data_A1DAG # _chem_comp.id A1DAG _chem_comp.name "(2S)-2-(1-acetylpiperidin-4-yl)-2-(4-chlorophenyl)-N-{2-[(Z)-iminomethyl]pyrimidin-5-yl}acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-(1-acetylpiperidin-4-yl)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)acetamide bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-12 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.874 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DAG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11SG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DAG C1 C1 C 0 1 Y N N N N N 22.782 4.447 -14.343 0.696 -1.483 -0.421 C1 A1DAG 1 A1DAG C2 C2 C 0 1 Y N N N N N 22.411 4.787 -15.638 0.497 -1.935 0.871 C2 A1DAG 2 A1DAG C3 C3 C 0 1 Y N N N N N 21.671 3.919 -16.421 0.514 -3.291 1.139 C3 A1DAG 3 A1DAG O1 O1 O 0 1 N N N N N N 20.428 9.255 -10.086 5.113 4.149 -0.124 O1 A1DAG 4 A1DAG C11 C4 C 0 1 Y N N N N N 27.333 2.872 -14.563 -4.088 0.694 -1.393 C11 A1DAG 5 A1DAG C12 C5 C 0 1 N N N N N N 30.684 2.685 -16.018 -6.744 1.931 0.778 C12 A1DAG 6 A1DAG C13 C6 C 0 1 N N N N N N 22.989 6.792 -13.314 1.782 0.684 0.101 C13 A1DAG 7 A1DAG C14 C7 C 0 1 N N N N N N 23.884 7.711 -12.476 1.768 2.186 -0.194 C14 A1DAG 8 A1DAG C15 C8 C 0 1 N N N N N N 23.234 9.087 -12.359 2.846 2.877 0.647 C15 A1DAG 9 A1DAG C16 C9 C 0 1 N N N N N N 20.998 8.095 -12.554 4.237 0.768 0.554 C16 A1DAG 10 A1DAG C17 C10 C 0 1 N N N N N N 21.599 6.696 -12.672 3.143 0.100 -0.285 C17 A1DAG 11 A1DAG C18 C11 C 0 1 N N N N N N 21.457 9.611 -10.653 5.208 2.948 0.009 C18 A1DAG 12 A1DAG C19 C12 C 0 1 N N N N N N 22.275 10.753 -10.123 6.525 2.263 -0.251 C19 A1DAG 13 A1DAG N4 N1 N 0 1 N N N N N N 21.882 8.983 -11.785 4.137 2.224 0.389 N4 A1DAG 14 A1DAG C6 C13 C 0 1 N N S N N N 23.627 5.394 -13.512 0.683 -0.004 -0.711 C6 A1DAG 15 A1DAG C4 C14 C 0 1 Y N N N N N 21.288 2.703 -15.896 0.730 -4.196 0.115 C4 A1DAG 16 A1DAG CL CL1 CL 0 0 N N N N N N 20.258 1.656 -16.838 0.752 -5.899 0.451 CL A1DAG 17 A1DAG C5 C15 C 0 1 Y N N N N N 21.652 2.329 -14.620 0.929 -3.743 -1.177 C5 A1DAG 18 A1DAG C C16 C 0 1 Y N N N N N 22.400 3.204 -13.850 0.912 -2.387 -1.444 C A1DAG 19 A1DAG C7 C17 C 0 1 N N N N N N 24.986 5.481 -14.197 -0.657 0.571 -0.332 C7 A1DAG 20 A1DAG O O2 O 0 1 N N N N N N 25.179 6.213 -15.160 -0.727 1.445 0.506 O A1DAG 21 A1DAG N N2 N 0 1 N N N N N N 25.885 4.593 -13.741 -1.779 0.113 -0.923 N A1DAG 22 A1DAG C8 C18 C 0 1 Y N N N N N 27.118 4.218 -14.307 -3.028 0.566 -0.494 C8 A1DAG 23 A1DAG N2 N3 N 0 1 Y N N N N N 28.466 2.389 -15.086 -5.253 1.131 -0.952 N2 A1DAG 24 A1DAG C10 C19 C 0 1 Y N N N N N 29.440 3.269 -15.382 -5.422 1.445 0.325 C10 A1DAG 25 A1DAG N3 N4 N 0 1 N N N N N N 31.736 3.422 -16.023 -7.714 2.044 -0.067 N3 A1DAG 26 A1DAG N1 N5 N 0 1 Y N N N N N 29.339 4.592 -15.158 -4.438 1.336 1.208 N1 A1DAG 27 A1DAG C9 C20 C 0 1 Y N N N N N 28.189 5.043 -14.632 -3.247 0.900 0.842 C9 A1DAG 28 A1DAG H1 H1 H 0 1 N N N N N N 22.705 5.745 -16.040 0.329 -1.229 1.670 H1 A1DAG 29 A1DAG H2 H2 H 0 1 N N N N N N 21.397 4.190 -17.430 0.359 -3.644 2.148 H2 A1DAG 30 A1DAG H3 H3 H 0 1 N N N N N N 26.542 2.175 -14.327 -3.955 0.444 -2.435 H3 A1DAG 31 A1DAG H4 H4 H 0 1 N N N N N N 30.687 1.694 -16.448 -6.898 2.191 1.815 H4 A1DAG 32 A1DAG H5 H5 H 0 1 N N N N N N 22.871 7.249 -14.307 1.604 0.521 1.163 H5 A1DAG 33 A1DAG H6 H6 H 0 1 N N N N N N 24.014 7.280 -11.472 1.969 2.352 -1.252 H6 A1DAG 34 A1DAG H7 H7 H 0 1 N N N N N N 24.866 7.810 -12.962 0.790 2.597 0.060 H7 A1DAG 35 A1DAG H8 H8 H 0 1 N N N N N N 23.853 9.723 -11.710 2.907 3.930 0.369 H8 A1DAG 36 A1DAG H9 H9 H 0 1 N N N N N N 23.167 9.540 -13.359 2.597 2.790 1.704 H9 A1DAG 37 A1DAG H10 H10 H 0 1 N N N N N N 20.857 8.512 -13.562 4.101 0.509 1.604 H10 A1DAG 38 A1DAG H11 H11 H 0 1 N N N N N N 20.025 8.027 -12.045 5.216 0.428 0.218 H11 A1DAG 39 A1DAG H12 H12 H 0 1 N N N N N N 20.948 6.068 -13.298 3.144 -0.973 -0.097 H12 A1DAG 40 A1DAG H13 H13 H 0 1 N N N N N N 21.687 6.249 -11.671 3.332 0.285 -1.343 H13 A1DAG 41 A1DAG H14 H14 H 0 1 N N N N N N 21.800 11.155 -9.216 7.268 3.004 -0.547 H14 A1DAG 42 A1DAG H15 H15 H 0 1 N N N N N N 23.287 10.397 -9.880 6.858 1.757 0.655 H15 A1DAG 43 A1DAG H16 H16 H 0 1 N N N N N N 22.337 11.544 -10.885 6.404 1.533 -1.051 H16 A1DAG 44 A1DAG H17 H17 H 0 1 N N N N N N 23.772 4.945 -12.518 0.860 0.158 -1.774 H17 A1DAG 45 A1DAG H18 H18 H 0 1 N N N N N N 21.358 1.367 -14.226 1.098 -4.448 -1.977 H18 A1DAG 46 A1DAG H19 H19 H 0 1 N N N N N N 22.691 2.916 -12.851 1.071 -2.033 -2.452 H19 A1DAG 47 A1DAG H20 H20 H 0 1 N N N N N N 25.646 4.137 -12.884 -1.718 -0.531 -1.645 H20 A1DAG 48 A1DAG H21 H21 H 0 1 N N N N N N 32.511 2.965 -16.459 -8.581 2.362 0.229 H21 A1DAG 49 A1DAG H22 H22 H 0 1 N N N N N N 28.091 6.103 -14.452 -2.450 0.814 1.566 H22 A1DAG 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DAG CL C4 SING N N 1 A1DAG C3 C4 DOUB Y N 2 A1DAG C3 C2 SING Y N 3 A1DAG N3 C12 DOUB N N 4 A1DAG C12 C10 SING N N 5 A1DAG C4 C5 SING Y N 6 A1DAG C2 C1 DOUB Y N 7 A1DAG C10 N1 DOUB Y N 8 A1DAG C10 N2 SING Y N 9 A1DAG O C7 DOUB N N 10 A1DAG N1 C9 SING Y N 11 A1DAG N2 C11 DOUB Y N 12 A1DAG C9 C8 DOUB Y N 13 A1DAG C5 C DOUB Y N 14 A1DAG C11 C8 SING Y N 15 A1DAG C1 C SING Y N 16 A1DAG C1 C6 SING N N 17 A1DAG C8 N SING N N 18 A1DAG C7 N SING N N 19 A1DAG C7 C6 SING N N 20 A1DAG C6 C13 SING N N 21 A1DAG C13 C17 SING N N 22 A1DAG C13 C14 SING N N 23 A1DAG C17 C16 SING N N 24 A1DAG C16 N4 SING N N 25 A1DAG C14 C15 SING N N 26 A1DAG C15 N4 SING N N 27 A1DAG N4 C18 SING N N 28 A1DAG C18 C19 SING N N 29 A1DAG C18 O1 DOUB N N 30 A1DAG C2 H1 SING N N 31 A1DAG C3 H2 SING N N 32 A1DAG C11 H3 SING N N 33 A1DAG C12 H4 SING N N 34 A1DAG C13 H5 SING N N 35 A1DAG C14 H6 SING N N 36 A1DAG C14 H7 SING N N 37 A1DAG C15 H8 SING N N 38 A1DAG C15 H9 SING N N 39 A1DAG C16 H10 SING N N 40 A1DAG C16 H11 SING N N 41 A1DAG C17 H12 SING N N 42 A1DAG C17 H13 SING N N 43 A1DAG C19 H14 SING N N 44 A1DAG C19 H15 SING N N 45 A1DAG C19 H16 SING N N 46 A1DAG C6 H17 SING N N 47 A1DAG C5 H18 SING N N 48 A1DAG C H19 SING N N 49 A1DAG N H20 SING N N 50 A1DAG N3 H21 SING N N 51 A1DAG C9 H22 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DAG SMILES ACDLabs 14.52 "O=C(C)N1CCC(CC1)C(c1ccc(Cl)cc1)C(=O)Nc1cnc(C=N)nc1" A1DAG InChI InChI 1.06 "InChI=1S/C20H22ClN5O2/c1-13(27)26-8-6-15(7-9-26)19(14-2-4-16(21)5-3-14)20(28)25-17-11-23-18(10-22)24-12-17/h2-5,10-12,15,19,22H,6-9H2,1H3,(H,25,28)/b22-10-/t19-/m1/s1" A1DAG InChIKey InChI 1.06 RZLSOKIBZFIWEG-RCECTWRXSA-N A1DAG SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCC(CC1)[C@H](C(=O)Nc2cnc(C=N)nc2)c3ccc(Cl)cc3" A1DAG SMILES CACTVS 3.385 "CC(=O)N1CCC(CC1)[CH](C(=O)Nc2cnc(C=N)nc2)c3ccc(Cl)cc3" A1DAG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C\c1ncc(cn1)NC(=O)[C@H](c2ccc(cc2)Cl)C3CCN(CC3)C(=O)C" A1DAG SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(=O)N1CCC(CC1)C(c2ccc(cc2)Cl)C(=O)Nc3cnc(nc3)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DAG "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-2-(1-acetylpiperidin-4-yl)-2-(4-chlorophenyl)-N-{2-[(Z)-iminomethyl]pyrimidin-5-yl}acetamide" A1DAG "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-(4-chlorophenyl)-2-(1-ethanoylpiperidin-4-yl)-~{N}-[2-(iminomethyl)pyrimidin-5-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DAG "Create component" 2026-03-12 RCSB A1DAG "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1DAG _pdbx_chem_comp_synonyms.name "(2S)-2-(1-acetylpiperidin-4-yl)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)acetamide bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DAG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C12 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #