data_A1DAJ # _chem_comp.id A1DAJ _chem_comp.name "(2S)-2-(1-acetylpiperidin-4-yl)-1-[(3R,5S)-4-(chloroacetyl)-3,5-dimethylpiperazin-1-yl]-2-(4-chlorophenyl)ethan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H31 Cl2 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-12 _chem_comp.pdbx_modified_date 2026-08-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DAJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11SI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DAJ C1 C1 C 0 1 Y N N N N N -19.973 21.166 -18.795 0.573 -4.066 0.269 C1 A1DAJ 1 A1DAJ C2 C2 C 0 1 Y N N N N N -19.572 20.459 -17.685 0.407 -3.412 -0.939 C2 A1DAJ 2 A1DAJ C3 C3 C 0 1 Y N N N N N -18.685 21.042 -16.800 0.658 -2.056 -1.031 C3 A1DAJ 3 A1DAJ O1 O1 O 0 1 N N N N N N -18.906 27.820 -13.206 7.160 1.201 -1.531 O1 A1DAJ 4 A1DAJ O2 O2 O 0 1 N N N N N N -11.942 20.871 -20.285 -5.382 2.347 0.067 O2 A1DAJ 5 A1DAJ C11 C4 C 0 1 N N N N N N -18.310 26.699 -15.858 5.187 -0.104 -0.206 C11 A1DAJ 6 A1DAJ C12 C5 C 0 1 N N N N N N -18.502 25.186 -15.844 3.728 -0.355 -0.603 C12 A1DAJ 7 A1DAJ C13 C6 C 0 1 N N N N N N -17.857 27.998 -13.808 6.433 1.900 -0.857 C13 A1DAJ 8 A1DAJ C14 C7 C 0 1 N N N N N N -17.012 29.209 -13.551 6.661 3.388 -0.798 C14 A1DAJ 9 A1DAJ C15 C8 C 0 1 N N S N N N -15.068 21.681 -19.423 -2.743 2.371 0.872 C15 A1DAJ 10 A1DAJ C16 C9 C 0 1 N N N N N N -15.244 22.765 -18.363 -1.797 1.495 1.703 C16 A1DAJ 11 A1DAJ C17 C10 C 0 1 N N N N N N -13.743 21.667 -16.813 -1.485 -0.049 -0.276 C17 A1DAJ 12 A1DAJ C18 C11 C 0 1 N N R N N N -13.507 20.470 -17.725 -2.431 0.826 -1.108 C18 A1DAJ 13 A1DAJ C19 C12 C 0 1 N N N N N N -14.236 19.226 -17.247 -3.254 -0.057 -2.048 C19 A1DAJ 14 A1DAJ C20 C13 C 0 1 N N N N N N -16.331 20.860 -19.625 -3.856 2.919 1.767 C20 A1DAJ 15 A1DAJ C21 C14 C 0 1 N N N N N N -13.063 20.404 -20.137 -4.667 1.452 -0.332 C21 A1DAJ 16 A1DAJ C22 C15 C 0 1 N N N N N N -13.597 19.326 -21.029 -5.273 0.236 -0.982 C22 A1DAJ 17 A1DAJ N N1 N 0 1 N N N N N N -17.442 27.118 -14.752 5.422 1.345 -0.159 N A1DAJ 18 A1DAJ C C16 C 0 1 Y N N N N N -19.518 22.446 -19.032 0.989 -3.362 1.384 C A1DAJ 19 A1DAJ O O3 O 0 1 N N N N N N -15.734 21.482 -14.983 0.911 1.553 1.811 O A1DAJ 20 A1DAJ C10 C17 C 0 1 N N N N N N -16.115 26.484 -14.792 4.533 2.179 0.662 C10 A1DAJ 21 A1DAJ C4 C18 C 0 1 Y N N N N N -18.214 22.334 -16.997 1.074 -1.353 0.084 C4 A1DAJ 22 A1DAJ C5 C19 C 0 1 Y N N N N N -18.651 23.030 -18.123 1.240 -2.006 1.291 C5 A1DAJ 23 A1DAJ C6 C20 C 0 1 N N S N N N -17.298 22.936 -15.942 1.347 0.125 -0.016 C6 A1DAJ 24 A1DAJ C7 C21 C 0 1 N N N N N N -15.972 22.173 -15.966 0.439 0.869 0.928 C7 A1DAJ 25 A1DAJ C8 C22 C 0 1 N N N N N N -17.140 24.481 -15.968 2.806 0.401 0.356 C8 A1DAJ 26 A1DAJ C9 C23 C 0 1 N N N N N N -16.225 24.955 -14.829 3.082 1.903 0.255 C9 A1DAJ 27 A1DAJ N1 N2 N 0 1 N N N N N N -13.864 20.846 -19.124 -3.329 1.547 -0.195 N1 A1DAJ 28 A1DAJ N2 N3 N 0 1 N N N N N N -15.092 22.209 -17.012 -0.899 0.775 0.790 N2 A1DAJ 29 A1DAJ CL CL1 CL 0 0 N N N N N N -21.090 20.435 -19.909 0.251 -5.768 0.386 CL A1DAJ 30 A1DAJ H1 H1 H 0 1 N N N N N N -19.946 19.461 -17.508 0.082 -3.962 -1.811 H1 A1DAJ 31 A1DAJ H2 H2 H 0 1 N N N N N N -18.352 20.482 -15.939 0.529 -1.546 -1.974 H2 A1DAJ 32 A1DAJ H10 H3 H 0 1 N N N N N N -17.850 26.996 -16.812 5.377 -0.537 0.776 H10 A1DAJ 33 A1DAJ H11 H4 H 0 1 N N N N N N -19.289 27.189 -15.755 5.849 -0.558 -0.943 H11 A1DAJ 34 A1DAJ H12 H5 H 0 1 N N N N N N -19.142 24.892 -16.689 3.563 -0.002 -1.621 H12 A1DAJ 35 A1DAJ H13 H6 H 0 1 N N N N N N -18.981 24.888 -14.900 3.515 -1.422 -0.549 H13 A1DAJ 36 A1DAJ H14 H7 H 0 1 N N N N N N -17.491 29.835 -12.784 7.517 3.649 -1.421 H14 A1DAJ 37 A1DAJ H15 H8 H 0 1 N N N N N N -16.018 28.895 -13.199 5.775 3.906 -1.164 H15 A1DAJ 38 A1DAJ H16 H9 H 0 1 N N N N N N -16.906 29.786 -14.481 6.857 3.686 0.232 H16 A1DAJ 39 A1DAJ H17 H10 H 0 1 N N N N N N -14.872 22.199 -20.373 -2.185 3.196 0.431 H17 A1DAJ 40 A1DAJ H18 H11 H 0 1 N N N N N N -14.485 23.546 -18.518 -1.211 2.125 2.373 H18 A1DAJ 41 A1DAJ H19 H12 H 0 1 N N N N N N -16.248 23.204 -18.461 -2.378 0.780 2.285 H19 A1DAJ 42 A1DAJ H21 H13 H 0 1 N N N N N N -13.631 21.351 -15.765 -2.043 -0.874 0.164 H21 A1DAJ 43 A1DAJ H20 H14 H 0 1 N N N N N N -13.002 22.447 -17.042 -0.694 -0.442 -0.915 H20 A1DAJ 44 A1DAJ H22 H15 H 0 1 N N N N N N -12.430 20.248 -17.703 -1.850 1.540 -1.692 H22 A1DAJ 45 A1DAJ H23 H16 H 0 1 N N N N N N -13.935 18.998 -16.214 -3.884 -0.724 -1.460 H23 A1DAJ 46 A1DAJ H25 H17 H 0 1 N N N N N N -15.321 19.401 -17.282 -3.881 0.572 -2.681 H25 A1DAJ 47 A1DAJ H24 H18 H 0 1 N N N N N N -13.980 18.378 -17.899 -2.583 -0.647 -2.672 H24 A1DAJ 48 A1DAJ H28 H19 H 0 1 N N N N N N -17.175 21.532 -19.840 -4.500 2.100 2.089 H28 A1DAJ 49 A1DAJ H26 H20 H 0 1 N N N N N N -16.188 20.169 -20.469 -3.415 3.400 2.641 H26 A1DAJ 50 A1DAJ H27 H21 H 0 1 N N N N N N -16.544 20.285 -18.712 -4.445 3.647 1.210 H27 A1DAJ 51 A1DAJ H31 H22 H 0 1 N N N N N N -13.585 18.372 -20.482 -5.026 0.229 -2.043 H31 A1DAJ 52 A1DAJ H29 H23 H 0 1 N N N N N N -14.631 19.575 -21.310 -4.877 -0.664 -0.511 H29 A1DAJ 53 A1DAJ H H25 H 0 1 N N N N N N -19.833 22.985 -19.913 1.118 -3.872 2.327 H A1DAJ 54 A1DAJ H9 H26 H 0 1 N N N N N N -15.550 26.780 -13.896 4.671 1.932 1.715 H9 A1DAJ 55 A1DAJ H8 H27 H 0 1 N N N N N N -15.582 26.826 -15.691 4.767 3.231 0.500 H8 A1DAJ 56 A1DAJ H3 H28 H 0 1 N N N N N N -18.308 24.041 -18.289 1.565 -1.456 2.162 H3 A1DAJ 57 A1DAJ H4 H29 H 0 1 N N N N N N -17.761 22.703 -14.972 1.164 0.460 -1.037 H4 A1DAJ 58 A1DAJ H5 H30 H 0 1 N N N N N N -16.683 24.767 -16.927 2.989 0.065 1.377 H5 A1DAJ 59 A1DAJ H7 H31 H 0 1 N N N N N N -16.636 24.603 -13.871 2.409 2.442 0.921 H7 A1DAJ 60 A1DAJ H6 H32 H 0 1 N N N N N N -15.222 24.528 -14.976 2.923 2.234 -0.771 H6 A1DAJ 61 A1DAJ CL1 CL2 CL 0 0 N Y N N N N -12.647 19.160 -22.471 -7.065 0.278 -0.782 CL1 A1DAJ 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DAJ C22 C21 SING N N 1 A1DAJ O2 C21 DOUB N N 2 A1DAJ C21 N1 SING N N 3 A1DAJ CL C1 SING N N 4 A1DAJ C20 C15 SING N N 5 A1DAJ C15 N1 SING N N 6 A1DAJ C15 C16 SING N N 7 A1DAJ N1 C18 SING N N 8 A1DAJ C C1 DOUB Y N 9 A1DAJ C C5 SING Y N 10 A1DAJ C1 C2 SING Y N 11 A1DAJ C16 N2 SING N N 12 A1DAJ C5 C4 DOUB Y N 13 A1DAJ C18 C19 SING N N 14 A1DAJ C18 C17 SING N N 15 A1DAJ C2 C3 DOUB Y N 16 A1DAJ N2 C17 SING N N 17 A1DAJ N2 C7 SING N N 18 A1DAJ C4 C3 SING Y N 19 A1DAJ C4 C6 SING N N 20 A1DAJ C8 C6 SING N N 21 A1DAJ C8 C12 SING N N 22 A1DAJ C8 C9 SING N N 23 A1DAJ C7 C6 SING N N 24 A1DAJ C7 O DOUB N N 25 A1DAJ C11 C12 SING N N 26 A1DAJ C11 N SING N N 27 A1DAJ C9 C10 SING N N 28 A1DAJ C10 N SING N N 29 A1DAJ N C13 SING N N 30 A1DAJ C13 C14 SING N N 31 A1DAJ C13 O1 DOUB N N 32 A1DAJ C2 H1 SING N N 33 A1DAJ C3 H2 SING N N 34 A1DAJ C11 H10 SING N N 35 A1DAJ C11 H11 SING N N 36 A1DAJ C12 H12 SING N N 37 A1DAJ C12 H13 SING N N 38 A1DAJ C14 H14 SING N N 39 A1DAJ C14 H15 SING N N 40 A1DAJ C14 H16 SING N N 41 A1DAJ C15 H17 SING N N 42 A1DAJ C16 H18 SING N N 43 A1DAJ C16 H19 SING N N 44 A1DAJ C17 H21 SING N N 45 A1DAJ C17 H20 SING N N 46 A1DAJ C18 H22 SING N N 47 A1DAJ C19 H23 SING N N 48 A1DAJ C19 H25 SING N N 49 A1DAJ C19 H24 SING N N 50 A1DAJ C20 H28 SING N N 51 A1DAJ C20 H26 SING N N 52 A1DAJ C20 H27 SING N N 53 A1DAJ C22 H31 SING N N 54 A1DAJ C22 H29 SING N N 55 A1DAJ C H SING N N 56 A1DAJ C10 H9 SING N N 57 A1DAJ C10 H8 SING N N 58 A1DAJ C5 H3 SING N N 59 A1DAJ C6 H4 SING N N 60 A1DAJ C8 H5 SING N N 61 A1DAJ C9 H7 SING N N 62 A1DAJ C9 H6 SING N N 63 A1DAJ C22 CL1 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DAJ SMILES ACDLabs 14.52 "CC1CN(CC(C)N1C(=O)CCl)C(=O)C(c1ccc(Cl)cc1)C1CCN(CC1)C(C)=O" A1DAJ InChI InChI 1.06 "InChI=1S/C23H31Cl2N3O3/c1-15-13-27(14-16(2)28(15)21(30)12-24)23(31)22(18-4-6-20(25)7-5-18)19-8-10-26(11-9-19)17(3)29/h4-7,15-16,19,22H,8-14H2,1-3H3/t15-,16+,22-/m1/s1" A1DAJ InChIKey InChI 1.06 VVXNHVTXAHPESY-ZMPRRUGASA-N A1DAJ SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(C[C@H](C)N1C(=O)CCl)C(=O)[C@@H](C2CCN(CC2)C(C)=O)c3ccc(Cl)cc3" A1DAJ SMILES CACTVS 3.385 "C[CH]1CN(C[CH](C)N1C(=O)CCl)C(=O)[CH](C2CCN(CC2)C(C)=O)c3ccc(Cl)cc3" A1DAJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CN(C[C@@H](N1C(=O)CCl)C)C(=O)[C@H](c2ccc(cc2)Cl)C3CCN(CC3)C(=O)C" A1DAJ SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CN(CC(N1C(=O)CCl)C)C(=O)C(c2ccc(cc2)Cl)C3CCN(CC3)C(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DAJ "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-2-(1-acetylpiperidin-4-yl)-1-[(3R,5S)-4-(chloroacetyl)-3,5-dimethylpiperazin-1-yl]-2-(4-chlorophenyl)ethan-1-one" A1DAJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-1-[(3~{S},5~{R})-4-(2-chloranylethanoyl)-3,5-dimethyl-piperazin-1-yl]-2-(4-chlorophenyl)-2-(1-ethanoylpiperidin-4-yl)ethanone" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DAJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C22 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DAJ "Create component" 2026-03-12 RCSB A1DAJ "Initial release" 2026-08-26 RCSB A1DAJ "Modify atom id" 2026-08-27 RCSB #