data_A1DBD # _chem_comp.id A1DBD _chem_comp.name "N-[(1S)-1-(2,3-dihydro[1,4]dioxino[2,3-c]pyridin-7-yl)-2-methylpropyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-25 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DBD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 14AP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DBD O1 O1 O 0 1 N N N N N N -43.223 -25.692 -0.900 4.867 -1.074 0.982 O1 A1DBD 1 A1DBD C1 C1 C 0 1 N N N N N N -43.779 -32.159 0.722 0.887 3.544 -0.012 C1 A1DBD 2 A1DBD C2 C2 C 0 1 N N N N N N -45.004 -31.522 1.403 -0.153 2.637 0.648 C2 A1DBD 3 A1DBD C3 C3 C 0 1 N N N N N N -46.185 -31.421 0.416 -1.545 3.247 0.475 C3 A1DBD 4 A1DBD C4 C4 C 0 1 N N S N N N -44.681 -30.216 2.189 -0.116 1.256 -0.010 C4 A1DBD 5 A1DBD C5 C5 C 0 1 Y N N N N N -45.672 -29.615 4.437 -2.278 0.081 -0.180 C5 A1DBD 6 A1DBD C6 C6 C 0 1 Y N N N N N -44.393 -29.394 6.367 -3.477 0.204 -2.147 C6 A1DBD 7 A1DBD C7 C7 C 0 1 Y N N N N N -46.573 -28.967 6.562 -4.400 -1.045 -0.449 C7 A1DBD 8 A1DBD C8 C8 C 0 1 Y N N N N N -46.811 -29.242 5.188 -3.289 -0.733 0.355 C8 A1DBD 9 A1DBD C10 C9 C 0 1 Y N N N N N -48.782 -28.682 6.120 -4.687 -2.043 1.540 C10 A1DBD 10 A1DBD C11 C10 C 0 1 Y N N N N N -44.302 -28.996 1.346 1.231 0.622 0.229 C11 A1DBD 11 A1DBD C12 C11 C 0 1 Y N N N N N -45.323 -28.174 0.823 1.970 0.169 -0.847 C12 A1DBD 12 A1DBD C13 C12 C 0 1 Y N N N N N -44.972 -27.049 0.055 3.210 -0.413 -0.612 C13 A1DBD 13 A1DBD C14 C13 C 0 1 Y N N N N N -43.601 -26.780 -0.153 3.660 -0.515 0.702 C14 A1DBD 14 A1DBD C15 C14 C 0 1 Y N N N N N -42.648 -27.656 0.416 2.859 -0.038 1.726 C15 A1DBD 15 A1DBD C16 C15 C 0 1 N N N N N N -44.163 -25.396 -1.919 5.459 -1.872 -0.051 C16 A1DBD 16 A1DBD C17 C16 C 0 1 N N N N N N -45.531 -25.135 -1.266 5.347 -1.107 -1.376 C17 A1DBD 17 A1DBD C9 C17 C 0 1 Y N N N N N -48.214 -29.056 4.930 -3.512 -1.399 1.637 C9 A1DBD 18 A1DBD N1 N1 N 0 1 N N N N N N -45.804 -29.911 3.072 -1.163 0.411 0.569 N1 A1DBD 19 A1DBD N2 N2 N 0 1 Y N N N N N -44.469 -29.681 5.065 -2.416 0.521 -1.426 N2 A1DBD 20 A1DBD N3 N3 N 0 1 Y N N N N N -45.371 -29.029 7.202 -4.448 -0.555 -1.687 N3 A1DBD 21 A1DBD N4 N4 N 0 1 Y N N N N N -47.799 -28.630 7.096 -5.227 -1.839 0.297 N4 A1DBD 22 A1DBD N5 N5 N 0 1 Y N N N N N -42.987 -28.738 1.154 1.687 0.508 1.461 N5 A1DBD 23 A1DBD O2 O2 O 0 1 N N N N N N -45.959 -26.241 -0.470 3.960 -0.872 -1.645 O2 A1DBD 24 A1DBD H3 H1 H 0 1 N N N N N N -42.950 -32.221 1.442 0.708 3.581 -1.086 H3 A1DBD 25 A1DBD H1 H2 H 0 1 N N N N N N -44.038 -33.169 0.373 0.809 4.549 0.404 H1 A1DBD 26 A1DBD H2 H3 H 0 1 N N N N N N -43.474 -31.541 -0.136 1.886 3.150 0.177 H2 A1DBD 27 A1DBD H4 H4 H 0 1 N N N N N N -45.323 -32.247 2.166 0.072 2.539 1.710 H4 A1DBD 28 A1DBD H5 H5 H 0 1 N N N N N N -47.048 -30.964 0.922 -1.770 3.344 -0.587 H5 A1DBD 29 A1DBD H6 H6 H 0 1 N N N N N N -45.892 -30.800 -0.443 -2.286 2.600 0.945 H6 A1DBD 30 A1DBD H7 H7 H 0 1 N N N N N N -46.456 -32.428 0.065 -1.572 4.231 0.944 H7 A1DBD 31 A1DBD H8 H8 H 0 1 N N N N N N -43.812 -30.443 2.825 -0.284 1.360 -1.082 H8 A1DBD 32 A1DBD H10 H9 H 0 1 N N N N N N -43.408 -29.467 6.805 -3.550 0.582 -3.156 H10 A1DBD 33 A1DBD H12 H10 H 0 1 N N N N N N -49.828 -28.463 6.273 -5.137 -2.634 2.324 H12 A1DBD 34 A1DBD H14 H11 H 0 1 N N N N N N -46.361 -28.406 1.010 1.591 0.265 -1.853 H14 A1DBD 35 A1DBD H15 H12 H 0 1 N N N N N N -41.600 -27.452 0.254 3.197 -0.112 2.749 H15 A1DBD 36 A1DBD H17 H13 H 0 1 N N N N N N -44.239 -26.248 -2.611 6.508 -2.053 0.181 H17 A1DBD 37 A1DBD H16 H14 H 0 1 N N N N N N -43.840 -24.502 -2.472 4.930 -2.822 -0.129 H16 A1DBD 38 A1DBD H18 H15 H 0 1 N N N N N N -45.456 -24.244 -0.626 5.872 -0.154 -1.296 H18 A1DBD 39 A1DBD H19 H16 H 0 1 N N N N N N -46.275 -24.957 -2.057 5.782 -1.700 -2.181 H19 A1DBD 40 A1DBD H11 H17 H 0 1 N N N N N N -48.720 -29.186 3.985 -2.859 -1.377 2.497 H11 A1DBD 41 A1DBD H9 H18 H 0 1 N N N N N N -46.260 -29.119 2.666 -1.074 0.083 1.478 H9 A1DBD 42 A1DBD H13 H19 H 0 1 N N N N N N -47.957 -28.383 8.052 -6.072 -2.205 -0.009 H13 A1DBD 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DBD C16 C17 SING N N 1 A1DBD C16 O1 SING N N 2 A1DBD C17 O2 SING N N 3 A1DBD O1 C14 SING N N 4 A1DBD O2 C13 SING N N 5 A1DBD C14 C13 DOUB Y N 6 A1DBD C14 C15 SING Y N 7 A1DBD C13 C12 SING Y N 8 A1DBD C3 C2 SING N N 9 A1DBD C15 N5 DOUB Y N 10 A1DBD C1 C2 SING N N 11 A1DBD C12 C11 DOUB Y N 12 A1DBD N5 C11 SING Y N 13 A1DBD C11 C4 SING N N 14 A1DBD C2 C4 SING N N 15 A1DBD C4 N1 SING N N 16 A1DBD N1 C5 SING N N 17 A1DBD C5 N2 DOUB Y N 18 A1DBD C5 C8 SING Y N 19 A1DBD C9 C8 SING Y N 20 A1DBD C9 C10 DOUB Y N 21 A1DBD N2 C6 SING Y N 22 A1DBD C8 C7 DOUB Y N 23 A1DBD C10 N4 SING Y N 24 A1DBD C6 N3 DOUB Y N 25 A1DBD C7 N4 SING Y N 26 A1DBD C7 N3 SING Y N 27 A1DBD C1 H3 SING N N 28 A1DBD C1 H1 SING N N 29 A1DBD C1 H2 SING N N 30 A1DBD C2 H4 SING N N 31 A1DBD C3 H5 SING N N 32 A1DBD C3 H6 SING N N 33 A1DBD C3 H7 SING N N 34 A1DBD C4 H8 SING N N 35 A1DBD C6 H10 SING N N 36 A1DBD C10 H12 SING N N 37 A1DBD C12 H14 SING N N 38 A1DBD C15 H15 SING N N 39 A1DBD C16 H17 SING N N 40 A1DBD C16 H16 SING N N 41 A1DBD C17 H18 SING N N 42 A1DBD C17 H19 SING N N 43 A1DBD C9 H11 SING N N 44 A1DBD N1 H9 SING N N 45 A1DBD N4 H13 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DBD SMILES ACDLabs 14.52 "CC(C)C(Nc1ncnc2[NH]ccc21)c1ncc2OCCOc2c1" A1DBD InChI InChI 1.06 "InChI=1S/C17H19N5O2/c1-10(2)15(12-7-13-14(8-19-12)24-6-5-23-13)22-17-11-3-4-18-16(11)20-9-21-17/h3-4,7-10,15H,5-6H2,1-2H3,(H2,18,20,21,22)/t15-/m0/s1" A1DBD InChIKey InChI 1.06 PJPHOEMFZKBWQW-HNNXBMFYSA-N A1DBD SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]ccc12)c3cc4OCCOc4cn3" A1DBD SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]ccc12)c3cc4OCCOc4cn3" A1DBD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@@H](c1cc2c(cn1)OCCO2)Nc3c4cc[nH]c4ncn3" A1DBD SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(c1cc2c(cn1)OCCO2)Nc3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DBD "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(1S)-1-(2,3-dihydro[1,4]dioxino[2,3-c]pyridin-7-yl)-2-methylpropyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine" A1DBD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(1~{S})-1-(2,3-dihydro-[1,4]dioxino[2,3-c]pyridin-7-yl)-2-methyl-propyl]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DBD "Create component" 2026-03-25 RCSB A1DBD "Initial release" 2026-09-16 RCSB #