data_A1DC0 # _chem_comp.id A1DC0 _chem_comp.name "5-chloro-6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 Cl4 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-20 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.093 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DC0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12SV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DC0 C1 C1 C 0 1 Y N N N N N 8.878 0.034 19.403 2.208 0.275 0.589 C1 A1DC0 1 A1DC0 C2 C2 C 0 1 Y N N N N N 8.301 0.888 20.359 2.754 -0.957 0.926 C2 A1DC0 2 A1DC0 C3 C3 C 0 1 Y N N N N N 6.930 1.121 20.363 4.062 -1.249 0.585 C3 A1DC0 3 A1DC0 C4 C4 C 0 1 Y N N N N N 6.074 0.525 19.432 4.826 -0.314 -0.093 C4 A1DC0 4 A1DC0 C6 C5 C 0 1 Y N N N N N 8.024 -0.573 18.460 2.977 1.210 -0.092 C6 A1DC0 5 A1DC0 C5 C6 C 0 1 Y N N N N N 6.659 -0.328 18.482 4.284 0.914 -0.431 C5 A1DC0 6 A1DC0 C8 C7 C 0 1 N N N N N N 10.731 -1.296 18.480 0.514 1.918 0.478 C8 A1DC0 7 A1DC0 C9 C8 C 0 1 N N N N N N 12.135 -1.751 18.872 -0.873 2.272 1.023 C9 A1DC0 8 A1DC0 C11 C9 C 0 1 N N N N N N 12.566 0.501 19.773 -1.445 -0.186 0.933 C11 A1DC0 9 A1DC0 C12 C10 C 0 1 N N N N N N 11.164 0.928 19.354 -0.034 -0.443 0.391 C12 A1DC0 10 A1DC0 C13 C11 C 0 1 N N N N N N 14.193 -0.471 18.244 -2.979 1.500 0.029 C13 A1DC0 11 A1DC0 C14 C12 C 0 1 N N N N N N 14.681 -1.654 17.424 -3.859 0.410 -0.450 C14 A1DC0 12 A1DC0 C17 C13 C 0 1 N N N N N N 16.079 -3.646 17.474 -4.540 -1.042 -2.198 C17 A1DC0 13 A1DC0 C19 C14 C 0 1 N N N N N N 14.831 -3.031 15.406 -5.639 -1.216 -0.142 C19 A1DC0 14 A1DC0 C20 C15 C 0 1 N N N N N N 14.321 -1.876 16.134 -4.785 -0.140 0.380 C20 A1DC0 15 A1DC0 N10 N1 N 0 1 N N N N N N 13.052 -0.604 18.937 -1.812 1.207 0.637 N10 A1DC0 16 A1DC0 N16 N2 N 0 1 N N N N N N 15.534 -2.518 18.063 -3.751 -0.054 -1.745 N16 A1DC0 17 A1DC0 N18 N3 N 0 1 N N N N N N 15.686 -3.833 16.162 -5.467 -1.623 -1.417 N18 A1DC0 18 A1DC0 N7 N4 N 0 1 N N N N N N 10.258 -0.223 19.376 0.885 0.570 0.928 N7 A1DC0 19 A1DC0 O15 O1 O 0 1 N N N N N N 14.892 0.551 18.209 -3.309 2.660 -0.125 O15 A1DC0 20 A1DC0 O21 O2 O 0 1 N N N N N N 14.564 -3.316 14.241 -6.481 -1.737 0.566 O21 A1DC0 21 A1DC0 O22 O3 O 0 1 N N N N N N 16.839 -4.403 18.065 -4.413 -1.421 -3.347 O22 A1DC0 22 A1DC0 CL23 CL1 CL 0 0 N N N N N N 13.243 -0.809 15.284 -4.953 0.414 2.016 CL23 A1DC0 23 A1DC0 CL24 CL2 CL 0 0 N N N N N N 6.292 2.202 21.589 4.746 -2.787 1.007 CL24 A1DC0 24 A1DC0 CL25 CL3 CL 0 0 N N N N N N 4.356 0.824 19.447 6.468 -0.684 -0.521 CL25 A1DC0 25 A1DC0 CL26 CL4 CL 0 0 N N N N N N 5.662 -1.118 17.274 5.245 2.083 -1.281 CL26 A1DC0 26 A1DC0 H1 H1 H 0 1 N N N N N N 8.928 1.367 21.097 2.159 -1.686 1.456 H1 A1DC0 27 A1DC0 H2 H2 H 0 1 N N N N N N 8.437 -1.235 17.713 2.554 2.168 -0.355 H2 A1DC0 28 A1DC0 H3 H3 H 0 1 N N N N N N 10.749 -0.921 17.446 0.494 1.945 -0.612 H3 A1DC0 29 A1DC0 H4 H4 H 0 1 N N N N N N 10.043 -2.151 18.547 1.244 2.638 0.847 H4 A1DC0 30 A1DC0 H5 H5 H 0 1 N N N N N N 12.095 -2.238 19.857 -0.831 2.346 2.110 H5 A1DC0 31 A1DC0 H6 H6 H 0 1 N N N N N N 12.505 -2.467 18.124 -1.202 3.221 0.600 H6 A1DC0 32 A1DC0 H7 H7 H 0 1 N N N N N N 12.544 0.175 20.823 -2.151 -0.862 0.451 H7 A1DC0 33 A1DC0 H8 H8 H 0 1 N N N N N N 13.249 1.357 19.670 -1.458 -0.350 2.011 H8 A1DC0 34 A1DC0 H9 H9 H 0 1 N N N N N N 11.199 1.343 18.336 0.298 -1.435 0.697 H9 A1DC0 35 A1DC0 H10 H10 H 0 1 N N N N N N 10.794 1.695 20.050 -0.047 -0.383 -0.697 H10 A1DC0 36 A1DC0 H11 H11 H 0 1 N N N N N N 15.777 -2.321 19.013 -3.093 0.340 -2.339 H11 A1DC0 37 A1DC0 H12 H12 H 0 1 N N N N N N 16.059 -4.638 15.700 -6.024 -2.332 -1.776 H12 A1DC0 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DC0 O21 C19 DOUB N N 1 A1DC0 CL23 C20 SING N N 2 A1DC0 C19 C20 SING N N 3 A1DC0 C19 N18 SING N N 4 A1DC0 C20 C14 DOUB N N 5 A1DC0 N18 C17 SING N N 6 A1DC0 CL26 C5 SING N N 7 A1DC0 C14 N16 SING N N 8 A1DC0 C14 C13 SING N N 9 A1DC0 C17 N16 SING N N 10 A1DC0 C17 O22 DOUB N N 11 A1DC0 O15 C13 DOUB N N 12 A1DC0 C13 N10 SING N N 13 A1DC0 C6 C5 DOUB Y N 14 A1DC0 C6 C1 SING Y N 15 A1DC0 C8 C9 SING N N 16 A1DC0 C8 N7 SING N N 17 A1DC0 C5 C4 SING Y N 18 A1DC0 C9 N10 SING N N 19 A1DC0 N10 C11 SING N N 20 A1DC0 C12 N7 SING N N 21 A1DC0 C12 C11 SING N N 22 A1DC0 N7 C1 SING N N 23 A1DC0 C1 C2 DOUB Y N 24 A1DC0 C4 CL25 SING N N 25 A1DC0 C4 C3 DOUB Y N 26 A1DC0 C2 C3 SING Y N 27 A1DC0 C3 CL24 SING N N 28 A1DC0 C2 H1 SING N N 29 A1DC0 C6 H2 SING N N 30 A1DC0 C8 H3 SING N N 31 A1DC0 C8 H4 SING N N 32 A1DC0 C9 H5 SING N N 33 A1DC0 C9 H6 SING N N 34 A1DC0 C11 H7 SING N N 35 A1DC0 C11 H8 SING N N 36 A1DC0 C12 H9 SING N N 37 A1DC0 C12 H10 SING N N 38 A1DC0 N16 H11 SING N N 39 A1DC0 N18 H12 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DC0 SMILES ACDLabs 14.52 "O=C(C=1NC(=O)NC(=O)C=1Cl)N1CCN(CC1)c1cc(Cl)c(Cl)c(Cl)c1" A1DC0 InChI InChI 1.06 "InChI=1S/C15H12Cl4N4O3/c16-8-5-7(6-9(17)10(8)18)22-1-3-23(4-2-22)14(25)12-11(19)13(24)21-15(26)20-12/h5-6H,1-4H2,(H2,20,21,24,26)" A1DC0 InChIKey InChI 1.06 KJMZRXOGFSSDEG-UHFFFAOYSA-N A1DC0 SMILES_CANONICAL CACTVS 3.385 "Clc1cc(cc(Cl)c1Cl)N2CCN(CC2)C(=O)C3=C(Cl)C(=O)NC(=O)N3" A1DC0 SMILES CACTVS 3.385 "Clc1cc(cc(Cl)c1Cl)N2CCN(CC2)C(=O)C3=C(Cl)C(=O)NC(=O)N3" A1DC0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(cc(c(c1Cl)Cl)Cl)N2CCN(CC2)C(=O)C3=C(C(=O)NC(=O)N3)Cl" A1DC0 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(cc(c(c1Cl)Cl)Cl)N2CCN(CC2)C(=O)C3=C(C(=O)NC(=O)N3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DC0 "SYSTEMATIC NAME" ACDLabs 14.52 "5-chloro-6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" A1DC0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-chloranyl-6-[4-[3,4,5-tris(chloranyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DC0 "Create component" 2026-04-20 RCSB A1DC0 "Initial release" 2026-09-09 RCSB #