1.805 H251 A1DA9 51 A1DA9 H271 H17 H 0 0 N N N N N N -0.378 27.501 -28.658 4.909 4.972 -0.070 H271 A1DA9 52 A1DA9 H321 H18 H 0 0 N N N N N N -3.782 36.134 -33.576 -1.518 -2.127 1.646 H321 A1DA9 53 A1DA9 H331 H19 H 0 0 N N N N N N -3.713 37.973 -35.238 -3.329 -3.786 1.649 H331 A1DA9 54 A1DA9 H111 H20 H 0 0 N N N N N N -3.125 33.447 -33.320 -1.797 1.219 0.601 H111 A1DA9 55 A1DA9 H221 H21 H 0 0 N N N N N N -8.202 28.461 -33.858 7.230 -3.941 0.466 H221 A1DA9 56 A1DA9 H351 H22 H 0 0 N N N N N N -2.815 38.695 -37.103 -5.653 -4.074 -0.209 H351 A1DA9 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DA9 C05 C06 SING N N 1 A1DA9 C05 C04 SING N N 2 A1DA9 C06 C07 SING N N 3 A1DA9 C04 N03 SING N N 4 A1DA9 C07 N03 SING N N 5 A1DA9 N03 C02 SING N N 6 A1DA9 C02 O01 DOUB N N 7 A1DA9 C02 C08 SING N N 8 A1DA9 O35 C34 SING N N 9 A1DA9 C08 C34 DOUB Y N 10 A1DA9 C08 C09 SING Y N 11 A1DA9 C34 C33 SING Y N 12 A1DA9 C09 C10 DOUB Y N 13 A1DA9 C33 C32 DOUB Y N 14 A1DA9 C10 C32 SING Y N 15 A1DA9 C10 N11 SING N N 16 A1DA9 C21 N22 SING Y N 17 A1DA9 C21 C20 DOUB Y N 18 A1DA9 N22 C23 SING Y N 19 A1DA9 N11 C12 SING N N 20 A1DA9 C20 C19 SING Y N 21 A1DA9 O31 C12 DOUB N N 22 A1DA9 C12 C13 SING N N 23 A1DA9 C23 C19 DOUB Y N 24 A1DA9 C23 N24 SING Y N 25 A1DA9 C19 C18 SING Y N 26 A1DA9 N24 C25 DOUB Y N 27 A1DA9 C13 C14 DOUB Y N 28 A1DA9 C13 S30 SING Y N 29 A1DA9 C18 C17 DOUB Y N 30 A1DA9 C14 C15 SING Y N 31 A1DA9 C25 C17 SING Y N 32 A1DA9 C17 C16 SING N N 33 A1DA9 C15 C16 DOUB Y N 34 A1DA9 C15 C29 SING Y N 35 A1DA9 S30 C29 SING Y N 36 A1DA9 C16 C26 SING Y N 37 A1DA9 C29 C28 DOUB Y N 38 A1DA9 C26 C27 DOUB Y N 39 A1DA9 C28 C27 SING Y N 40 A1DA9 C20 H201 SING N N 41 A1DA9 C21 H211 SING N N 42 A1DA9 C26 H261 SING N N 43 A1DA9 C28 H281 SING N N 44 A1DA9 C04 H041 SING N N 45 A1DA9 C04 H042 SING N N 46 A1DA9 C05 H052 SING N N 47 A1DA9 C05 H051 SING N N 48 A1DA9 C06 H061 SING N N 49 A1DA9 C06 H062 SING N N 50 A1DA9 C07 H072 SING N N 51 A1DA9 C07 H071 SING N N 52 A1DA9 C09 H091 SING N N 53 A1DA9 C14 H141 SING N N 54 A1DA9 C18 H181 SING N N 55 A1DA9 C25 H251 SING N N 56 A1DA9 C27 H271 SING N N 57 A1DA9 C32 H321 SING N N 58 A1DA9 C33 H331 SING N N 59 A1DA9 N11 H111 SING N N 60 A1DA9 N22 H221 SING N N 61 A1DA9 O35 H351 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DA9 SMILES ACDLabs 14.52 "O=C(N1CCCC1)c1cc(ccc1O)NC(=O)c1cc2c(cccc2s1)c1cc2cc[NH]c2nc1" A1DA9 InChI InChI 1.06 "InChI=1S/C27H22N4O3S/c32-22-7-6-18(13-21(22)27(34)31-10-1-2-11-31)30-26(33)24-14-20-19(4-3-5-23(20)35-24)17-12-16-8-9-28-25(16)29-15-17/h3-9,12-15,32H,1-2,10-11H2,(H,28,29)(H,30,33)" A1DA9 InChIKey InChI 1.06 QKVMLJGYQDIKSM-UHFFFAOYSA-N A1DA9 SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(NC(=O)c2sc3cccc(c4cnc5[nH]ccc5c4)c3c2)cc1C(=O)N6CCCC6" A1DA9 SMILES CACTVS 3.385 "Oc1ccc(NC(=O)c2sc3cccc(c4cnc5[nH]ccc5c4)c3c2)cc1C(=O)N6CCCC6" A1DA9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2cc(sc2c1)C(=O)Nc3ccc(c(c3)C(=O)N4CCCC4)O)c5cc6cc[nH]c6nc5" A1DA9 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2cc(sc2c1)C(=O)Nc3ccc(c(c3)C(=O)N4CCCC4)O)c5cc6cc[nH]c6nc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DA9 "SYSTEMATIC NAME" ACDLabs 14.52 "(4M)-N-[4-hydroxy-3-(pyrrolidine-1-carbonyl)phenyl]-4-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1-benzothiophene-2-carboxamide" A1DA9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(4-oxidanyl-3-pyrrolidin-1-ylcarbonyl-phenyl)-4-(1~{H}-pyrrolo[2,3-b]pyridin-5-yl)-1-benzothiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DA9 "Create component" 2026-03-23 RCSB A1DA9 "Initial release" 2026-09-02 RCSB #