data_A1DBX # _chem_comp.id A1DBX _chem_comp.name "(4M)-N-[3-(dimethylcarbamoyl)-4-hydroxyphenyl]-4-(1H-pyrrolo[2,3-b]pyridin-5-yl)-3H-1lambda~4~-benzothiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H22 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-01 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DBX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12CV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DBX C10 C1 C 0 1 Y N N N N N 23.539 5.677 31.236 -2.630 1.528 -0.176 C10 A1DBX 1 A1DBX C13 C2 C 0 1 Y N N N N N 21.163 8.395 32.140 -5.761 0.054 0.905 C13 A1DBX 2 A1DBX C15 C3 C 0 1 Y N N N N N 19.349 9.779 33.440 -7.502 -1.760 1.691 C15 A1DBX 3 A1DBX C20 C4 C 0 1 Y N N N N N 20.510 6.132 31.853 -4.558 -0.693 -1.041 C20 A1DBX 4 A1DBX C21 C5 C 0 1 Y N N N N N 23.231 7.798 30.035 -4.698 2.772 -0.007 C21 A1DBX 5 A1DBX C22 C6 C 0 1 Y N N N N N 24.474 7.597 29.407 -3.988 3.955 -0.018 C22 A1DBX 6 A1DBX C24 C7 C 0 1 Y N N N N N 24.757 5.494 30.600 -1.938 2.718 -0.180 C24 A1DBX 7 A1DBX C28 C8 C 0 1 Y N N N N N 22.312 -1.022 35.381 4.228 -2.467 -1.119 C28 A1DBX 8 A1DBX C02 C9 C 0 1 N N N N N N 24.711 0.438 37.945 6.719 -0.426 0.834 C02 A1DBX 9 A1DBX C03 C10 C 0 1 Y N N N N N 23.834 0.212 36.651 5.475 -0.838 0.156 C03 A1DBX 10 A1DBX C04 C11 C 0 1 Y N N N N N 23.883 1.152 35.660 4.368 0.010 0.147 C04 A1DBX 11 A1DBX C05 C12 C 0 1 Y N N N N N 23.136 1.006 34.500 3.198 -0.390 -0.483 C05 A1DBX 12 A1DBX C07 C13 C 0 1 N N N N N N 24.191 2.511 33.012 0.846 -0.062 -0.435 C07 A1DBX 13 A1DBX C08 C14 C 0 1 N N N N N N 24.210 3.561 32.157 -0.260 0.786 -0.342 C08 A1DBX 14 A1DBX C09 C15 C 0 1 N N N N N N 23.296 4.587 32.095 -1.695 0.357 -0.269 C09 A1DBX 15 A1DBX C11 C16 C 0 1 Y N N N N N 22.752 6.836 30.950 -4.028 1.556 -0.085 C11 A1DBX 16 A1DBX C12 C17 C 0 1 Y N N N N N 21.472 7.139 31.669 -4.795 0.285 -0.073 C12 A1DBX 17 A1DBX C14 C18 C 0 1 Y N N N N N 19.984 8.691 32.807 -6.451 -1.158 0.867 C14 A1DBX 18 A1DBX C16 C19 C 0 1 Y N N N N N 18.133 9.341 33.874 -7.772 -2.963 1.159 C16 A1DBX 19 A1DBX C18 C20 C 0 1 Y N N N N N 19.107 7.573 32.960 -6.160 -2.094 -0.145 C18 A1DBX 20 A1DBX C23 C21 C 0 1 Y N N N N N 25.208 6.480 29.648 -2.608 3.926 -0.102 C23 A1DBX 21 A1DBX C27 C22 C 0 1 Y N N N N N 22.318 -0.055 34.426 3.134 -1.627 -1.120 C27 A1DBX 22 A1DBX C29 C23 C 0 1 Y N N N N N 23.065 -0.877 36.492 5.401 -2.085 -0.483 C29 A1DBX 23 A1DBX C32 C24 C 0 1 N N N N N N 22.668 0.405 39.490 8.353 1.275 1.447 C32 A1DBX 24 A1DBX C33 C25 C 0 1 N N N N N N 24.973 0.805 40.404 6.511 1.756 -0.231 C33 A1DBX 25 A1DBX N06 N1 N 0 1 N N N N N N 23.147 2.009 33.583 2.089 0.456 -0.493 N06 A1DBX 26 A1DBX N17 N2 N 0 1 Y N N N N N 18.010 7.985 33.584 -6.980 -3.177 0.063 N17 A1DBX 27 A1DBX N19 N3 N 0 1 Y N N N N N 19.319 6.317 32.476 -5.234 -1.821 -1.055 N19 A1DBX 28 A1DBX N31 N4 N 0 1 N N N N N N 24.114 0.550 39.210 7.181 0.832 0.688 N31 A1DBX 29 A1DBX O01 O1 O 0 1 N N N N N N 25.899 0.619 37.825 7.328 -1.220 1.524 O01 A1DBX 30 A1DBX O26 O2 O 0 1 N N N N N N 25.273 1.989 33.250 0.687 -1.271 -0.463 O26 A1DBX 31 A1DBX O30 O3 O 0 1 N N N N N N 23.084 -1.861 37.453 6.473 -2.916 -0.478 O30 A1DBX 32 A1DBX S25 S1 S 0 1 N N N N N N 25.519 4.024 31.100 -0.219 2.339 -0.295 S25 A1DBX 33 A1DBX H131 H1 H 0 0 N N N N N N 21.876 9.191 31.982 -5.966 0.787 1.670 H131 A1DBX 34 A1DBX H151 H2 H 0 0 N N N N N N 19.751 10.774 33.559 -7.969 -1.321 2.560 H151 A1DBX 35 A1DBX H201 H3 H 0 0 N N N N N N 20.733 5.146 31.474 -3.813 -0.514 -1.803 H201 A1DBX 36 A1DBX H211 H4 H 0 0 N N N N N N 22.648 8.681 29.819 -5.776 2.790 0.062 H211 A1DBX 37 A1DBX H221 H5 H 0 0 N N N N N N 24.850 8.343 28.722 -4.507 4.900 0.043 H221 A1DBX 38 A1DBX H281 H6 H 0 0 N N N N N N 21.705 -1.906 35.251 4.170 -3.427 -1.611 H281 A1DBX 39 A1DBX H041 H7 H 0 0 N N N N N N 24.512 2.021 35.782 4.418 0.971 0.637 H041 A1DBX 40 A1DBX H091 H8 H 0 0 N N N N N N 23.202 4.995 33.112 -1.831 -0.276 0.608 H091 A1DBX 41 A1DBX H1 H9 H 0 1 N N N N N N 22.337 4.144 31.788 -1.938 -0.221 -1.161 H1 A1DBX 42 A1DBX H161 H10 H 0 0 N N N N N N 17.386 9.948 34.364 -8.505 -3.658 1.540 H161 A1DBX 43 A1DBX H231 H11 H 0 0 N N N N N N 26.139 6.328 29.122 -2.050 4.851 -0.110 H231 A1DBX 44 A1DBX H271 H12 H 0 0 N N N N N N 21.646 -0.143 33.585 2.225 -1.930 -1.617 H271 A1DBX 45 A1DBX H322 H13 H 0 0 N N N N N N 22.487 0.543 40.566 9.257 1.071 0.873 H322 A1DBX 46 A1DBX H323 H14 H 0 0 N N N N N N 22.107 1.163 38.924 8.278 2.345 1.639 H323 A1DBX 47 A1DBX H321 H15 H 0 0 N N N N N N 22.335 -0.599 39.188 8.396 0.738 2.395 H321 A1DBX 48 A1DBX H331 H16 H 0 0 N N N N N N 24.343 0.863 41.304 5.718 2.283 0.299 H331 A1DBX 49 A1DBX H333 H17 H 0 0 N N N N N N 25.698 -0.015 40.516 7.235 2.477 -0.613 H333 A1DBX 50 A1DBX H332 H18 H 0 0 N N N N N N 25.512 1.755 40.272 6.083 1.196 -1.062 H332 A1DBX 51 A1DBX H061 H19 H 0 0 N N N N N N 22.261 2.396 33.326 2.212 1.417 -0.543 H061 A1DBX 52 A1DBX H171 H20 H 0 0 N N N N N N 17.222 7.413 33.810 -6.995 -3.976 -0.486 H171 A1DBX 53 A1DBX H301 H21 H 0 0 N N N N N N 23.660 -1.601 38.162 7.072 -2.790 -1.227 H301 A1DBX 54 A1DBX H2 H2 H 0 1 N N N N N N 25.708 3.188 30.123 0.080 2.672 -1.564 H2 A1DBX 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DBX C22 C23 DOUB Y N 1 A1DBX C22 C21 SING Y N 2 A1DBX C23 C24 SING Y N 3 A1DBX C21 C11 DOUB Y N 4 A1DBX C24 S25 SING N N 5 A1DBX C24 C10 DOUB Y N 6 A1DBX C11 C10 SING Y N 7 A1DBX C11 C12 SING N N 8 A1DBX S25 C08 DOUB N N 9 A1DBX C10 C09 SING N N 10 A1DBX C12 C20 DOUB Y N 11 A1DBX C12 C13 SING Y N 12 A1DBX C20 N19 SING Y N 13 A1DBX C09 C08 SING N N 14 A1DBX C13 C14 DOUB Y N 15 A1DBX C08 C07 SING N N 16 A1DBX N19 C18 DOUB Y N 17 A1DBX C14 C18 SING Y N 18 A1DBX C14 C15 SING Y N 19 A1DBX C18 N17 SING Y N 20 A1DBX C07 O26 DOUB N N 21 A1DBX C07 N06 SING N N 22 A1DBX C15 C16 DOUB Y N 23 A1DBX N06 C05 SING N N 24 A1DBX N17 C16 SING Y N 25 A1DBX C27 C05 DOUB Y N 26 A1DBX C27 C28 SING Y N 27 A1DBX C05 C04 SING Y N 28 A1DBX C28 C29 DOUB Y N 29 A1DBX C04 C03 DOUB Y N 30 A1DBX C29 C03 SING Y N 31 A1DBX C29 O30 SING N N 32 A1DBX C03 C02 SING N N 33 A1DBX O01 C02 DOUB N N 34 A1DBX C02 N31 SING N N 35 A1DBX N31 C32 SING N N 36 A1DBX N31 C33 SING N N 37 A1DBX C13 H131 SING N N 38 A1DBX C15 H151 SING N N 39 A1DBX C20 H201 SING N N 40 A1DBX C21 H211 SING N N 41 A1DBX C22 H221 SING N N 42 A1DBX C28 H281 SING N N 43 A1DBX C04 H041 SING N N 44 A1DBX C09 H091 SING N N 45 A1DBX C09 H1 SING N N 46 A1DBX C16 H161 SING N N 47 A1DBX C23 H231 SING N N 48 A1DBX C27 H271 SING N N 49 A1DBX C32 H322 SING N N 50 A1DBX C32 H323 SING N N 51 A1DBX C32 H321 SING N N 52 A1DBX C33 H331 SING N N 53 A1DBX C33 H333 SING N N 54 A1DBX C33 H332 SING N N 55 A1DBX N06 H061 SING N N 56 A1DBX N17 H171 SING N N 57 A1DBX O30 H301 SING N N 58 A1DBX S25 H2 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DBX SMILES ACDLabs 14.52 "CN(C)C(=O)c1cc(ccc1O)NC(=O)C=1Cc2c(cccc2S=1)c1cc2cc[NH]c2nc1" A1DBX InChI InChI 1.06 "InChI=1S/C25H22N4O3S/c1-29(2)25(32)19-11-16(6-7-20(19)30)28-24(31)22-12-18-17(4-3-5-21(18)33-22)15-10-14-8-9-26-23(14)27-13-15/h3-11,13,30,33H,12H2,1-2H3,(H,26,27)(H,28,31)" A1DBX InChIKey InChI 1.06 AUOVRAVQEJWMTR-UHFFFAOYSA-N A1DBX SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)c1cc(NC(=O)C2=[SH]c3cccc(c4cnc5[nH]ccc5c4)c3C2)ccc1O" A1DBX SMILES CACTVS 3.385 "CN(C)C(=O)c1cc(NC(=O)C2=[SH]c3cccc(c4cnc5[nH]ccc5c4)c3C2)ccc1O" A1DBX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN(C)C(=O)c1cc(ccc1O)NC(=O)C2=Sc3cccc(c3C2)c4cc5cc[nH]c5nc4" A1DBX SMILES "OpenEye OEToolkits" 3.1.0.0 "CN(C)C(=O)c1cc(ccc1O)NC(=O)C2=Sc3cccc(c3C2)c4cc5cc[nH]c5nc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DBX "SYSTEMATIC NAME" ACDLabs 14.52 "(4M)-N-[3-(dimethylcarbamoyl)-4-hydroxyphenyl]-4-(1H-pyrrolo[2,3-b]pyridin-5-yl)-3H-1lambda~4~-benzothiophene-2-carboxamide" A1DBX "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[3-(dimethylcarbamoyl)-4-oxidanyl-phenyl]-4-(1~{H}-pyrrolo[2,3-b]pyridin-5-yl)-3~{H}-1-benzothiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DBX "Create component" 2026-04-01 RCSB A1DBX "Initial release" 2026-09-02 RCSB #