data_A1DFA # _chem_comp.id A1DFA _chem_comp.name "6-[4-(4,5-dichloro-2-nitrophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H13 Cl2 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-30 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.200 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DFA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13CL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DFA C8 C1 C 0 1 N N N N N N 111.882 5.624 108.803 -5.133 1.837 0.775 C8 A1DFA 1 A1DFA C6 C2 C 0 1 N N N N N N 110.922 6.289 106.616 -5.982 -0.330 0.995 C6 A1DFA 2 A1DFA C5 C3 C 0 1 N N N N N N 110.427 7.495 107.245 -4.993 -0.792 0.014 C5 A1DFA 3 A1DFA C2 C4 C 0 1 N N N N N N 110.216 8.911 109.350 -3.117 -0.303 -1.510 C2 A1DFA 4 A1DFA C4 C5 C 0 1 N N N N N N 110.666 7.705 108.562 -4.133 0.118 -0.514 C4 A1DFA 5 A1DFA O26 O1 O 0 1 N N N N N N 105.676 10.039 113.591 1.510 -3.112 0.392 O26 A1DFA 6 A1DFA C15 C6 C 0 1 N N N N N N 107.195 10.342 110.410 0.398 -0.673 -1.789 C15 A1DFA 7 A1DFA C16 C7 C 0 1 N N N N N N 108.631 10.026 110.820 -0.959 -1.329 -2.063 C16 A1DFA 8 A1DFA C12 C8 C 0 1 N N N N N N 108.244 7.667 110.315 -1.588 -0.838 0.332 C12 A1DFA 9 A1DFA C13 C9 C 0 1 N N N N N N 106.819 8.001 109.906 -0.206 -0.202 0.512 C13 A1DFA 10 A1DFA C17 C10 C 0 1 Y N N N N N 104.958 9.376 110.716 2.058 -0.428 -0.125 C17 A1DFA 11 A1DFA C18 C11 C 0 1 Y N N N N N 104.291 10.110 111.743 3.011 -1.317 0.355 C18 A1DFA 12 A1DFA C19 C12 C 0 1 Y N N N N N 102.903 10.269 111.744 4.299 -0.882 0.598 C19 A1DFA 13 A1DFA C20 C13 C 0 1 Y N N N N N 102.118 9.720 110.753 4.641 0.438 0.364 C20 A1DFA 14 A1DFA C21 C14 C 0 1 Y N N N N N 102.744 8.992 109.728 3.693 1.327 -0.115 C21 A1DFA 15 A1DFA C22 C15 C 0 1 Y N N N N N 104.120 8.831 109.718 2.403 0.897 -0.359 C22 A1DFA 16 A1DFA N1 N1 N 0 1 N N N N N N 109.114 8.833 110.119 -1.936 -0.803 -1.097 N1 A1DFA 17 A1DFA N14 N2 N 0 1 N N N N N N 106.329 9.178 110.650 0.756 -0.867 -0.377 N14 A1DFA 18 A1DFA N25 N3 N 1 1 N N N N N N 104.970 10.745 112.860 2.647 -2.729 0.607 N25 A1DFA 19 A1DFA N7 N4 N 0 1 N N N N N N 111.624 5.434 107.465 -6.003 0.976 1.332 N7 A1DFA 20 A1DFA N9 N5 N 0 1 N N N N N N 111.372 6.797 109.305 -4.220 1.437 -0.125 N9 A1DFA 21 A1DFA O10 O2 O 0 1 N N N N N N 112.509 4.824 109.488 -5.177 3.010 1.092 O10 A1DFA 22 A1DFA O11 O3 O 0 1 N N N N N N 110.766 5.987 105.437 -6.771 -1.111 1.493 O11 A1DFA 23 A1DFA O27 O4 O -1 1 N N N N N N 104.737 11.929 113.122 3.483 -3.508 1.027 O27 A1DFA 24 A1DFA O3 O5 O 0 1 N N N N N N 110.913 9.926 109.247 -3.350 -0.197 -2.697 O3 A1DFA 25 A1DFA CL23 CL1 CL 0 0 N N N N N N 101.810 8.273 108.443 4.126 2.983 -0.407 CL23 A1DFA 26 A1DFA CL24 CL2 CL 0 0 N N N N N N 100.388 9.951 110.804 6.261 0.982 0.671 CL24 A1DFA 27 A1DFA H1 H1 H 0 1 N N N N N N 109.872 8.221 106.670 -4.947 -1.831 -0.278 H1 A1DFA 28 A1DFA H2 H2 H 0 1 N N N N N N 107.171 10.598 109.341 1.158 -1.131 -2.422 H2 A1DFA 29 A1DFA H3 H3 H 0 1 N N N N N N 106.828 11.195 111.000 0.338 0.393 -2.005 H3 A1DFA 30 A1DFA H4 H4 H 0 1 N N N N N N 108.667 9.848 111.905 -1.283 -1.090 -3.077 H4 A1DFA 31 A1DFA H5 H5 H 0 1 N N N N N N 109.276 10.880 110.567 -0.874 -2.409 -1.951 H5 A1DFA 32 A1DFA H6 H6 H 0 1 N N N N N N 108.259 7.377 111.376 -1.564 -1.871 0.678 H6 A1DFA 33 A1DFA H7 H7 H 0 1 N N N N N N 108.612 6.832 109.701 -2.327 -0.277 0.905 H7 A1DFA 34 A1DFA H8 H8 H 0 1 N N N N N N 106.793 8.218 108.828 -0.258 0.858 0.264 H8 A1DFA 35 A1DFA H9 H9 H 0 1 N N N N N N 106.169 7.140 110.122 0.115 -0.318 1.547 H9 A1DFA 36 A1DFA H10 H10 H 0 1 N N N N N N 102.436 10.833 112.537 5.041 -1.572 0.972 H10 A1DFA 37 A1DFA H11 H11 H 0 1 N N N N N N 104.570 8.266 108.915 1.663 1.590 -0.733 H11 A1DFA 38 A1DFA H12 H12 H 0 1 N N N N N N 111.978 4.592 107.057 -6.651 1.297 1.979 H12 A1DFA 39 A1DFA H13 H13 H 0 1 N N N N N N 111.526 7.000 110.272 -3.611 2.087 -0.507 H13 A1DFA 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DFA O11 C6 DOUB N N 1 A1DFA C6 C5 SING N N 2 A1DFA C6 N7 SING N N 3 A1DFA C5 C4 DOUB N N 4 A1DFA N7 C8 SING N N 5 A1DFA CL23 C21 SING N N 6 A1DFA C4 N9 SING N N 7 A1DFA C4 C2 SING N N 8 A1DFA C8 N9 SING N N 9 A1DFA C8 O10 DOUB N N 10 A1DFA O3 C2 DOUB N N 11 A1DFA C2 N1 SING N N 12 A1DFA C22 C21 DOUB Y N 13 A1DFA C22 C17 SING Y N 14 A1DFA C21 C20 SING Y N 15 A1DFA C13 C12 SING N N 16 A1DFA C13 N14 SING N N 17 A1DFA N1 C12 SING N N 18 A1DFA N1 C16 SING N N 19 A1DFA C15 N14 SING N N 20 A1DFA C15 C16 SING N N 21 A1DFA N14 C17 SING N N 22 A1DFA C17 C18 DOUB Y N 23 A1DFA C20 CL24 SING N N 24 A1DFA C20 C19 DOUB Y N 25 A1DFA C18 C19 SING Y N 26 A1DFA C18 N25 SING N N 27 A1DFA N25 O27 SING N N 28 A1DFA N25 O26 DOUB N N 29 A1DFA C5 H1 SING N N 30 A1DFA C15 H2 SING N N 31 A1DFA C15 H3 SING N N 32 A1DFA C16 H4 SING N N 33 A1DFA C16 H5 SING N N 34 A1DFA C12 H6 SING N N 35 A1DFA C12 H7 SING N N 36 A1DFA C13 H8 SING N N 37 A1DFA C13 H9 SING N N 38 A1DFA C19 H10 SING N N 39 A1DFA C22 H11 SING N N 40 A1DFA N7 H12 SING N N 41 A1DFA N9 H13 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DFA SMILES ACDLabs 14.52 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(Cl)cc1N(=O)=O" A1DFA InChI InChI 1.06 "InChI=1S/C15H13Cl2N5O5/c16-8-5-11(12(22(26)27)6-9(8)17)20-1-3-21(4-2-20)14(24)10-7-13(23)19-15(25)18-10/h5-7H,1-4H2,(H2,18,19,23,25)" A1DFA InChIKey InChI 1.06 IKRQNTCNHMFQRP-UHFFFAOYSA-N A1DFA SMILES_CANONICAL CACTVS 3.385 "Clc1cc(N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)c(cc1Cl)[N](=O)=O" A1DFA SMILES CACTVS 3.385 "Clc1cc(N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)c(cc1Cl)[N](=O)=O" A1DFA SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N(=O)=O)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" A1DFA SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N(=O)=O)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DFA "SYSTEMATIC NAME" ACDLabs 14.52 "6-[4-(4,5-dichloro-2-nitrophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" A1DFA "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "6-[4-[4,5-bis(chloranyl)-2-nitro-phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DFA "Create component" 2026-04-30 RCSB A1DFA "Initial release" 2026-09-09 RCSB #