data_A1DFD # _chem_comp.id A1DFD _chem_comp.name "3-(2-chloroacetamido)-N-(pyridin-2-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H12 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-01 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.717 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13CV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DFD C13 C1 C 0 1 Y N N N N N -24.100 18.080 -50.317 6.116 0.486 0.342 C13 A1DFD 1 A1DFD C15 C2 C 0 1 Y N N N N N -26.306 17.627 -51.041 4.588 2.228 -0.245 C15 A1DFD 2 A1DFD C20 C3 C 0 1 Y N N N N N -24.609 9.683 -48.515 -1.878 -2.953 0.082 C20 A1DFD 3 A1DFD C02 C4 C 0 1 N N N N N N -25.137 9.810 -52.216 -3.697 0.131 -0.034 C02 A1DFD 4 A1DFD C03 C5 C 0 1 N N N N N N -25.219 8.612 -53.194 -5.058 0.691 -0.353 C03 A1DFD 5 A1DFD C06 C6 C 0 1 Y N N N N N -24.611 10.284 -49.776 -2.082 -1.609 -0.207 C06 A1DFD 6 A1DFD C07 C7 C 0 1 Y N N N N N -24.495 11.646 -49.908 -1.000 -0.747 -0.297 C07 A1DFD 7 A1DFD C08 C8 C 0 1 Y N N N N N -24.345 12.391 -48.758 0.292 -1.234 -0.097 C08 A1DFD 8 A1DFD C09 C9 C 0 1 N N N N N N -24.193 13.899 -48.892 1.451 -0.322 -0.191 C09 A1DFD 9 A1DFD C11 C10 C 0 1 Y N N N N N -25.077 15.901 -50.251 3.781 0.082 0.019 C11 A1DFD 10 A1DFD C12 C11 C 0 1 Y N N N N N -23.983 16.731 -50.045 5.049 -0.396 0.329 C12 A1DFD 11 A1DFD C14 C12 C 0 1 Y N N N N N -25.284 18.523 -50.828 5.875 1.821 0.049 C14 A1DFD 12 A1DFD C18 C13 C 0 1 Y N N N N N -24.366 11.805 -47.476 0.486 -2.586 0.193 C18 A1DFD 13 A1DFD C19 C14 C 0 1 Y N N N N N -24.519 10.437 -47.362 -0.598 -3.435 0.280 C19 A1DFD 14 A1DFD N05 N1 N 0 1 N N N N N N -24.763 9.422 -50.904 -3.380 -1.125 -0.407 N05 A1DFD 15 A1DFD N10 N2 N 0 1 N N N N N N -25.009 14.473 -49.933 2.698 -0.794 0.003 N10 A1DFD 16 A1DFD N16 N3 N 0 1 Y N N N N N -26.190 16.322 -50.727 3.591 1.364 -0.250 N16 A1DFD 17 A1DFD O01 O1 O 0 1 N N N N N N -25.334 10.951 -52.549 -2.885 0.810 0.559 O01 A1DFD 18 A1DFD O17 O2 O 0 1 N N N N N N -23.479 14.509 -48.168 1.280 0.855 -0.442 O17 A1DFD 19 A1DFD H131 H1 H 0 0 N N N N N N -23.282 18.760 -50.131 7.112 0.144 0.580 H131 A1DFD 20 A1DFD H151 H2 H 0 0 N N N N N N -27.230 17.981 -51.473 4.396 3.266 -0.473 H151 A1DFD 21 A1DFD H201 H3 H 0 0 N N N N N N -24.679 8.608 -48.441 -2.723 -3.621 0.156 H201 A1DFD 22 A1DFD H032 H4 H 0 0 N N N N N N -25.727 7.769 -52.702 -5.207 0.692 -1.433 H032 A1DFD 23 A1DFD H031 H5 H 0 0 N N N N N N -25.783 8.907 -54.091 -5.825 0.075 0.118 H031 A1DFD 24 A1DFD H071 H7 H 0 0 N N N N N N -24.520 12.117 -50.879 -1.157 0.298 -0.521 H071 A1DFD 25 A1DFD H121 H8 H 0 0 N N N N N N -23.052 16.327 -49.677 5.201 -1.441 0.557 H121 A1DFD 26 A1DFD H141 H9 H 0 0 N N N N N N -25.418 19.568 -51.064 6.685 2.535 0.051 H141 A1DFD 27 A1DFD H181 H10 H 0 0 N N N N N N -24.264 12.419 -46.593 1.485 -2.967 0.348 H181 A1DFD 28 A1DFD H191 H11 H 0 0 N N N N N N -24.567 9.967 -46.391 -0.446 -4.480 0.509 H191 A1DFD 29 A1DFD H051 H12 H 0 0 N N N N N N -24.589 8.449 -50.754 -4.052 -1.694 -0.815 H051 A1DFD 30 A1DFD H101 H13 H 0 0 N N N N N N -25.570 13.850 -50.478 2.842 -1.745 0.131 H101 A1DFD 31 A1DFD CL1 CL1 CL 0 0 N Y N N N N -23.446 8.088 -53.695 -5.175 2.379 0.271 CL1 A1DFD 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DFD C03 C02 SING N N 1 A1DFD O01 C02 DOUB N N 2 A1DFD C02 N05 SING N N 3 A1DFD C15 C14 DOUB Y N 4 A1DFD C15 N16 SING Y N 5 A1DFD N05 C06 SING N N 6 A1DFD C14 C13 SING Y N 7 A1DFD N16 C11 DOUB Y N 8 A1DFD C13 C12 DOUB Y N 9 A1DFD C11 C12 SING Y N 10 A1DFD C11 N10 SING N N 11 A1DFD N10 C09 SING N N 12 A1DFD C07 C06 DOUB Y N 13 A1DFD C07 C08 SING Y N 14 A1DFD C06 C20 SING Y N 15 A1DFD C09 C08 SING N N 16 A1DFD C09 O17 DOUB N N 17 A1DFD C08 C18 DOUB Y N 18 A1DFD C20 C19 DOUB Y N 19 A1DFD C18 C19 SING Y N 20 A1DFD C13 H131 SING N N 21 A1DFD C15 H151 SING N N 22 A1DFD C20 H201 SING N N 23 A1DFD C03 H032 SING N N 24 A1DFD C03 H031 SING N N 25 A1DFD C07 H071 SING N N 26 A1DFD C12 H121 SING N N 27 A1DFD C14 H141 SING N N 28 A1DFD C18 H181 SING N N 29 A1DFD C19 H191 SING N N 30 A1DFD N05 H051 SING N N 31 A1DFD N10 H101 SING N N 32 A1DFD C03 CL1 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DFD SMILES ACDLabs 14.52 "O=C(Nc1ccccn1)c1cccc(NC(=O)CCl)c1" A1DFD InChI InChI 1.06 "InChI=1S/C14H12ClN3O2/c15-9-13(19)17-11-5-3-4-10(8-11)14(20)18-12-6-1-2-7-16-12/h1-8H,9H2,(H,17,19)(H,16,18,20)" A1DFD InChIKey InChI 1.06 AWMRHRCEJUNJFG-UHFFFAOYSA-N A1DFD SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)Nc1cccc(c1)C(=O)Nc2ccccn2" A1DFD SMILES CACTVS 3.385 "ClCC(=O)Nc1cccc(c1)C(=O)Nc2ccccn2" A1DFD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)NC(=O)c2cccc(c2)NC(=O)CCl" A1DFD SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)NC(=O)c2cccc(c2)NC(=O)CCl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DFD "SYSTEMATIC NAME" ACDLabs 14.52 "3-(2-chloroacetamido)-N-(pyridin-2-yl)benzamide" A1DFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-(2-chloranylethanoylamino)-~{N}-pyridin-2-yl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DFD "Create component" 2026-05-01 RCSB A1DFD "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DFD _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C03 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #