data_A1DAI # _chem_comp.id A1DAI _chem_comp.name "(2S)-2-(4-chlorophenyl)-2-cyclopentyl-N-{2-[(E)-iminomethyl]pyrimidin-5-yl}acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)-2-cyclopentylacetamide bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-12 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.823 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DAI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11SD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DAI C01 C1 C 0 1 Y N N N N N -22.716 -2.530 -16.169 4.054 -1.846 -0.033 C01 A1DAI 1 A1DAI C02 C2 C 0 1 Y N N N N N -22.982 -2.180 -14.839 3.866 -1.189 -1.236 C02 A1DAI 2 A1DAI C03 C3 C 0 1 Y N N N N N -23.762 -3.017 -14.052 2.858 -0.253 -1.362 C03 A1DAI 3 A1DAI C04 C4 C 0 1 Y N N N N N -24.254 -4.218 -14.579 2.037 0.028 -0.286 C04 A1DAI 4 A1DAI C05 C5 C 0 1 Y N N N N N -23.992 -4.553 -15.911 2.224 -0.627 0.917 C05 A1DAI 5 A1DAI C06 C6 C 0 1 Y N N N N N -23.221 -3.714 -16.700 3.232 -1.564 1.044 C06 A1DAI 6 A1DAI CL07 CL1 CL 0 0 N N N N N N -21.755 -1.490 -17.165 5.317 -3.027 0.124 CL07 A1DAI 7 A1DAI C08 C7 C 0 1 N N S N N N -25.139 -5.124 -13.736 0.937 1.049 -0.424 C08 A1DAI 8 A1DAI C09 C8 C 0 1 N N N N N N -26.480 -5.239 -14.448 -0.393 0.394 -0.155 C09 A1DAI 9 A1DAI N10 N1 N 0 1 N N N N N N -27.261 -4.113 -14.325 -1.481 0.762 -0.861 N10 A1DAI 10 A1DAI O11 O1 O 0 1 N N N N N N -26.834 -6.212 -15.093 -0.486 -0.464 0.697 O11 A1DAI 11 A1DAI C12 C9 C 0 1 N N N N N N -24.473 -6.477 -13.426 1.162 2.180 0.582 C12 A1DAI 12 A1DAI C13 C10 C 0 1 N N N N N N -23.278 -6.325 -12.487 2.504 2.877 0.301 C13 A1DAI 13 A1DAI C14 C11 C 0 1 N N N N N N -23.055 -7.762 -12.030 2.177 4.350 -0.019 C14 A1DAI 14 A1DAI C15 C12 C 0 1 N N N N N N -24.443 -8.416 -11.999 0.808 4.592 0.663 C15 A1DAI 15 A1DAI C16 C13 C 0 1 N N N N N N -25.395 -7.408 -12.634 0.066 3.254 0.424 C16 A1DAI 16 A1DAI C17 C14 C 0 1 Y N N N N N -28.540 -3.833 -14.869 -2.724 0.198 -0.572 C17 A1DAI 17 A1DAI C18 C15 C 0 1 Y N N N N N -28.760 -2.499 -15.164 -3.894 0.952 -0.680 C18 A1DAI 18 A1DAI N19 N2 N 0 1 Y N N N N N -29.903 -2.122 -15.682 -5.051 0.384 -0.398 N19 A1DAI 19 A1DAI C20 C16 C 0 1 Y N N N N N -30.885 -3.022 -15.938 -5.111 -0.885 -0.018 C20 A1DAI 20 A1DAI N21 N3 N 0 1 Y N N N N N -30.690 -4.340 -15.680 -4.021 -1.633 0.096 N21 A1DAI 21 A1DAI C22 C17 C 0 1 Y N N N N N -29.547 -4.756 -15.157 -2.829 -1.135 -0.175 C22 A1DAI 22 A1DAI C23 C18 C 0 1 N N N N N N -32.148 -2.499 -16.513 -6.429 -1.483 0.289 C23 A1DAI 23 A1DAI N24 N4 N 0 1 N N N N N N -33.332 -2.936 -16.288 -6.507 -2.717 0.661 N24 A1DAI 24 A1DAI H021 H1 H 0 0 N N N N N N -22.583 -1.265 -14.428 4.508 -1.409 -2.077 H021 A1DAI 25 A1DAI H031 H2 H 0 0 N N N N N N -23.989 -2.742 -13.033 2.711 0.260 -2.301 H031 A1DAI 26 A1DAI H051 H3 H 0 0 N N N N N N -24.391 -5.467 -16.326 1.583 -0.406 1.758 H051 A1DAI 27 A1DAI H061 H4 H 0 0 N N N N N N -23.012 -3.978 -17.726 3.378 -2.076 1.984 H061 A1DAI 28 A1DAI H081 H5 H 0 0 N N N N N N -25.315 -4.617 -12.776 0.944 1.456 -1.435 H081 A1DAI 29 A1DAI H101 H6 H 0 0 N N N N N N -26.867 -3.382 -13.768 -1.399 1.419 -1.570 H101 A1DAI 30 A1DAI H121 H7 H 0 0 N N N N N N -24.159 -6.963 -14.361 1.153 1.783 1.597 H121 A1DAI 31 A1DAI H131 H8 H 0 0 N N N N N N -22.398 -5.933 -13.019 3.147 2.819 1.179 H131 A1DAI 32 A1DAI H132 H9 H 0 0 N N N N N N -23.517 -5.667 -11.638 2.996 2.410 -0.553 H132 A1DAI 33 A1DAI H141 H10 H 0 0 N N N N N N -22.399 -8.291 -12.737 2.935 5.010 0.403 H141 A1DAI 34 A1DAI H142 H11 H 0 0 N N N N N N -22.602 -7.778 -11.028 2.098 4.498 -1.096 H142 A1DAI 35 A1DAI H151 H12 H 0 0 N N N N N N -24.437 -9.353 -12.576 0.935 4.778 1.729 H151 A1DAI 36 A1DAI H152 H13 H 0 0 N N N N N N -24.744 -8.626 -10.962 0.279 5.418 0.186 H152 A1DAI 37 A1DAI H161 H14 H 0 0 N N N N N N -25.945 -6.850 -11.862 -0.354 3.225 -0.582 H161 A1DAI 38 A1DAI H162 H15 H 0 0 N N N N N N -26.109 -7.912 -13.302 -0.717 3.113 1.169 H162 A1DAI 39 A1DAI H181 H16 H 0 0 N N N N N N -27.989 -1.768 -14.967 -3.852 1.986 -0.989 H181 A1DAI 40 A1DAI H221 H17 H 0 0 N N N N N N -29.394 -5.806 -14.954 -1.946 -1.750 -0.085 H221 A1DAI 41 A1DAI H231 H18 H 0 0 N N N N N N -32.061 -1.663 -17.192 -7.325 -0.887 0.201 H231 A1DAI 42 A1DAI H241 H19 H 0 0 N N N N N N -34.024 -2.420 -16.792 -7.371 -3.109 0.862 H241 A1DAI 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DAI C01 C02 DOUB Y N 1 A1DAI C01 C06 SING Y N 2 A1DAI C01 CL07 SING N N 3 A1DAI C02 C03 SING Y N 4 A1DAI C03 C04 DOUB Y N 5 A1DAI C04 C05 SING Y N 6 A1DAI C04 C08 SING N N 7 A1DAI C05 C06 DOUB Y N 8 A1DAI C08 C09 SING N N 9 A1DAI C08 C12 SING N N 10 A1DAI C09 N10 SING N N 11 A1DAI C09 O11 DOUB N N 12 A1DAI N10 C17 SING N N 13 A1DAI C12 C13 SING N N 14 A1DAI C12 C16 SING N N 15 A1DAI C13 C14 SING N N 16 A1DAI C14 C15 SING N N 17 A1DAI C15 C16 SING N N 18 A1DAI C17 C18 DOUB Y N 19 A1DAI C17 C22 SING Y N 20 A1DAI C18 N19 SING Y N 21 A1DAI N19 C20 DOUB Y N 22 A1DAI C20 N21 SING Y N 23 A1DAI C20 C23 SING N N 24 A1DAI N21 C22 DOUB Y N 25 A1DAI C23 N24 DOUB N N 26 A1DAI C02 H021 SING N N 27 A1DAI C03 H031 SING N N 28 A1DAI C05 H051 SING N N 29 A1DAI C06 H061 SING N N 30 A1DAI C08 H081 SING N N 31 A1DAI N10 H101 SING N N 32 A1DAI C12 H121 SING N N 33 A1DAI C13 H131 SING N N 34 A1DAI C13 H132 SING N N 35 A1DAI C14 H141 SING N N 36 A1DAI C14 H142 SING N N 37 A1DAI C15 H151 SING N N 38 A1DAI C15 H152 SING N N 39 A1DAI C16 H161 SING N N 40 A1DAI C16 H162 SING N N 41 A1DAI C18 H181 SING N N 42 A1DAI C22 H221 SING N N 43 A1DAI C23 H231 SING N N 44 A1DAI N24 H241 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DAI SMILES ACDLabs 14.52 "N=Cc1ncc(NC(=O)C(c2ccc(Cl)cc2)C2CCCC2)cn1" A1DAI InChI InChI 1.06 "InChI=1S/C18H19ClN4O/c19-14-7-5-13(6-8-14)17(12-3-1-2-4-12)18(24)23-15-10-21-16(9-20)22-11-15/h5-12,17,20H,1-4H2,(H,23,24)/t17-/m0/s1" A1DAI InChIKey InChI 1.06 ADKDLGMGNBEQLH-KRWDZBQOSA-N A1DAI SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1)[C@H](C2CCCC2)C(=O)Nc3cnc(C=N)nc3" A1DAI SMILES CACTVS 3.385 "Clc1ccc(cc1)[CH](C2CCCC2)C(=O)Nc3cnc(C=N)nc3" A1DAI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1[C@H](C2CCCC2)C(=O)Nc3cnc(nc3)C=N)Cl" A1DAI SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1C(C2CCCC2)C(=O)Nc3cnc(nc3)C=N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DAI "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-2-(4-chlorophenyl)-2-cyclopentyl-N-{2-[(E)-iminomethyl]pyrimidin-5-yl}acetamide" A1DAI "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-(4-chlorophenyl)-2-cyclopentyl-~{N}-[2-(iminomethyl)pyrimidin-5-yl]ethanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1DAI _pdbx_chem_comp_synonyms.name "(2S)-2-(4-chlorophenyl)-N-(2-cyanopyrimidin-5-yl)-2-cyclopentylacetamide bound form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DAI "Create component" 2026-03-12 RCSB A1DAI "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DAI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #