data_A1DEX # _chem_comp.id A1DEX _chem_comp.name "N-{4,5-dichloro-2-[4-(2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]phenyl}cyclopropanecarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 Cl2 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-27 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DEX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12ZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DEX N1 N1 N 0 1 N N N N N N 13.231 -0.460 18.903 -2.282 -0.727 -1.060 N1 A1DEX 1 A1DEX C4 C1 C 0 1 N N N N N N 14.739 -1.494 17.254 -4.607 -0.189 -0.498 C4 A1DEX 2 A1DEX C5 C2 C 0 1 N N N N N N 14.469 -1.681 15.939 -5.295 -1.218 0.062 C5 A1DEX 3 A1DEX C6 C3 C 0 1 N N N N N N 14.962 -2.869 15.259 -6.355 -0.907 1.028 C6 A1DEX 4 A1DEX C8 C4 C 0 1 N N N N N N 15.971 -3.586 17.414 -5.896 1.367 0.742 C8 A1DEX 5 A1DEX C2 C5 C 0 1 N N N N N N 14.287 -0.309 18.085 -3.532 -0.455 -1.484 C2 A1DEX 6 A1DEX C12 C6 C 0 1 N N N N N N 12.361 -1.641 18.978 -1.936 -0.657 0.368 C12 A1DEX 7 A1DEX C13 C7 C 0 1 N N N N N N 10.949 -1.231 18.567 -0.683 0.211 0.523 C13 A1DEX 8 A1DEX C15 C8 C 0 1 N N N N N N 11.297 1.055 19.292 -0.003 -0.222 -1.764 C15 A1DEX 9 A1DEX C16 C9 C 0 1 N N N N N N 12.734 0.691 19.683 -1.228 -1.108 -2.013 C16 A1DEX 10 A1DEX C17 C10 C 0 1 Y N N N N N 9.020 0.084 19.363 1.589 0.356 -0.115 C17 A1DEX 11 A1DEX C18 C11 C 0 1 Y N N N N N 8.409 0.785 20.445 2.710 -0.360 0.306 C18 A1DEX 12 A1DEX C19 C12 C 0 1 Y N N N N N 7.033 0.984 20.458 3.907 0.302 0.531 C19 A1DEX 13 A1DEX C20 C13 C 0 1 Y N N N N N 6.233 0.489 19.436 3.988 1.669 0.338 C20 A1DEX 14 A1DEX C21 C14 C 0 1 Y N N N N N 6.810 -0.204 18.379 2.876 2.381 -0.080 C21 A1DEX 15 A1DEX C22 C15 C 0 1 Y N N N N N 8.188 -0.405 18.343 1.678 1.727 -0.306 C22 A1DEX 16 A1DEX C26 C16 C 0 1 N N N N N N 9.875 0.632 22.501 3.734 -2.507 0.414 C26 A1DEX 17 A1DEX C27 C17 C 0 1 N N N N N N 10.597 1.434 23.525 3.667 -3.976 0.746 C27 A1DEX 18 A1DEX C29 C18 C 0 1 N N N N N N 9.870 2.638 24.102 4.959 -4.786 0.627 C29 A1DEX 19 A1DEX C30 C19 C 0 1 N N N N N N 10.994 2.857 23.144 3.843 -4.969 -0.404 C30 A1DEX 20 A1DEX N14 N2 N 0 1 N N N N N N 10.405 -0.120 19.356 0.380 -0.308 -0.348 N14 A1DEX 21 A1DEX N25 N3 N 0 1 N N N N N N 9.205 1.287 21.497 2.625 -1.745 0.502 N25 A1DEX 22 A1DEX N7 N4 N 0 1 N N N N N N 15.691 -3.744 16.067 -6.606 0.385 1.324 N7 A1DEX 23 A1DEX N9 N5 N 0 1 N N N N N N 15.465 -2.423 17.965 -4.922 1.106 -0.145 N9 A1DEX 24 A1DEX O10 O1 O 0 1 N N N N N N 16.615 -4.403 18.061 -6.143 2.524 1.026 O10 A1DEX 25 A1DEX O11 O2 O 0 1 N N N N N N 14.771 -3.136 14.069 -6.996 -1.798 1.553 O11 A1DEX 26 A1DEX O28 O3 O 0 1 N N N N N N 9.884 -0.611 22.508 4.784 -2.011 0.067 O28 A1DEX 27 A1DEX O3 O4 O 0 1 N N N N N N 14.928 0.747 17.954 -3.778 -0.428 -2.673 O3 A1DEX 28 A1DEX CL23 CL1 CL 0 0 N N N N N N 5.817 -0.831 17.070 2.985 4.096 -0.320 CL23 A1DEX 29 A1DEX CL24 CL2 CL 0 0 N N N N N N 4.513 0.767 19.502 5.489 2.496 0.620 CL24 A1DEX 30 A1DEX H1 H1 H 0 1 N N N N N N 13.889 -0.949 15.397 -5.067 -2.241 -0.199 H1 A1DEX 31 A1DEX H3 H3 H 0 1 N N N N N N 12.350 -2.029 20.007 -2.761 -0.211 0.923 H3 A1DEX 32 A1DEX H4 H4 H 0 1 N N N N N N 12.734 -2.420 18.297 -1.740 -1.660 0.747 H4 A1DEX 33 A1DEX H5 H5 H 0 1 N N N N N N 10.969 -0.929 17.509 -0.915 1.238 0.241 H5 A1DEX 34 A1DEX H6 H6 H 0 1 N N N N N N 10.286 -2.100 18.688 -0.348 0.185 1.560 H6 A1DEX 35 A1DEX H7 H7 H 0 1 N N N N N N 11.295 1.450 18.265 0.825 -0.563 -2.386 H7 A1DEX 36 A1DEX H8 H8 H 0 1 N N N N N N 10.923 1.826 19.982 -0.244 0.811 -2.014 H8 A1DEX 37 A1DEX H9 H9 H 0 1 N N N N N N 12.760 0.436 20.753 -0.960 -2.154 -1.864 H9 A1DEX 38 A1DEX H10 H10 H 0 1 N N N N N N 13.386 1.557 19.497 -1.585 -0.961 -3.032 H10 A1DEX 39 A1DEX H11 H11 H 0 1 N N N N N N 6.581 1.530 21.273 4.776 -0.250 0.857 H11 A1DEX 40 A1DEX H12 H12 H 0 1 N N N N N N 8.624 -0.946 17.516 0.812 2.284 -0.632 H12 A1DEX 41 A1DEX H13 H13 H 0 1 N N N N N N 11.278 0.896 24.201 2.975 -4.246 1.544 H13 A1DEX 42 A1DEX H14 H14 H 0 1 N N N N N N 9.997 2.897 25.163 5.857 -4.257 0.307 H14 A1DEX 43 A1DEX H15 H15 H 0 1 N N N N N N 8.837 2.854 23.793 5.117 -5.590 1.345 H15 A1DEX 44 A1DEX H16 H16 H 0 1 N N N N N N 11.946 3.275 23.502 3.267 -5.893 -0.363 H16 A1DEX 45 A1DEX H17 H17 H 0 1 N N N N N N 10.786 3.232 22.131 4.007 -4.560 -1.401 H17 A1DEX 46 A1DEX H18 H18 H 0 1 N N N N N N 9.296 2.283 21.514 1.769 -2.156 0.701 H18 A1DEX 47 A1DEX H19 H19 H 0 1 N N N N N N 16.047 -4.569 15.628 -7.304 0.607 1.961 H19 A1DEX 48 A1DEX H2 H2 H 0 1 N N N N N N 15.636 -2.247 18.934 -4.433 1.841 -0.547 H2 A1DEX 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DEX O11 C6 DOUB N N 1 A1DEX C6 C5 SING N N 2 A1DEX C6 N7 SING N N 3 A1DEX C5 C4 DOUB N N 4 A1DEX N7 C8 SING N N 5 A1DEX CL23 C21 SING N N 6 A1DEX C4 N9 SING N N 7 A1DEX C4 C2 SING N N 8 A1DEX C8 N9 SING N N 9 A1DEX C8 O10 DOUB N N 10 A1DEX O3 C2 DOUB N N 11 A1DEX C2 N1 SING N N 12 A1DEX C22 C21 DOUB Y N 13 A1DEX C22 C17 SING Y N 14 A1DEX C21 C20 SING Y N 15 A1DEX C13 C12 SING N N 16 A1DEX C13 N14 SING N N 17 A1DEX N1 C12 SING N N 18 A1DEX N1 C16 SING N N 19 A1DEX C15 N14 SING N N 20 A1DEX C15 C16 SING N N 21 A1DEX N14 C17 SING N N 22 A1DEX C17 C18 DOUB Y N 23 A1DEX C20 CL24 SING N N 24 A1DEX C20 C19 DOUB Y N 25 A1DEX C18 C19 SING Y N 26 A1DEX C18 N25 SING N N 27 A1DEX N25 C26 SING N N 28 A1DEX C26 O28 DOUB N N 29 A1DEX C26 C27 SING N N 30 A1DEX C30 C27 SING N N 31 A1DEX C30 C29 SING N N 32 A1DEX C27 C29 SING N N 33 A1DEX C5 H1 SING N N 34 A1DEX C12 H3 SING N N 35 A1DEX C12 H4 SING N N 36 A1DEX C13 H5 SING N N 37 A1DEX C13 H6 SING N N 38 A1DEX C15 H7 SING N N 39 A1DEX C15 H8 SING N N 40 A1DEX C16 H9 SING N N 41 A1DEX C16 H10 SING N N 42 A1DEX C19 H11 SING N N 43 A1DEX C22 H12 SING N N 44 A1DEX C27 H13 SING N N 45 A1DEX C29 H14 SING N N 46 A1DEX C29 H15 SING N N 47 A1DEX C30 H16 SING N N 48 A1DEX C30 H17 SING N N 49 A1DEX N25 H18 SING N N 50 A1DEX N7 H19 SING N N 51 A1DEX N9 H2 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DEX SMILES ACDLabs 14.52 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(Cl)cc1NC(=O)C1CC1" A1DEX InChI InChI 1.06 "InChI=1S/C19H19Cl2N5O4/c20-11-7-13(22-17(28)10-1-2-10)15(8-12(11)21)25-3-5-26(6-4-25)18(29)14-9-16(27)24-19(30)23-14/h7-10H,1-6H2,(H,22,28)(H2,23,24,27,30)" A1DEX InChIKey InChI 1.06 SKIDNTZAVFMLAC-UHFFFAOYSA-N A1DEX SMILES_CANONICAL CACTVS 3.385 "Clc1cc(NC(=O)C2CC2)c(cc1Cl)N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4" A1DEX SMILES CACTVS 3.385 "Clc1cc(NC(=O)C2CC2)c(cc1Cl)N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4" A1DEX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)NC(=O)C4CC4" A1DEX SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)NC(=O)C4CC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DEX "SYSTEMATIC NAME" ACDLabs 14.52 "N-{4,5-dichloro-2-[4-(2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]phenyl}cyclopropanecarboxamide" A1DEX "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[4-[[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-6-yl]carbonyl]piperazin-1-yl]-4,5-bis(chloranyl)phenyl]cyclopropanecarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DEX "Create component" 2026-04-27 RCSB A1DEX "Initial release" 2026-09-09 RCSB #