data_A1DEK # _chem_comp.id A1DEK _chem_comp.name "N-{4,5-dichloro-2-[4-(2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]phenyl}cyclopropanesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 Cl2 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-23 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DEK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12YF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DEK C4 C1 C 0 1 N N N N N N 14.775 -1.634 17.164 -4.790 0.003 -0.497 C4 A1DEK 1 A1DEK C5 C2 C 0 1 N N N N N N 14.460 -1.870 15.865 -5.430 -1.143 -0.145 C5 A1DEK 2 A1DEK C6 C3 C 0 1 N N N N N N 14.929 -3.079 15.218 -6.328 -1.113 1.015 C6 A1DEK 3 A1DEK C8 C4 C 0 1 N N N N N N 16.031 -3.705 17.357 -5.829 1.153 1.297 C8 A1DEK 4 A1DEK C13 C5 C 0 1 N N N N N N 11.359 0.817 19.507 -0.416 0.614 -2.161 C13 A1DEK 5 A1DEK C18 C6 C 0 1 Y N N N N N 8.420 0.158 20.649 2.527 -0.131 -0.604 C18 A1DEK 6 A1DEK C19 C7 C 0 1 Y N N N N N 7.039 0.351 20.676 3.721 0.477 -0.248 C19 A1DEK 7 A1DEK C20 C8 C 0 1 Y N N N N N 6.282 0.222 19.514 3.734 1.805 0.138 C20 A1DEK 8 A1DEK C22 C9 C 0 1 Y N N N N N 8.290 -0.296 18.279 1.361 1.934 -0.195 C22 A1DEK 9 A1DEK C28 C10 C 0 1 N N N N N N 9.789 3.015 22.040 3.097 -2.505 1.482 C28 A1DEK 10 A1DEK C30 C11 C 0 1 N N N N N N 9.051 3.482 20.807 2.430 -3.745 2.080 C30 A1DEK 11 A1DEK C12 C12 C 0 1 N N N N N N 12.851 0.522 19.755 -1.633 -0.189 -2.633 C12 A1DEK 12 A1DEK C15 C13 C 0 1 N N N N N N 11.026 -1.382 18.520 -0.836 0.037 0.157 C15 A1DEK 13 A1DEK C16 C14 C 0 1 N N N N N N 12.485 -1.729 18.831 -2.070 -0.789 -0.220 C16 A1DEK 14 A1DEK C17 C15 C 0 1 Y N N N N N 9.075 -0.174 19.430 1.341 0.602 -0.577 C17 A1DEK 15 A1DEK C2 C16 C 0 1 N N N N N N 14.359 -0.422 17.964 -3.877 0.022 -1.666 C2 A1DEK 16 A1DEK C21 C17 C 0 1 Y N N N N N 6.909 -0.102 18.310 2.555 2.531 0.169 C21 A1DEK 17 A1DEK C31 C18 C 0 1 N N N N N N 8.999 4.301 22.063 3.880 -3.410 2.435 C31 A1DEK 18 A1DEK N1 N1 N 0 1 N N N N N N 13.319 -0.518 18.824 -2.579 -0.306 -1.512 N1 A1DEK 19 A1DEK N14 N2 N 0 1 N N N N N N 10.482 -0.362 19.444 0.133 -0.004 -0.946 N14 A1DEK 20 A1DEK N25 N3 N 0 1 N N N N N N 9.204 0.284 21.822 2.513 -1.476 -0.994 N25 A1DEK 21 A1DEK N7 N4 N 0 1 N N N N N N 15.693 -3.915 16.036 -6.485 0.047 1.687 N7 A1DEK 22 A1DEK N9 N5 N 0 1 N N N N N N 15.537 -2.528 17.879 -5.001 1.149 0.239 N9 A1DEK 23 A1DEK O10 O1 O 0 1 N N N N N N 16.710 -4.492 18.012 -5.988 2.186 1.919 O10 A1DEK 24 A1DEK O11 O2 O 0 1 N N N N N N 14.702 -3.392 14.046 -6.922 -2.116 1.364 O11 A1DEK 25 A1DEK O27 O3 O 0 1 N N N N N N 7.769 1.762 23.215 4.832 -2.003 -0.482 O27 A1DEK 26 A1DEK O29 O4 O 0 1 N N N N N N 10.135 1.269 23.989 3.182 -3.811 -0.844 O29 A1DEK 27 A1DEK O3 O5 O 0 1 N N N N N N 15.014 0.617 17.781 -4.300 0.332 -2.762 O3 A1DEK 28 A1DEK S26 S1 S 0 1 N N N N N N 9.196 1.577 22.899 3.540 -2.558 -0.277 S26 A1DEK 29 A1DEK CL23 CL1 CL 0 0 N N N N N N 6.003 -0.276 16.818 2.579 4.200 0.648 CL23 A1DEK 30 A1DEK CL24 CL2 CL 0 0 N N N N N N 4.550 0.477 19.611 5.230 2.564 0.584 CL24 A1DEK 31 A1DEK H1 H1 H 0 1 N N N N N N 13.862 -1.159 15.315 -5.281 -2.054 -0.706 H1 A1DEK 32 A1DEK H2 H2 H 0 1 N N N N N N 11.274 1.354 18.551 0.343 0.616 -2.943 H2 A1DEK 33 A1DEK H3 H3 H 0 1 N N N N N N 11.001 1.462 20.323 -0.718 1.638 -1.944 H3 A1DEK 34 A1DEK H4 H4 H 0 1 N N N N N N 6.552 0.603 21.607 4.642 -0.087 -0.271 H4 A1DEK 35 A1DEK H5 H5 H 0 1 N N N N N N 8.765 -0.547 17.342 0.444 2.503 -0.169 H5 A1DEK 36 A1DEK H6 H6 H 0 1 N N N N N N 10.886 3.093 22.035 2.781 -1.532 1.858 H6 A1DEK 37 A1DEK H7 H7 H 0 1 N N N N N N 9.614 3.848 19.935 1.674 -3.589 2.849 H7 A1DEK 38 A1DEK H8 H8 H 0 1 N N N N N N 8.155 2.942 20.465 2.258 -4.593 1.416 H8 A1DEK 39 A1DEK H9 H9 H 0 1 N N N N N N 12.987 0.173 20.789 -2.113 0.328 -3.464 H9 A1DEK 40 A1DEK H10 H10 H 0 1 N N N N N N 13.435 1.441 19.599 -1.316 -1.181 -2.952 H10 A1DEK 41 A1DEK H11 H11 H 0 1 N N N N N N 10.966 -0.996 17.492 -1.132 1.070 0.343 H11 A1DEK 42 A1DEK H12 H12 H 0 1 N N N N N N 10.419 -2.296 18.605 -0.381 -0.378 1.056 H12 A1DEK 43 A1DEK H13 H13 H 0 1 N N N N N N 12.541 -2.200 19.823 -1.795 -1.840 -0.304 H13 A1DEK 44 A1DEK H14 H14 H 0 1 N N N N N N 12.860 -2.430 18.071 -2.837 -0.672 0.546 H14 A1DEK 45 A1DEK H15 H15 H 0 1 N N N N N N 9.523 5.267 22.111 4.661 -4.038 2.006 H15 A1DEK 46 A1DEK H16 H16 H 0 1 N N N N N N 8.065 4.362 22.641 4.078 -3.033 3.438 H16 A1DEK 47 A1DEK H17 H17 H 0 1 N N N N N N 8.973 -0.516 22.376 1.901 -1.774 -1.686 H17 A1DEK 48 A1DEK H18 H18 H 0 1 N N N N N N 16.032 -4.758 15.618 -7.076 0.082 2.455 H18 A1DEK 49 A1DEK H19 H19 H 0 1 N N N N N N 15.745 -2.312 18.833 -4.547 1.968 -0.014 H19 A1DEK 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DEK O11 C6 DOUB N N 1 A1DEK C6 C5 SING N N 2 A1DEK C6 N7 SING N N 3 A1DEK C5 C4 DOUB N N 4 A1DEK N7 C8 SING N N 5 A1DEK CL23 C21 SING N N 6 A1DEK C4 N9 SING N N 7 A1DEK C4 C2 SING N N 8 A1DEK C8 N9 SING N N 9 A1DEK C8 O10 DOUB N N 10 A1DEK O3 C2 DOUB N N 11 A1DEK C2 N1 SING N N 12 A1DEK C22 C21 DOUB Y N 13 A1DEK C22 C17 SING Y N 14 A1DEK C21 C20 SING Y N 15 A1DEK C15 C16 SING N N 16 A1DEK C15 N14 SING N N 17 A1DEK N1 C16 SING N N 18 A1DEK N1 C12 SING N N 19 A1DEK C17 N14 SING N N 20 A1DEK C17 C18 DOUB Y N 21 A1DEK N14 C13 SING N N 22 A1DEK C13 C12 SING N N 23 A1DEK C20 CL24 SING N N 24 A1DEK C20 C19 DOUB Y N 25 A1DEK C18 C19 SING Y N 26 A1DEK C18 N25 SING N N 27 A1DEK C30 C28 SING N N 28 A1DEK C30 C31 SING N N 29 A1DEK N25 S26 SING N N 30 A1DEK C28 C31 SING N N 31 A1DEK C28 S26 SING N N 32 A1DEK S26 O27 DOUB N N 33 A1DEK S26 O29 DOUB N N 34 A1DEK C5 H1 SING N N 35 A1DEK C13 H2 SING N N 36 A1DEK C13 H3 SING N N 37 A1DEK C19 H4 SING N N 38 A1DEK C22 H5 SING N N 39 A1DEK C28 H6 SING N N 40 A1DEK C30 H7 SING N N 41 A1DEK C30 H8 SING N N 42 A1DEK C12 H9 SING N N 43 A1DEK C12 H10 SING N N 44 A1DEK C15 H11 SING N N 45 A1DEK C15 H12 SING N N 46 A1DEK C16 H13 SING N N 47 A1DEK C16 H14 SING N N 48 A1DEK C31 H15 SING N N 49 A1DEK C31 H16 SING N N 50 A1DEK N25 H17 SING N N 51 A1DEK N7 H18 SING N N 52 A1DEK N9 H19 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DEK SMILES ACDLabs 14.52 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(Cl)cc1NS(=O)(=O)C1CC1" A1DEK InChI InChI 1.06 "InChI=1S/C18H19Cl2N5O5S/c19-11-7-13(23-31(29,30)10-1-2-10)15(8-12(11)20)24-3-5-25(6-4-24)17(27)14-9-16(26)22-18(28)21-14/h7-10,23H,1-6H2,(H2,21,22,26,28)" A1DEK InChIKey InChI 1.06 GXYDCPCKLJLBRK-UHFFFAOYSA-N A1DEK SMILES_CANONICAL CACTVS 3.385 "Clc1cc(N[S](=O)(=O)C2CC2)c(cc1Cl)N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4" A1DEK SMILES CACTVS 3.385 "Clc1cc(N[S](=O)(=O)C2CC2)c(cc1Cl)N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4" A1DEK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)NS(=O)(=O)C4CC4" A1DEK SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)NS(=O)(=O)C4CC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DEK "SYSTEMATIC NAME" ACDLabs 14.52 "N-{4,5-dichloro-2-[4-(2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]phenyl}cyclopropanesulfonamide" A1DEK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[4-[[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-6-yl]carbonyl]piperazin-1-yl]-4,5-bis(chloranyl)phenyl]cyclopropanesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DEK "Create component" 2026-04-23 RCSB A1DEK "Initial release" 2026-09-09 RCSB #