data_A1DFC # _chem_comp.id A1DFC _chem_comp.name "N-(3-{[(pyridin-2-yl)sulfanyl]methyl}phenyl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 Cl N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-01 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.784 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DFC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13CU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DFC C10 C1 C 0 1 Y N N N N N 8.527 3.601 8.478 -0.066 1.735 0.307 C10 A1DFC 1 A1DFC C13 C2 C 0 1 Y N N N N N 8.450 2.197 12.224 -3.548 -0.437 -0.294 C13 A1DFC 2 A1DFC C15 C3 C 0 1 Y N N N N N 9.045 -0.128 12.086 -5.526 -1.713 -0.721 C15 A1DFC 3 A1DFC C17 C4 C 0 1 Y N N N N N 8.778 1.049 14.185 -5.075 -0.731 1.412 C17 A1DFC 4 A1DFC C02 C5 C 0 1 N N N N N N 5.120 5.985 6.925 3.548 -0.421 0.157 C02 A1DFC 5 A1DFC C03 C6 C 0 1 N N N N N N 4.452 7.201 6.323 4.851 -1.172 0.258 C03 A1DFC 6 A1DFC C06 C7 C 0 1 Y N N N N N 7.113 4.411 6.702 2.327 1.620 0.201 C06 A1DFC 7 A1DFC C07 C8 C 0 1 Y N N N N N 7.383 3.297 5.925 2.366 2.923 -0.280 C07 A1DFC 8 A1DFC C08 C9 C 0 1 Y N N N N N 8.210 2.313 6.439 1.191 3.623 -0.469 C08 A1DFC 9 A1DFC C09 C10 C 0 1 Y N N N N N 8.786 2.467 7.715 -0.024 3.030 -0.176 C09 A1DFC 10 A1DFC C11 C11 C 0 1 N N N N N N 9.157 3.826 9.878 -1.392 1.093 0.624 C11 A1DFC 11 A1DFC C14 C12 C 0 1 Y N N N N N 8.751 1.067 11.459 -4.331 -1.183 -1.171 C14 A1DFC 12 A1DFC C16 C13 C 0 1 Y N N N N N 9.073 -0.123 13.485 -5.900 -1.480 0.597 C16 A1DFC 13 A1DFC C19 C14 C 0 1 Y N N N N N 7.702 4.578 7.950 1.106 1.028 0.494 C19 A1DFC 14 A1DFC N05 N1 N 0 1 N N N N N N 6.320 5.517 6.270 3.516 0.906 0.388 N05 A1DFC 15 A1DFC N18 N2 N 0 1 Y N N N N N 8.477 2.158 13.549 -3.940 -0.237 0.955 N18 A1DFC 16 A1DFC O01 O1 O 0 1 N N N N N N 4.620 5.461 7.860 2.529 -1.011 -0.132 O01 A1DFC 17 A1DFC S12 S1 S 0 1 N N N N N N 8.058 3.753 11.348 -2.019 0.240 -0.849 S12 A1DFC 18 A1DFC H151 H1 H 0 0 N N N N N N 9.245 -1.027 11.521 -6.154 -2.296 -1.378 H151 A1DFC 19 A1DFC H171 H2 H 0 0 N N N N N N 8.798 1.043 15.265 -5.363 -0.547 2.436 H171 A1DFC 20 A1DFC H031 H3 H 0 0 N N N N N N 5.278 7.924 6.256 5.563 -0.762 -0.459 H031 A1DFC 21 A1DFC H1 H4 H 0 1 N N N N N N 4.183 6.857 5.314 5.252 -1.070 1.267 H1 A1DFC 22 A1DFC H071 H6 H 0 0 N N N N N N 6.957 3.198 4.938 3.314 3.386 -0.509 H071 A1DFC 23 A1DFC H081 H7 H 0 0 N N N N N N 8.414 1.425 5.860 1.220 4.636 -0.842 H081 A1DFC 24 A1DFC H091 H8 H 0 0 N N N N N N 9.435 1.697 8.105 -0.942 3.579 -0.326 H091 A1DFC 25 A1DFC H111 H9 H 0 0 N N N N N N 9.933 3.059 10.013 -1.263 0.373 1.433 H111 A1DFC 26 A1DFC H112 H10 H 0 0 N N N N N N 9.624 4.822 9.869 -2.103 1.860 0.931 H112 A1DFC 27 A1DFC H141 H11 H 0 0 N N N N N N 8.754 1.128 10.381 -4.009 -1.344 -2.189 H141 A1DFC 28 A1DFC H161 H12 H 0 0 N N N N N N 9.323 -1.025 14.023 -6.827 -1.880 0.979 H161 A1DFC 29 A1DFC H191 H13 H 0 0 N N N N N N 7.514 5.480 8.513 1.072 0.015 0.868 H191 A1DFC 30 A1DFC H051 H14 H 0 0 N N N N N N 6.618 6.006 5.450 4.316 1.367 0.685 H051 A1DFC 31 A1DFC CL1 C1 CL 0 0 N Y N N N N 3.080 8.215 6.768 4.569 -2.915 -0.104 CL1 A1DFC 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DFC C07 C08 DOUB Y N 1 A1DFC C07 C06 SING Y N 2 A1DFC N05 C06 SING N N 3 A1DFC N05 C02 SING N N 4 A1DFC C03 C02 SING N N 5 A1DFC C08 C09 SING Y N 6 A1DFC C06 C19 DOUB Y N 7 A1DFC C02 O01 DOUB N N 8 A1DFC C09 C10 DOUB Y N 9 A1DFC C19 C10 SING Y N 10 A1DFC C10 C11 SING N N 11 A1DFC C11 S12 SING N N 12 A1DFC S12 C13 SING N N 13 A1DFC C14 C15 DOUB Y N 14 A1DFC C14 C13 SING Y N 15 A1DFC C15 C16 SING Y N 16 A1DFC C13 N18 DOUB Y N 17 A1DFC C16 C17 DOUB Y N 18 A1DFC N18 C17 SING Y N 19 A1DFC C15 H151 SING N N 20 A1DFC C17 H171 SING N N 21 A1DFC C03 H031 SING N N 22 A1DFC C03 H1 SING N N 23 A1DFC C07 H071 SING N N 24 A1DFC C08 H081 SING N N 25 A1DFC C09 H091 SING N N 26 A1DFC C11 H111 SING N N 27 A1DFC C11 H112 SING N N 28 A1DFC C14 H141 SING N N 29 A1DFC C16 H161 SING N N 30 A1DFC C19 H191 SING N N 31 A1DFC N05 H051 SING N N 32 A1DFC C03 CL1 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DFC SMILES ACDLabs 14.52 "ClCC(=O)Nc1cccc(CSc2ccccn2)c1" A1DFC InChI InChI 1.06 "InChI=1S/C14H13ClN2OS/c15-9-13(18)17-12-5-3-4-11(8-12)10-19-14-6-1-2-7-16-14/h1-8H,9-10H2,(H,17,18)" A1DFC InChIKey InChI 1.06 OYHVKCOATSONJM-UHFFFAOYSA-N A1DFC SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)Nc1cccc(CSc2ccccn2)c1" A1DFC SMILES CACTVS 3.385 "ClCC(=O)Nc1cccc(CSc2ccccn2)c1" A1DFC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)SCc2cccc(c2)NC(=O)CCl" A1DFC SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)SCc2cccc(c2)NC(=O)CCl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DFC "SYSTEMATIC NAME" ACDLabs 14.52 "2-chloro-N-(3-{[(pyridin-2-yl)sulfanyl]methyl}phenyl)acetamide" A1DFC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-chloranyl-~{N}-[3-(pyridin-2-ylsulfanylmethyl)phenyl]ethanamide" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DFC _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C03 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DFC "Create component" 2026-05-01 RCSB A1DFC "Modify PCM" 2026-05-01 RCSB A1DFC "Initial release" 2026-08-26 RCSB #