data_A1DEM # _chem_comp.id A1DEM _chem_comp.name "(4P)-5-ethynyl-6-fluoro-4-(8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-4-{(1R,5S)-8-[(1-methyl-1H-imidazol-4-yl)methyl]-3,8-diazabicyclo[3.2.1]octan-3-yl}pyrido[4,3-d]pyrimidin-7-yl)naphthalen-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H37 F3 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-23 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 694.748 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12XE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DEM C02 C1 C 0 1 Y N N N N N -21.230 4.741 23.721 2.768 -0.262 -0.620 C02 A1DEM 1 A1DEM C03 C2 C 0 1 Y N N N N N -22.618 4.817 23.364 1.376 -0.081 -0.634 C03 A1DEM 2 A1DEM C05 C3 C 0 1 Y N N N N N -24.452 6.004 22.465 -0.786 -0.860 -0.474 C05 A1DEM 3 A1DEM C07 C4 C 0 1 N N N N N N -26.378 7.261 22.003 -1.037 -3.186 -0.074 C07 A1DEM 4 A1DEM C08 C5 C 0 1 N N S N N N -26.686 8.739 21.713 -2.138 -4.230 0.117 C08 A1DEM 5 A1DEM C09 C6 C 0 1 N N N N N N -28.318 8.931 21.440 -3.032 -4.321 -1.136 C09 A1DEM 6 A1DEM C10 C7 C 0 1 N N N N N N -28.871 9.098 22.704 -2.457 -5.551 -1.887 C10 A1DEM 7 A1DEM C11 C8 C 0 1 N N N N N N -27.699 9.883 23.599 -2.066 -6.480 -0.711 C11 A1DEM 8 A1DEM C13 C9 C 0 1 N N N N N N -25.085 10.441 22.353 -1.993 -6.053 1.668 C13 A1DEM 9 A1DEM C14 C10 C 0 1 N N R N N N -25.339 10.600 21.120 -3.299 -5.289 1.963 C14 A1DEM 10 A1DEM C16 C11 C 0 1 N N N N N N -25.948 9.212 20.641 -3.002 -3.895 1.350 C16 A1DEM 11 A1DEM C18 C12 C 0 1 Y N N N N N -24.780 3.859 23.313 -0.532 1.410 -0.865 C18 A1DEM 12 A1DEM C20 C13 C 0 1 N N N N N N -25.376 1.232 23.104 -1.860 3.088 0.100 C20 A1DEM 13 A1DEM C21 C14 C 0 1 N N S N N N -26.334 0.781 21.993 -3.119 2.213 0.214 C21 A1DEM 14 A1DEM C23 C15 C 0 1 N N N N N N -28.403 0.179 21.570 -5.269 1.860 -0.880 C23 A1DEM 15 A1DEM C24 C16 C 0 1 Y N N N N N -29.870 0.116 22.082 -6.122 2.693 0.043 C24 A1DEM 16 A1DEM C25 C17 C 0 1 Y N N N N N -30.433 -0.857 22.889 -6.992 3.650 -0.333 C25 A1DEM 17 A1DEM C27 C18 C 0 1 N N N N N N -32.673 -1.297 23.877 -8.555 5.211 0.899 C27 A1DEM 18 A1DEM C28 C19 C 0 1 Y N N N N N -31.968 0.603 22.409 -7.001 3.480 1.849 C28 A1DEM 19 A1DEM C30 C20 C 0 1 N N R N N N -27.899 2.236 22.367 -3.149 1.820 -2.082 C30 A1DEM 20 A1DEM C31 C21 C 0 1 N N N N N N -27.289 2.693 21.135 -2.700 0.477 -1.460 C31 A1DEM 21 A1DEM C32 C22 C 0 1 N N N N N N -26.230 1.869 20.733 -2.680 0.737 0.061 C32 A1DEM 22 A1DEM C33 C23 C 0 1 N N N N N N -27.236 2.978 23.560 -1.891 2.678 -2.297 C33 A1DEM 23 A1DEM C34 C24 C 0 1 Y N N N N N -23.406 3.763 23.635 0.872 1.228 -0.851 C34 A1DEM 24 A1DEM C35 C25 C 0 1 Y N N N N N -22.854 2.608 24.278 1.770 2.282 -1.041 C35 A1DEM 25 A1DEM C37 C26 C 0 1 Y N N N N N -20.742 3.555 24.306 3.580 0.846 -0.813 C37 A1DEM 26 A1DEM C38 C27 C 0 1 Y N N N N N -19.254 3.670 24.691 5.051 0.679 -0.796 C38 A1DEM 27 A1DEM C39 C28 C 0 1 Y N N N N N -18.183 3.756 23.782 5.773 0.851 0.405 C39 A1DEM 28 A1DEM C40 C29 C 0 1 Y N N N N N -18.348 3.557 22.381 5.114 1.186 1.611 C40 A1DEM 29 A1DEM C41 C30 C 0 1 N N N N N N -19.666 3.273 21.664 3.692 1.356 1.636 C41 A1DEM 30 A1DEM C42 C31 C 0 1 N N N N N N -20.707 3.067 21.140 2.527 1.495 1.656 C42 A1DEM 31 A1DEM C43 C32 C 0 1 Y N N N N N -17.243 3.635 21.556 5.860 1.346 2.772 C43 A1DEM 32 A1DEM C45 C33 C 0 1 Y N N N N N -15.959 3.880 22.049 7.242 1.181 2.753 C45 A1DEM 33 A1DEM C46 C34 C 0 1 Y N N N N N -15.780 4.059 23.413 7.897 0.860 1.603 C46 A1DEM 34 A1DEM C47 C35 C 0 1 Y N N N N N -16.905 3.995 24.278 7.178 0.688 0.405 C47 A1DEM 35 A1DEM C48 C36 C 0 1 Y N N N N N -16.675 4.170 25.684 7.837 0.356 -0.791 C48 A1DEM 36 A1DEM C49 C37 C 0 1 Y N N N N N -17.764 4.108 26.547 7.114 0.192 -1.951 C49 A1DEM 37 A1DEM C51 C38 C 0 1 Y N N N N N -19.054 3.879 26.058 5.728 0.345 -1.957 C51 A1DEM 38 A1DEM F01 F1 F 0 1 N N N N N N -20.447 5.821 23.378 3.304 -1.486 -0.417 F01 A1DEM 39 A1DEM F15 F2 F 0 1 N N N N N N -26.355 11.621 20.982 -4.384 -5.879 1.307 F15 A1DEM 40 A1DEM F44 F3 F 0 1 N N N N N N -17.407 3.449 20.220 5.240 1.666 3.928 F44 A1DEM 41 A1DEM N04 N1 N 0 1 Y N N N N N -23.112 5.957 22.769 0.513 -1.087 -0.452 N04 A1DEM 42 A1DEM N12 N2 N 0 1 N N N N N N -26.341 9.575 22.865 -1.558 -5.572 0.339 N12 A1DEM 43 A1DEM N17 N3 N 0 1 Y N N N N N -25.284 4.942 22.728 -1.303 0.347 -0.674 N17 A1DEM 44 A1DEM N19 N4 N 0 1 N N N N N N -25.740 2.739 23.444 -1.082 2.656 -1.071 N19 A1DEM 45 A1DEM N22 N5 N 0 1 N N N N N N -27.562 0.931 22.346 -3.939 2.472 -1.002 N22 A1DEM 46 A1DEM N26 N6 N 0 1 Y N N N N N -31.702 -0.544 23.082 -7.550 4.149 0.813 N26 A1DEM 47 A1DEM N29 N7 N 0 1 Y N N N N N -30.827 0.998 21.797 -6.152 2.607 1.381 N29 A1DEM 48 A1DEM N36 N8 N 0 1 Y N N N N N -21.550 2.537 24.618 3.064 2.059 -1.018 N36 A1DEM 49 A1DEM O06 O1 O 0 1 N N N N N N -24.988 7.155 21.873 -1.629 -1.903 -0.286 O06 A1DEM 50 A1DEM O50 O2 O 0 1 N N N N N N -17.617 4.261 27.935 7.758 -0.129 -3.104 O50 A1DEM 51 A1DEM H1 H1 H 0 1 N N N N N N -26.886 6.609 21.277 -0.408 -3.153 0.815 H1 A1DEM 52 A1DEM H2 H2 H 0 1 N N N N N N -26.694 6.992 23.022 -0.430 -3.453 -0.939 H2 A1DEM 53 A1DEM H3 H3 H 0 1 N N N N N N -28.505 9.817 20.815 -4.072 -4.491 -0.857 H3 A1DEM 54 A1DEM H4 H4 H 0 1 N N N N N N -28.736 8.040 20.948 -2.940 -3.419 -1.741 H4 A1DEM 55 A1DEM H5 H5 H 0 1 N N N N N N -29.785 9.708 22.647 -3.217 -6.015 -2.515 H5 A1DEM 56 A1DEM H6 H6 H 0 1 N N N N N N -29.109 8.122 23.152 -1.582 -5.275 -2.475 H6 A1DEM 57 A1DEM H7 H7 H 0 1 N N N N N N -27.890 10.966 23.618 -2.940 -7.024 -0.352 H7 A1DEM 58 A1DEM H8 H8 H 0 1 N N N N N N -27.677 9.496 24.629 -1.288 -7.177 -1.021 H8 A1DEM 59 A1DEM H10 H9 H 0 1 N N N N N N -25.031 11.408 22.875 -1.251 -5.801 2.425 H10 A1DEM 60 A1DEM H11 H10 H 0 1 N N N N N N -24.141 9.894 22.496 -2.162 -7.129 1.646 H11 A1DEM 61 A1DEM H12 H11 H 0 1 N N N N N N -24.457 10.836 20.506 -3.481 -5.227 3.036 H12 A1DEM 62 A1DEM H13 H12 H 0 1 N N N N N N -26.596 9.359 19.764 -2.446 -3.276 2.053 H13 A1DEM 63 A1DEM H14 H13 H 0 1 N N N N N N -25.143 8.506 20.388 -3.927 -3.403 1.049 H14 A1DEM 64 A1DEM H15 H14 H 0 1 N N N N N N -24.335 1.164 22.756 -2.150 4.131 -0.021 H15 A1DEM 65 A1DEM H16 H15 H 0 1 N N N N N N -25.507 0.601 23.995 -1.255 2.979 1.000 H16 A1DEM 66 A1DEM H17 H16 H 0 1 N N N N N N -26.069 -0.222 21.628 -3.664 2.391 1.141 H17 A1DEM 67 A1DEM H19 H17 H 0 1 N N N N N N -28.009 -0.847 21.531 -5.170 0.854 -0.473 H19 A1DEM 68 A1DEM H20 H18 H 0 1 N N N N N N -28.411 0.608 20.557 -5.738 1.811 -1.862 H20 A1DEM 69 A1DEM H21 H19 H 0 1 N N N N N N -29.924 -1.721 23.291 -7.208 3.962 -1.344 H21 A1DEM 70 A1DEM H22 H20 H 0 1 N N N N N N -33.647 -0.786 23.848 -8.057 6.178 0.978 H22 A1DEM 71 A1DEM H23 H21 H 0 1 N N N N N N -32.779 -2.310 23.463 -9.178 5.195 0.004 H23 A1DEM 72 A1DEM H24 H22 H 0 1 N N N N N N -32.323 -1.361 24.918 -9.179 5.051 1.778 H24 A1DEM 73 A1DEM H25 H23 H 0 1 N N N N N N -32.920 1.111 22.369 -7.229 3.639 2.893 H25 A1DEM 74 A1DEM H26 H24 H 0 1 N N N N N N -28.986 2.407 22.371 -3.728 1.682 -2.995 H26 A1DEM 75 A1DEM H27 H25 H 0 1 N N N N N N -26.907 3.713 21.286 -3.413 -0.311 -1.701 H27 A1DEM 76 A1DEM H28 H26 H 0 1 N N N N N N -28.052 2.701 20.343 -1.705 0.209 -1.814 H28 A1DEM 77 A1DEM H29 H27 H 0 1 N N N N N N -26.410 1.399 19.755 -1.674 0.598 0.457 H29 A1DEM 78 A1DEM H30 H28 H 0 1 N N N N N N -25.267 2.400 20.713 -3.384 0.077 0.568 H30 A1DEM 79 A1DEM H31 H29 H 0 1 N N N N N N -27.453 4.055 23.505 -1.310 2.272 -3.125 H31 A1DEM 80 A1DEM H32 H30 H 0 1 N N N N N N -27.612 2.576 24.513 -2.183 3.703 -2.525 H32 A1DEM 81 A1DEM H33 H31 H 0 1 N N N N N N -23.500 1.770 24.497 1.398 3.283 -1.207 H33 A1DEM 82 A1DEM H34 H32 H 0 1 N N N N N N -21.639 2.882 20.671 1.484 1.620 1.674 H34 A1DEM 83 A1DEM H35 H33 H 0 1 N N N N N N -15.116 3.929 21.376 7.805 1.311 3.666 H35 A1DEM 84 A1DEM H36 H34 H 0 1 N N N N N N -14.794 4.245 23.814 8.970 0.737 1.610 H36 A1DEM 85 A1DEM H37 H35 H 0 1 N N N N N N -15.679 4.346 26.063 8.910 0.231 -0.800 H37 A1DEM 86 A1DEM H39 H36 H 0 1 N N N N N N -19.895 3.864 26.736 5.178 0.208 -2.877 H39 A1DEM 87 A1DEM H38 H39 H 0 1 N N N N N N -18.467 4.188 28.354 7.846 -1.080 -3.254 H38 A1DEM 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DEM C02 F01 SING N N 1 A1DEM C03 C02 DOUB Y N 2 A1DEM C05 N04 DOUB Y N 3 A1DEM C07 O06 SING N N 4 A1DEM C08 C07 SING N N 5 A1DEM C09 C08 SING N N 6 A1DEM C10 C09 SING N N 7 A1DEM C11 C10 SING N N 8 A1DEM N12 C11 SING N N 9 A1DEM C13 N12 SING N N 10 A1DEM C14 C13 SING N N 11 A1DEM F15 C14 SING N N 12 A1DEM C16 C14 SING N N 13 A1DEM O06 C05 SING N N 14 A1DEM N17 C05 SING Y N 15 A1DEM C18 N17 DOUB Y N 16 A1DEM N19 C18 SING N N 17 A1DEM C20 N19 SING N N 18 A1DEM C21 C20 SING N N 19 A1DEM N22 C21 SING N N 20 A1DEM C24 C23 SING N N 21 A1DEM C25 C24 DOUB Y N 22 A1DEM N26 C25 SING Y N 23 A1DEM C27 N26 SING N N 24 A1DEM C28 N26 SING Y N 25 A1DEM N29 C28 DOUB Y N 26 A1DEM C23 N22 SING N N 27 A1DEM C30 N22 SING N N 28 A1DEM C32 C31 SING N N 29 A1DEM C31 C30 SING N N 30 A1DEM C33 C30 SING N N 31 A1DEM N04 C03 SING Y N 32 A1DEM C34 C03 SING Y N 33 A1DEM C35 C34 DOUB Y N 34 A1DEM N36 C35 SING Y N 35 A1DEM C37 N36 DOUB Y N 36 A1DEM C38 C37 SING N N 37 A1DEM C39 C38 DOUB Y N 38 A1DEM C42 C41 TRIP N N 39 A1DEM C41 C40 SING N N 40 A1DEM C43 C40 DOUB Y N 41 A1DEM F44 C43 SING N N 42 A1DEM C45 C43 SING Y N 43 A1DEM C46 C45 DOUB Y N 44 A1DEM C40 C39 SING Y N 45 A1DEM C47 C39 SING Y N 46 A1DEM C48 C47 DOUB Y N 47 A1DEM C49 C48 SING Y N 48 A1DEM O50 C49 SING N N 49 A1DEM C51 C49 DOUB Y N 50 A1DEM C02 C37 SING Y N 51 A1DEM C08 N12 SING N N 52 A1DEM C08 C16 SING N N 53 A1DEM C18 C34 SING Y N 54 A1DEM N19 C33 SING N N 55 A1DEM C21 C32 SING N N 56 A1DEM C24 N29 SING Y N 57 A1DEM C38 C51 SING Y N 58 A1DEM C46 C47 SING Y N 59 A1DEM C07 H1 SING N N 60 A1DEM C07 H2 SING N N 61 A1DEM C09 H3 SING N N 62 A1DEM C09 H4 SING N N 63 A1DEM C10 H5 SING N N 64 A1DEM C10 H6 SING N N 65 A1DEM C11 H7 SING N N 66 A1DEM C11 H8 SING N N 67 A1DEM C13 H10 SING N N 68 A1DEM C13 H11 SING N N 69 A1DEM C14 H12 SING N N 70 A1DEM C16 H13 SING N N 71 A1DEM C16 H14 SING N N 72 A1DEM C20 H15 SING N N 73 A1DEM C20 H16 SING N N 74 A1DEM C21 H17 SING N N 75 A1DEM C23 H19 SING N N 76 A1DEM C23 H20 SING N N 77 A1DEM C25 H21 SING N N 78 A1DEM C27 H22 SING N N 79 A1DEM C27 H23 SING N N 80 A1DEM C27 H24 SING N N 81 A1DEM C28 H25 SING N N 82 A1DEM C30 H26 SING N N 83 A1DEM C31 H27 SING N N 84 A1DEM C31 H28 SING N N 85 A1DEM C32 H29 SING N N 86 A1DEM C32 H30 SING N N 87 A1DEM C33 H31 SING N N 88 A1DEM C33 H32 SING N N 89 A1DEM C35 H33 SING N N 90 A1DEM C42 H34 SING N N 91 A1DEM C45 H35 SING N N 92 A1DEM C46 H36 SING N N 93 A1DEM C48 H37 SING N N 94 A1DEM C51 H39 SING N N 95 A1DEM O50 H38 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DEM SMILES ACDLabs 14.52 "FC1CC2(CCCN2C1)COc1nc2c(F)c(ncc2c(n1)N1CC2CCC(C1)N2Cc1cn(C)cn1)c1cc(O)cc2ccc(F)c(C#C)c21" A1DEM InChI InChI 1.06 "InChI=1S/C38H37F3N8O2/c1-3-28-31(40)8-5-22-11-27(50)12-29(32(22)28)34-33(41)35-30(14-42-34)36(45-37(44-35)51-20-38-9-4-10-48(38)15-23(39)13-38)47-18-25-6-7-26(19-47)49(25)17-24-16-46(2)21-43-24/h1,5,8,11-12,14,16,21,23,25-26,50H,4,6-7,9-10,13,15,17-20H2,2H3/t23-,25-,26+,38+/m1/s1" A1DEM InChIKey InChI 1.06 FIMBGNQQKKTACL-HUWNPGNESA-N A1DEM SMILES_CANONICAL CACTVS 3.385 "Cn1cnc(CN2[C@@H]3CC[C@H]2CN(C3)c4nc(OC[C@@]56CCCN5C[C@H](F)C6)nc7c(F)c(ncc47)c8cc(O)cc9ccc(F)c(C#C)c89)c1" A1DEM SMILES CACTVS 3.385 "Cn1cnc(CN2[CH]3CC[CH]2CN(C3)c4nc(OC[C]56CCCN5C[CH](F)C6)nc7c(F)c(ncc47)c8cc(O)cc9ccc(F)c(C#C)c89)c1" A1DEM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1cc(nc1)CN2[C@@H]3CC[C@H]2CN(C3)c4c5cnc(c(c5nc(n4)OC[C@@]67CCCN6C[C@@H](C7)F)F)c8cc(cc9c8c(c(cc9)F)C#C)O" A1DEM SMILES "OpenEye OEToolkits" 3.1.0.0 "Cn1cc(nc1)CN2C3CCC2CN(C3)c4c5cnc(c(c5nc(n4)OCC67CCCN6CC(C7)F)F)c8cc(cc9c8c(c(cc9)F)C#C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DEM "SYSTEMATIC NAME" ACDLabs 14.52 "(4P)-5-ethynyl-6-fluoro-4-(8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-4-{(1R,5S)-8-[(1-methyl-1H-imidazol-4-yl)methyl]-3,8-diazabicyclo[3.2.1]octan-3-yl}pyrido[4,3-d]pyrimidin-7-yl)naphthalen-2-ol" A1DEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-ethynyl-6-fluoranyl-4-[8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]-4-[(1~{R},5~{S})-8-[(1-methylimidazol-4-yl)methyl]-3,8-diazabicyclo[3.2.1]octan-3-yl]pyrido[4,3-d]pyrimidin-7-yl]naphthalen-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DEM "Create component" 2026-04-23 RCSB A1DEM "Initial release" 2026-08-26 RCSB #