data_A1DAH # _chem_comp.id A1DAH _chem_comp.name "(2S)-2-(4-chlorophenyl)-N-{2-[(Z)-iminomethyl]pyrimidin-5-yl}-2-[1-(1-methyl-1H-pyrazole-4-carbonyl)piperidin-4-yl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 Cl N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)-2-[1-(1-methyl-1H-pyrazole-4-carbonyl)piperidin-4-yl]acetamide bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-12 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.935 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DAH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11SH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DAH C1 C1 C 0 1 Y N N N N N -19.246 -10.696 -12.282 -6.549 -1.762 -0.660 C1 A1DAH 1 A1DAH C2 C2 C 0 1 Y N N N N N -20.214 -10.627 -11.294 -5.474 -1.475 0.157 C2 A1DAH 2 A1DAH C3 C3 C 0 1 Y N N N N N -19.563 -11.113 -10.147 -5.805 -0.312 0.889 C3 A1DAH 3 A1DAH O1 O1 O 0 1 N N N N N N -25.119 -6.231 -15.499 1.844 -1.286 0.557 O1 A1DAH 4 A1DAH C11 C4 C 0 1 N N N N N N -24.873 -5.497 -14.550 1.831 -0.417 -0.288 C11 A1DAH 5 A1DAH C12 C5 C 0 1 Y N N N N N -26.979 -4.191 -14.597 4.150 -0.774 -0.662 C12 A1DAH 6 A1DAH C13 C6 C 0 1 Y N N N N N -27.277 -2.838 -14.647 5.083 -0.996 -1.676 C13 A1DAH 7 A1DAH C14 C7 C 0 1 Y N N N N N -29.237 -3.216 -15.768 6.412 -2.125 -0.174 C14 A1DAH 8 A1DAH C15 C8 C 0 1 N N N N N N -30.478 -2.584 -16.341 7.660 -2.870 0.096 C15 A1DAH 9 A1DAH C16 C9 C 0 1 Y N N N N N -27.906 -5.003 -15.236 4.427 -1.267 0.613 C16 A1DAH 10 A1DAH C17 C10 C 0 1 Y N N N N N -22.609 -4.596 -14.613 0.670 1.752 -0.364 C17 A1DAH 11 A1DAH C18 C11 C 0 1 Y N N N N N -22.243 -4.887 -15.924 0.959 2.195 0.914 C18 A1DAH 12 A1DAH C19 C12 C 0 1 Y N N N N N -21.436 -4.028 -16.650 1.086 3.549 1.163 C19 A1DAH 13 A1DAH C20 C13 C 0 1 Y N N N N N -21.049 -2.834 -16.083 0.924 4.460 0.135 C20 A1DAH 14 A1DAH C21 C14 C 0 1 Y N N N N N -21.435 -2.493 -14.803 0.635 4.016 -1.143 C21 A1DAH 15 A1DAH C22 C15 C 0 1 Y N N N N N -22.228 -3.370 -14.082 0.508 2.662 -1.392 C22 A1DAH 16 A1DAH CL CL1 CL 0 0 N N N N N N -20.056 -1.737 -16.999 1.082 6.160 0.448 CL A1DAH 17 A1DAH C10 C16 C 0 1 N N S N N N -23.526 -5.529 -13.839 0.539 0.276 -0.637 C10 A1DAH 18 A1DAH N3 N1 N 0 1 N N N N N N -25.723 -4.563 -14.083 2.972 -0.070 -0.917 N3 A1DAH 19 A1DAH N6 N2 N 0 1 Y N N N N N -29.020 -4.540 -15.813 5.551 -1.928 0.816 N6 A1DAH 20 A1DAH N5 N3 N 0 1 N N N N N N -31.512 -3.350 -16.385 7.898 -3.325 1.282 N5 A1DAH 21 A1DAH N4 N4 N 0 1 Y N N N N N -28.381 -2.343 -15.214 6.186 -1.666 -1.398 N4 A1DAH 22 A1DAH C7 C17 C 0 1 N N N N N N -22.987 -6.975 -13.722 -0.595 -0.301 0.214 C7 A1DAH 23 A1DAH C6 C18 C 0 1 N N N N N N -21.610 -7.004 -13.057 -1.907 0.403 -0.139 C6 A1DAH 24 A1DAH C5 C19 C 0 1 N N N N N N -21.087 -8.441 -13.080 -3.032 -0.153 0.739 C5 A1DAH 25 A1DAH C8 C20 C 0 1 N N N N N N -23.946 -7.885 -12.945 -0.727 -1.800 -0.062 C8 A1DAH 26 A1DAH C9 C21 C 0 1 N N N N N N -23.397 -9.316 -12.937 -1.839 -2.381 0.817 C9 A1DAH 27 A1DAH N2 N5 N 0 1 N N N N N N -22.018 -9.370 -12.416 -3.072 -1.614 0.589 N2 A1DAH 28 A1DAH C4 C22 C 0 1 N N N N N N -21.658 -10.243 -11.452 -4.216 -2.239 0.249 C4 A1DAH 29 A1DAH O O2 O 0 1 N N N N N N -22.469 -10.759 -10.684 -4.212 -3.433 0.018 O A1DAH 30 A1DAH N1 N6 N 0 1 Y N N N N N -18.294 -11.410 -10.383 -7.000 0.065 0.529 N1 A1DAH 31 A1DAH N N7 N 0 1 Y N N N N N -18.115 -11.120 -11.696 -7.484 -0.824 -0.437 N A1DAH 32 A1DAH C C23 C 0 1 N N N N N N -16.814 -11.324 -12.319 -8.791 -0.746 -1.094 C A1DAH 33 A1DAH H1 H1 H 0 1 N N N N N N -19.376 -10.454 -13.327 -6.623 -2.586 -1.354 H1 A1DAH 34 A1DAH H2 H2 H 0 1 N N N N N N -20.041 -11.230 -9.186 -5.178 0.178 1.619 H2 A1DAH 35 A1DAH H3 H3 H 0 1 N N N N N N -26.578 -2.145 -14.203 4.904 -0.626 -2.674 H3 A1DAH 36 A1DAH H4 H4 H 0 1 N N N N N N -30.499 -1.562 -16.690 8.373 -3.035 -0.698 H4 A1DAH 37 A1DAH H5 H5 H 0 1 N N N N N N -27.717 -6.066 -15.269 3.730 -1.110 1.424 H5 A1DAH 38 A1DAH H6 H6 H 0 1 N N N N N N -22.595 -5.799 -16.383 1.085 1.484 1.716 H6 A1DAH 39 A1DAH H7 H7 H 0 1 N N N N N N -21.114 -4.290 -17.647 1.311 3.895 2.161 H7 A1DAH 40 A1DAH H8 H8 H 0 1 N N N N N N -21.123 -1.555 -14.369 0.508 4.726 -1.946 H8 A1DAH 41 A1DAH H9 H9 H 0 1 N N N N N N -22.556 -3.096 -13.090 0.288 2.315 -2.390 H9 A1DAH 42 A1DAH H10 H10 H 0 1 N N N N N N -23.657 -5.128 -12.823 0.316 0.120 -1.692 H10 A1DAH 43 A1DAH H11 H11 H 0 1 N N N N N N -25.423 -4.070 -13.266 2.974 0.668 -1.546 H11 A1DAH 44 A1DAH H12 H12 H 0 1 N N N N N N -32.307 -2.884 -16.773 8.717 -3.813 1.459 H12 A1DAH 45 A1DAH H13 H13 H 0 1 N N N N N N -22.883 -7.380 -14.740 -0.372 -0.144 1.270 H13 A1DAH 46 A1DAH H14 H14 H 0 1 N N N N N N -20.919 -6.349 -13.608 -1.804 1.474 0.035 H14 A1DAH 47 A1DAH H15 H15 H 0 1 N N N N N N -21.694 -6.657 -12.017 -2.143 0.227 -1.189 H15 A1DAH 48 A1DAH H16 H16 H 0 1 N N N N N N -20.955 -8.756 -14.126 -2.842 0.103 1.781 H16 A1DAH 49 A1DAH H17 H17 H 0 1 N N N N N N -20.118 -8.476 -12.561 -3.985 0.273 0.424 H17 A1DAH 50 A1DAH H18 H18 H 0 1 N N N N N N -24.039 -7.522 -11.911 -0.975 -1.956 -1.112 H18 A1DAH 51 A1DAH H19 H19 H 0 1 N N N N N N -24.934 -7.874 -13.428 0.215 -2.297 0.169 H19 A1DAH 52 A1DAH H20 H20 H 0 1 N N N N N N -24.042 -9.941 -12.303 -2.005 -3.425 0.554 H20 A1DAH 53 A1DAH H21 H21 H 0 1 N N N N N N -23.405 -9.706 -13.965 -1.552 -2.307 1.866 H21 A1DAH 54 A1DAH H22 H22 H 0 1 N N N N N N -16.107 -11.716 -11.573 -9.523 -1.309 -0.516 H22 A1DAH 55 A1DAH H23 H23 H 0 1 N N N N N N -16.912 -12.044 -13.145 -9.104 0.296 -1.159 H23 A1DAH 56 A1DAH H24 H24 H 0 1 N N N N N N -16.441 -10.366 -12.710 -8.719 -1.166 -2.098 H24 A1DAH 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DAH CL C20 SING N N 1 A1DAH C19 C20 DOUB Y N 2 A1DAH C19 C18 SING Y N 3 A1DAH N5 C15 DOUB N N 4 A1DAH C15 C14 SING N N 5 A1DAH C20 C21 SING Y N 6 A1DAH C18 C17 DOUB Y N 7 A1DAH N6 C14 DOUB Y N 8 A1DAH N6 C16 SING Y N 9 A1DAH C14 N4 SING Y N 10 A1DAH O1 C11 DOUB N N 11 A1DAH C16 C12 DOUB Y N 12 A1DAH N4 C13 DOUB Y N 13 A1DAH C21 C22 DOUB Y N 14 A1DAH C13 C12 SING Y N 15 A1DAH C17 C22 SING Y N 16 A1DAH C17 C10 SING N N 17 A1DAH C12 N3 SING N N 18 A1DAH C11 N3 SING N N 19 A1DAH C11 C10 SING N N 20 A1DAH C10 C7 SING N N 21 A1DAH C7 C6 SING N N 22 A1DAH C7 C8 SING N N 23 A1DAH C5 C6 SING N N 24 A1DAH C5 N2 SING N N 25 A1DAH C8 C9 SING N N 26 A1DAH C9 N2 SING N N 27 A1DAH N2 C4 SING N N 28 A1DAH C N SING N N 29 A1DAH C1 N SING Y N 30 A1DAH C1 C2 DOUB Y N 31 A1DAH N N1 SING Y N 32 A1DAH C4 C2 SING N N 33 A1DAH C4 O DOUB N N 34 A1DAH C2 C3 SING Y N 35 A1DAH N1 C3 DOUB Y N 36 A1DAH C1 H1 SING N N 37 A1DAH C3 H2 SING N N 38 A1DAH C13 H3 SING N N 39 A1DAH C15 H4 SING N N 40 A1DAH C16 H5 SING N N 41 A1DAH C18 H6 SING N N 42 A1DAH C19 H7 SING N N 43 A1DAH C21 H8 SING N N 44 A1DAH C22 H9 SING N N 45 A1DAH C10 H10 SING N N 46 A1DAH N3 H11 SING N N 47 A1DAH N5 H12 SING N N 48 A1DAH C7 H13 SING N N 49 A1DAH C6 H14 SING N N 50 A1DAH C6 H15 SING N N 51 A1DAH C5 H16 SING N N 52 A1DAH C5 H17 SING N N 53 A1DAH C8 H18 SING N N 54 A1DAH C8 H19 SING N N 55 A1DAH C9 H20 SING N N 56 A1DAH C9 H21 SING N N 57 A1DAH C H22 SING N N 58 A1DAH C H23 SING N N 59 A1DAH C H24 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DAH SMILES ACDLabs 14.52 "O=C(N1CCC(CC1)C(c1ccc(Cl)cc1)C(=O)Nc1cnc(C=N)nc1)c1cn(C)nc1" A1DAH InChI InChI 1.06 "InChI=1S/C23H24ClN7O2/c1-30-14-17(11-28-30)23(33)31-8-6-16(7-9-31)21(15-2-4-18(24)5-3-15)22(32)29-19-12-26-20(10-25)27-13-19/h2-5,10-14,16,21,25H,6-9H2,1H3,(H,29,32)/b25-10-/t21-/m1/s1" A1DAH InChIKey InChI 1.06 NHXWRPAZLLXWIC-SMNLHKSPSA-N A1DAH SMILES_CANONICAL CACTVS 3.385 "Cn1cc(cn1)C(=O)N2CCC(CC2)[C@H](C(=O)Nc3cnc(C=N)nc3)c4ccc(Cl)cc4" A1DAH SMILES CACTVS 3.385 "Cn1cc(cn1)C(=O)N2CCC(CC2)[CH](C(=O)Nc3cnc(C=N)nc3)c4ccc(Cl)cc4" A1DAH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C\c1ncc(cn1)NC(=O)[C@H](c2ccc(cc2)Cl)C3CCN(CC3)C(=O)c4cnn(c4)C" A1DAH SMILES "OpenEye OEToolkits" 3.1.0.0 "Cn1cc(cn1)C(=O)N2CCC(CC2)C(c3ccc(cc3)Cl)C(=O)Nc4cnc(nc4)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DAH "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-2-(4-chlorophenyl)-N-{2-[(Z)-iminomethyl]pyrimidin-5-yl}-2-[1-(1-methyl-1H-pyrazole-4-carbonyl)piperidin-4-yl]acetamide" A1DAH "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-(4-chlorophenyl)-~{N}-[2-(iminomethyl)pyrimidin-5-yl]-2-[1-(1-methylpyrazol-4-yl)carbonylpiperidin-4-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DAH "Create component" 2026-03-12 RCSB A1DAH "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1DAH _pdbx_chem_comp_synonyms.name "(2S)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)-2-[1-(1-methyl-1H-pyrazole-4-carbonyl)piperidin-4-yl]acetamide bound form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DAH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #