data_A1DC1 # _chem_comp.id A1DC1 _chem_comp.name "5-methyl-6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 Cl3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-20 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 417.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DC1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12TA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DC1 C8 C1 C 0 1 N N N N N N 16.206 -3.778 17.339 -4.908 -1.804 1.000 C8 A1DC1 1 A1DC1 C4 C2 C 0 1 N N N N N N 14.824 -1.762 17.306 -4.105 0.352 0.427 C4 A1DC1 2 A1DC1 C5 C3 C 0 1 N N N N N N 14.465 -1.928 16.008 -5.000 0.424 -0.593 C5 A1DC1 3 A1DC1 C2 C4 C 0 1 N N N N N N 14.370 -0.615 18.198 -3.172 1.476 0.686 C2 A1DC1 4 A1DC1 N1 N1 N 0 1 N N N N N N 13.279 -0.773 18.972 -1.985 1.527 0.049 N1 A1DC1 5 A1DC1 C6 C5 C 0 1 N N N N N N 14.996 -3.079 15.284 -5.906 -0.710 -0.808 C6 A1DC1 6 A1DC1 C12 C6 C 0 1 N N N N N N 12.799 0.344 19.804 -1.001 2.571 0.371 C12 A1DC1 7 A1DC1 C13 C7 C 0 1 N N N N N N 11.361 0.737 19.461 0.348 1.900 0.649 C13 A1DC1 8 A1DC1 C15 C8 C 0 1 N N N N N N 10.975 -1.466 18.512 -0.262 -0.051 -0.647 C15 A1DC1 9 A1DC1 C16 C9 C 0 1 N N N N N N 12.365 -1.920 18.939 -1.638 0.536 -0.981 C16 A1DC1 10 A1DC1 C17 C10 C 0 1 Y N N N N N 9.095 -0.189 19.419 2.002 0.538 -0.343 C17 A1DC1 11 A1DC1 C18 C11 C 0 1 Y N N N N N 8.224 -0.806 18.499 2.226 -0.833 -0.371 C18 A1DC1 12 A1DC1 C19 C12 C 0 1 Y N N N N N 6.856 -0.533 18.532 3.510 -1.325 -0.230 C19 A1DC1 13 A1DC1 C20 C13 C 0 1 Y N N N N N 6.302 0.350 19.466 4.572 -0.453 -0.060 C20 A1DC1 14 A1DC1 C21 C14 C 0 1 Y N N N N N 7.181 0.954 20.370 4.351 0.914 -0.031 C21 A1DC1 15 A1DC1 C22 C15 C 0 1 Y N N N N N 8.541 0.700 20.358 3.069 1.411 -0.178 C22 A1DC1 16 A1DC1 C26 C16 C 0 1 N N N N N N 13.568 -1.013 15.244 -5.063 1.643 -1.478 C26 A1DC1 17 A1DC1 N14 N2 N 0 1 N N N N N N 10.473 -0.438 19.430 0.705 1.038 -0.486 N14 A1DC1 18 A1DC1 N7 N3 N 0 1 N N N N N N 15.844 -3.931 16.009 -5.816 -1.780 0.008 N7 A1DC1 19 A1DC1 N9 N4 N 0 1 N N N N N N 15.661 -2.662 17.943 -4.072 -0.776 1.219 N9 A1DC1 20 A1DC1 O10 O1 O 0 1 N N N N N N 16.947 -4.559 17.931 -4.847 -2.780 1.722 O10 A1DC1 21 A1DC1 O11 O2 O 0 1 N N N N N N 14.730 -3.316 14.106 -6.723 -0.686 -1.710 O11 A1DC1 22 A1DC1 O3 O3 O 0 1 N N N N N N 15.040 0.430 18.147 -3.479 2.350 1.472 O3 A1DC1 23 A1DC1 CL23 CL1 CL 0 0 N N N N N N 6.556 2.073 21.569 5.685 2.004 0.182 CL23 A1DC1 24 A1DC1 CL24 CL2 CL 0 0 N N N N N N 4.598 0.706 19.519 6.184 -1.074 0.118 CL24 A1DC1 25 A1DC1 CL25 CL3 CL 0 0 N N N N N N 5.831 -1.332 17.350 3.791 -3.037 -0.265 CL25 A1DC1 26 A1DC1 H2 H2 H 0 1 N N N N N N 12.843 0.044 20.861 -0.903 3.254 -0.473 H2 A1DC1 27 A1DC1 H3 H3 H 0 1 N N N N N N 13.453 1.214 19.643 -1.327 3.123 1.253 H3 A1DC1 28 A1DC1 H4 H4 H 0 1 N N N N N N 11.349 1.221 18.473 1.114 2.663 0.780 H4 A1DC1 29 A1DC1 H5 H5 H 0 1 N N N N N N 10.993 1.443 20.220 0.275 1.298 1.554 H5 A1DC1 30 A1DC1 H6 H6 H 0 1 N N N N N N 11.025 -1.051 17.494 -0.326 -0.622 0.279 H6 A1DC1 31 A1DC1 H7 H7 H 0 1 N N N N N N 10.292 -2.328 18.523 0.060 -0.705 -1.457 H7 A1DC1 32 A1DC1 H8 H8 H 0 1 N N N N N N 12.309 -2.370 19.941 -2.383 -0.259 -0.988 H8 A1DC1 33 A1DC1 H9 H9 H 0 1 N N N N N N 12.741 -2.665 18.222 -1.603 1.019 -1.958 H9 A1DC1 34 A1DC1 H10 H10 H 0 1 N N N N N N 8.617 -1.494 17.765 1.398 -1.513 -0.504 H10 A1DC1 35 A1DC1 H11 H11 H 0 1 N N N N N N 9.183 1.189 21.076 2.898 2.477 -0.160 H11 A1DC1 36 A1DC1 H12 H12 H 0 1 N N N N N N 13.238 -0.192 15.898 -4.453 1.479 -2.366 H12 A1DC1 37 A1DC1 H13 H13 H 0 1 N N N N N N 14.114 -0.599 14.383 -6.097 1.822 -1.775 H13 A1DC1 38 A1DC1 H14 H14 H 0 1 N N N N N N 12.691 -1.573 14.887 -4.687 2.508 -0.933 H14 A1DC1 39 A1DC1 H15 H15 H 0 1 N N N N N N 16.221 -4.719 15.523 -6.408 -2.536 -0.121 H15 A1DC1 40 A1DC1 H1 H1 H 0 1 N N N N N N 15.886 -2.493 18.903 -3.433 -0.828 1.946 H1 A1DC1 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DC1 O11 C6 DOUB N N 1 A1DC1 C26 C5 SING N N 2 A1DC1 C6 C5 SING N N 3 A1DC1 C6 N7 SING N N 4 A1DC1 C5 C4 DOUB N N 5 A1DC1 N7 C8 SING N N 6 A1DC1 C4 N9 SING N N 7 A1DC1 C4 C2 SING N N 8 A1DC1 C8 O10 DOUB N N 9 A1DC1 C8 N9 SING N N 10 A1DC1 CL25 C19 SING N N 11 A1DC1 O3 C2 DOUB N N 12 A1DC1 C2 N1 SING N N 13 A1DC1 C18 C19 DOUB Y N 14 A1DC1 C18 C17 SING Y N 15 A1DC1 C15 C16 SING N N 16 A1DC1 C15 N14 SING N N 17 A1DC1 C19 C20 SING Y N 18 A1DC1 C16 N1 SING N N 19 A1DC1 N1 C12 SING N N 20 A1DC1 C17 N14 SING N N 21 A1DC1 C17 C22 DOUB Y N 22 A1DC1 N14 C13 SING N N 23 A1DC1 C13 C12 SING N N 24 A1DC1 C20 CL24 SING N N 25 A1DC1 C20 C21 DOUB Y N 26 A1DC1 C22 C21 SING Y N 27 A1DC1 C21 CL23 SING N N 28 A1DC1 C12 H2 SING N N 29 A1DC1 C12 H3 SING N N 30 A1DC1 C13 H4 SING N N 31 A1DC1 C13 H5 SING N N 32 A1DC1 C15 H6 SING N N 33 A1DC1 C15 H7 SING N N 34 A1DC1 C16 H8 SING N N 35 A1DC1 C16 H9 SING N N 36 A1DC1 C18 H10 SING N N 37 A1DC1 C22 H11 SING N N 38 A1DC1 C26 H12 SING N N 39 A1DC1 C26 H13 SING N N 40 A1DC1 C26 H14 SING N N 41 A1DC1 N7 H15 SING N N 42 A1DC1 N9 H1 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DC1 SMILES ACDLabs 14.52 "O=C(C=1NC(=O)NC(=O)C=1C)N1CCN(CC1)c1cc(Cl)c(Cl)c(Cl)c1" A1DC1 InChI InChI 1.06 "InChI=1S/C16H15Cl3N4O3/c1-8-13(20-16(26)21-14(8)24)15(25)23-4-2-22(3-5-23)9-6-10(17)12(19)11(18)7-9/h6-7H,2-5H2,1H3,(H2,20,21,24,26)" A1DC1 InChIKey InChI 1.06 IWWWIHTYOGEXPL-UHFFFAOYSA-N A1DC1 SMILES_CANONICAL CACTVS 3.385 "CC1=C(NC(=O)NC1=O)C(=O)N2CCN(CC2)c3cc(Cl)c(Cl)c(Cl)c3" A1DC1 SMILES CACTVS 3.385 "CC1=C(NC(=O)NC1=O)C(=O)N2CCN(CC2)c3cc(Cl)c(Cl)c(Cl)c3" A1DC1 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1=C(NC(=O)NC1=O)C(=O)N2CCN(CC2)c3cc(c(c(c3)Cl)Cl)Cl" A1DC1 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1=C(NC(=O)NC1=O)C(=O)N2CCN(CC2)c3cc(c(c(c3)Cl)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DC1 "SYSTEMATIC NAME" ACDLabs 14.52 "5-methyl-6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" A1DC1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-methyl-6-[4-[3,4,5-tris(chloranyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DC1 "Create component" 2026-04-20 RCSB A1DC1 "Modify name" 2026-04-21 RCSB A1DC1 "Initial release" 2026-09-09 RCSB #