data_A1DFV # _chem_comp.id A1DFV _chem_comp.name "D-phenylalanyl-N-[(2S,3S)-6-amino-1-chloro-2-hydroxy-6-oxohexan-3-yl]-L-prolinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-07 _chem_comp.pdbx_modified_date 2026-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.922 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DFV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11RI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DFV C1 C1 C 0 1 N N N N N N -16.417 -2.014 -8.876 -1.180 -0.003 0.353 C1 A1DFV 1 A1DFV C15 C2 C 0 1 N N S N N N -15.521 -1.722 -11.159 -3.484 0.146 -0.425 C15 A1DFV 2 A1DFV C16 C3 C 0 1 N N S N N N -14.153 -2.345 -11.510 -3.796 1.644 -0.430 C16 A1DFV 3 A1DFV C17 C4 C 0 1 N N N N N N -16.091 -0.667 -12.109 -4.766 -0.641 -0.141 C17 A1DFV 4 A1DFV C18 C5 C 0 1 N N N N N N -17.617 -0.564 -12.044 -4.481 -2.139 -0.259 C18 A1DFV 5 A1DFV C20 C6 C 0 1 N N N N N N -18.141 0.625 -12.809 -5.743 -2.914 0.020 C20 A1DFV 6 A1DFV N N1 N 0 1 N N N N N N -21.194 -1.476 -7.956 3.375 -0.892 -1.937 N A1DFV 7 A1DFV CA C7 C 0 1 N N R N N N -20.291 -1.191 -6.818 3.162 -0.420 -0.563 CA A1DFV 8 A1DFV C C8 C 0 1 N N N N N N -18.908 -1.010 -7.415 1.755 -0.745 -0.132 C A1DFV 9 A1DFV O O1 O 0 1 N N N N N N -18.751 -0.261 -8.383 1.127 -1.605 -0.713 O A1DFV 10 A1DFV CB C9 C 0 1 N N N N N N -20.732 0.044 -6.017 4.155 -1.112 0.374 CB A1DFV 11 A1DFV CG C10 C 0 1 Y N N N N N -19.901 0.271 -4.775 5.557 -0.690 0.021 CG A1DFV 12 A1DFV CD1 C11 C 0 1 Y N N N N N -19.938 -0.630 -3.715 6.282 -1.409 -0.911 CD1 A1DFV 13 A1DFV CD2 C12 C 0 1 Y N N N N N -19.082 1.386 -4.677 6.117 0.421 0.624 CD2 A1DFV 14 A1DFV CE1 C13 C 0 1 Y N N N N N -19.170 -0.420 -2.587 7.568 -1.022 -1.236 CE1 A1DFV 15 A1DFV CE2 C14 C 0 1 Y N N N N N -18.321 1.598 -3.542 7.404 0.808 0.299 CE2 A1DFV 16 A1DFV CZ C15 C 0 1 Y N N N N N -18.365 0.690 -2.512 8.130 0.086 -0.628 CZ A1DFV 17 A1DFV N1 N2 N 0 1 N N N N N N -17.867 -1.668 -6.896 1.195 -0.081 0.897 N1 A1DFV 18 A1DFV CA1 C16 C 0 1 N N S N N N -16.521 -1.582 -7.437 -0.161 -0.300 1.423 CA1 A1DFV 19 A1DFV O1 O2 O 0 1 N N N N N N -17.062 -3.038 -9.131 -0.816 0.359 -0.747 O1 A1DFV 20 A1DFV CB1 C17 C 0 1 N N N N N N -15.598 -2.379 -6.504 -0.353 0.664 2.612 CB1 A1DFV 21 A1DFV CG1 C18 C 0 1 N N N N N N -16.485 -2.677 -5.297 1.104 0.973 3.048 CG1 A1DFV 22 A1DFV CD C19 C 0 1 N N N N N N -17.939 -2.616 -5.774 1.842 0.982 1.688 CD A1DFV 23 A1DFV N3 N3 N 0 1 N N N N N N -15.687 -1.350 -9.767 -2.494 -0.143 0.616 N3 A1DFV 24 A1DFV C19 C20 C 0 1 N N N N N N -13.360 -2.820 -10.306 -2.514 2.430 -0.714 C19 A1DFV 25 A1DFV N4 N4 N 0 1 N N N N N N -19.405 0.557 -13.205 -5.732 -4.261 -0.026 N4 A1DFV 26 A1DFV O3 O3 O 0 1 N N N N N N -14.013 -2.781 -12.639 -4.761 1.926 -1.445 O3 A1DFV 27 A1DFV O4 O4 O 0 1 N N N N N N -17.417 1.596 -13.035 -6.770 -2.325 0.287 O4 A1DFV 28 A1DFV H1 H1 H 0 1 N N N N N N -16.214 -2.567 -11.286 -3.086 -0.146 -1.396 H1 A1DFV 29 A1DFV H2 H2 H 0 1 N N N N N N -15.801 -0.928 -13.137 -5.115 -0.415 0.866 H2 A1DFV 30 A1DFV H3 H3 H 0 1 N N N N N N -15.662 0.311 -11.844 -5.532 -0.359 -0.863 H3 A1DFV 31 A1DFV H4 H4 H 0 1 N N N N N N -17.921 -0.470 -10.991 -4.131 -2.365 -1.266 H4 A1DFV 32 A1DFV H5 H5 H 0 1 N N N N N N -18.052 -1.480 -12.471 -3.715 -2.421 0.463 H5 A1DFV 33 A1DFV H6 H6 H 0 1 N N N N N N -22.126 -1.605 -7.618 4.290 -0.629 -2.272 H6 A1DFV 34 A1DFV H7 H7 H 0 1 N N N N N N -21.175 -0.708 -8.597 3.240 -1.890 -2.002 H7 A1DFV 35 A1DFV H9 H9 H 0 1 N N N N N N -20.274 -2.059 -6.142 3.315 0.658 -0.521 H9 A1DFV 36 A1DFV H10 H10 H 0 1 N N N N N N -20.646 0.930 -6.663 3.939 -0.830 1.405 H10 A1DFV 37 A1DFV H11 H11 H 0 1 N N N N N N -21.782 -0.090 -5.717 4.063 -2.193 0.266 H11 A1DFV 38 A1DFV H12 H12 H 0 1 N N N N N N -20.573 -1.501 -3.775 5.843 -2.275 -1.386 H12 A1DFV 39 A1DFV H13 H13 H 0 1 N N N N N N -19.038 2.093 -5.492 5.550 0.986 1.348 H13 A1DFV 40 A1DFV H14 H14 H 0 1 N N N N N N -19.202 -1.124 -1.769 8.135 -1.585 -1.963 H14 A1DFV 41 A1DFV H15 H15 H 0 1 N N N N N N -17.694 2.474 -3.466 7.842 1.676 0.771 H15 A1DFV 42 A1DFV H16 H16 H 0 1 N N N N N N -17.759 0.851 -1.633 9.136 0.388 -0.882 H16 A1DFV 43 A1DFV H17 H17 H 0 1 N N N N N N -16.200 -0.531 -7.386 -0.266 -1.332 1.758 H17 A1DFV 44 A1DFV H18 H18 H 0 1 N N N N N N -15.262 -3.310 -6.984 -0.861 1.574 2.293 H18 A1DFV 45 A1DFV H19 H19 H 0 1 N N N N N N -14.723 -1.780 -6.211 -0.901 0.177 3.419 H19 A1DFV 46 A1DFV H20 H20 H 0 1 N N N N N N -16.260 -3.679 -4.903 1.168 1.946 3.535 H20 A1DFV 47 A1DFV H21 H21 H 0 1 N N N N N N -16.315 -1.927 -4.511 1.493 0.188 3.695 H21 A1DFV 48 A1DFV H22 H22 H 0 1 N N N N N N -18.602 -2.242 -4.980 2.899 0.760 1.829 H22 A1DFV 49 A1DFV H23 H23 H 0 1 N N N N N N -18.289 -3.603 -6.110 1.718 1.948 1.198 H23 A1DFV 50 A1DFV H24 H24 H 0 1 N N N N N N -15.214 -0.527 -9.452 -2.784 -0.436 1.494 H24 A1DFV 51 A1DFV H25 H25 H 0 1 N N N N N N -13.939 -3.580 -9.760 -1.748 2.148 0.009 H25 A1DFV 52 A1DFV H26 H26 H 0 1 N N N N N N -12.407 -3.256 -10.641 -2.164 2.204 -1.721 H26 A1DFV 53 A1DFV CL CL CL 0 0 N Y N N N N -13.166 -1.987 -9.663 -2.849 4.196 -0.575 CL A1DFV 54 A1DFV H28 H28 H 0 1 N N N N N N -19.812 1.317 -13.712 -4.911 -4.732 -0.240 H28 A1DFV 55 A1DFV H29 H29 H 0 1 N N N N N N -19.951 -0.254 -12.996 -6.544 -4.759 0.153 H29 A1DFV 56 A1DFV H27 H27 H 0 1 N N N N N N -13.137 -3.136 -12.735 -4.474 1.691 -2.338 H27 A1DFV 57 A1DFV H30 H30 H 0 1 N Y N N N N -13.617 -1.394 -11.644 -4.194 1.936 0.542 H30 A1DFV 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DFV N4 C20 SING N N 1 A1DFV O4 C20 DOUB N N 2 A1DFV C20 C18 SING N N 3 A1DFV O3 C16 SING N N 4 A1DFV C17 C18 SING N N 5 A1DFV C17 C15 SING N N 6 A1DFV C16 C15 SING N N 7 A1DFV C16 C19 SING N N 8 A1DFV C15 N3 SING N N 9 A1DFV N3 C1 SING N N 10 A1DFV O1 C1 DOUB N N 11 A1DFV C1 CA1 SING N N 12 A1DFV O C DOUB N N 13 A1DFV N CA SING N N 14 A1DFV CA1 N1 SING N N 15 A1DFV CA1 CB1 SING N N 16 A1DFV C N1 SING N N 17 A1DFV C CA SING N N 18 A1DFV N1 CD SING N N 19 A1DFV CA CB SING N N 20 A1DFV CB1 CG1 SING N N 21 A1DFV CB CG SING N N 22 A1DFV CD CG1 SING N N 23 A1DFV CG CD2 DOUB Y N 24 A1DFV CG CD1 SING Y N 25 A1DFV CD2 CE2 SING Y N 26 A1DFV CD1 CE1 DOUB Y N 27 A1DFV CE2 CZ DOUB Y N 28 A1DFV CE1 CZ SING Y N 29 A1DFV C15 H1 SING N N 30 A1DFV C17 H2 SING N N 31 A1DFV C17 H3 SING N N 32 A1DFV C18 H4 SING N N 33 A1DFV C18 H5 SING N N 34 A1DFV N H6 SING N N 35 A1DFV N H7 SING N N 36 A1DFV CA H9 SING N N 37 A1DFV CB H10 SING N N 38 A1DFV CB H11 SING N N 39 A1DFV CD1 H12 SING N N 40 A1DFV CD2 H13 SING N N 41 A1DFV CE1 H14 SING N N 42 A1DFV CE2 H15 SING N N 43 A1DFV CZ H16 SING N N 44 A1DFV CA1 H17 SING N N 45 A1DFV CB1 H18 SING N N 46 A1DFV CB1 H19 SING N N 47 A1DFV CG1 H20 SING N N 48 A1DFV CG1 H21 SING N N 49 A1DFV CD H22 SING N N 50 A1DFV CD H23 SING N N 51 A1DFV N3 H24 SING N N 52 A1DFV C19 H25 SING N N 53 A1DFV C19 H26 SING N N 54 A1DFV C19 CL SING N N 55 A1DFV N4 H28 SING N N 56 A1DFV N4 H29 SING N N 57 A1DFV O3 H27 SING N N 58 A1DFV C16 H30 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DFV SMILES ACDLabs 14.52 "O=C(NC(CCC(N)=O)C(O)CCl)C1CCCN1C(=O)C(N)Cc1ccccc1" A1DFV InChI InChI 1.06 "InChI=1S/C20H29ClN4O4/c21-12-17(26)15(8-9-18(23)27)24-19(28)16-7-4-10-25(16)20(29)14(22)11-13-5-2-1-3-6-13/h1-3,5-6,14-17,26H,4,7-12,22H2,(H2,23,27)(H,24,28)/t14-,15+,16+,17-/m1/s1" A1DFV InChIKey InChI 1.06 SAPRFUOQIDZJGI-LTIDMASMSA-N A1DFV SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCC(N)=O)[C@H](O)CCl" A1DFV SMILES CACTVS 3.385 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCC(N)=O)[CH](O)CCl" A1DFV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCC(=O)N)[C@@H](CCl)O)N" A1DFV SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCC(=O)N)C(CCl)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DFV "SYSTEMATIC NAME" ACDLabs 14.52 "D-phenylalanyl-N-[(2S,3S)-6-amino-1-chloro-2-hydroxy-6-oxohexan-3-yl]-L-prolinamide" A1DFV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-~{N}-[(2~{S},3~{S})-6-azanyl-1-chloranyl-2-oxidanyl-6-oxidanylidene-hexan-3-yl]-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DFV "Create component" 2026-05-07 RCSB A1DFV "Modify PCM" 2026-05-08 RCSB A1DFV "Initial release" 2026-10-07 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 A1DFV SER None Crosslinker "Amino-acid side chain" "Any position" C16 OG ? ? 2 A1DFV HIS None Crosslinker "Amino-acid side chain" "Any position" C19 NE2 ? ? #