data_A1DH2 # _chem_comp.id A1DH2 _chem_comp.name "6-[4-(2-amino-4,5-dichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 Cl2 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-19 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DH2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13FA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DH2 C5 C1 C 0 1 N N N N N N 110.009 7.780 106.914 4.850 -0.804 0.171 C5 A1DH2 1 A1DH2 C4 C2 C 0 1 N N N N N N 110.278 7.962 108.230 3.943 -0.052 -0.504 C4 A1DH2 2 A1DH2 N1 N1 N 0 1 N N N N N N 108.772 9.066 109.852 1.784 -1.162 -0.855 N1 A1DH2 3 A1DH2 C2 C3 C 0 1 N N N N N N 109.846 9.140 109.048 2.936 -0.700 -1.380 C2 A1DH2 4 A1DH2 C6 C4 C 0 1 N N N N N N 110.480 6.595 106.233 5.823 -0.120 1.031 C6 A1DH2 5 A1DH2 C21 C5 C 0 1 Y N N N N N 102.406 9.321 109.277 -3.938 0.855 -0.190 C21 A1DH2 6 A1DH2 C8 C6 C 0 1 N N N N N N 111.489 5.860 108.382 4.861 1.924 0.431 C8 A1DH2 7 A1DH2 C13 C7 C 0 1 N N N N N N 106.484 8.195 109.514 -0.561 -1.282 -1.510 C13 A1DH2 8 A1DH2 C12 C8 C 0 1 N N N N N N 107.936 7.842 109.833 0.826 -1.911 -1.682 C12 A1DH2 9 A1DH2 C19 C9 C 0 1 Y N N N N N 102.571 10.258 111.494 -4.430 -1.193 0.958 C19 A1DH2 10 A1DH2 C18 C10 C 0 1 Y N N N N N 103.953 10.048 111.513 -3.121 -1.612 0.775 C18 A1DH2 11 A1DH2 C17 C11 C 0 1 Y N N N N N 104.576 9.457 110.375 -2.216 -0.789 0.105 C17 A1DH2 12 A1DH2 C16 C12 C 0 1 N N N N N N 108.235 10.125 110.702 1.456 -0.937 0.561 C16 A1DH2 13 A1DH2 C20 C13 C 0 1 Y N N N N N 101.805 9.898 110.393 -4.837 0.038 0.475 C20 A1DH2 14 A1DH2 C15 C14 C 0 1 N N N N N N 106.810 10.459 110.287 0.047 -0.340 0.644 C15 A1DH2 15 A1DH2 C22 C15 C 0 1 Y N N N N N 103.790 9.106 109.277 -2.631 0.444 -0.376 C22 A1DH2 16 A1DH2 N14 N2 N 0 1 N N N N N N 105.986 9.257 110.418 -0.892 -1.206 -0.082 N14 A1DH2 17 A1DH2 N25 N3 N 0 1 N N N N N N 104.700 10.411 112.621 -2.708 -2.858 1.263 N25 A1DH2 18 A1DH2 N7 N4 N 0 1 N N N N N N 111.199 5.708 107.039 5.780 1.225 1.120 N7 A1DH2 19 A1DH2 N9 N5 N 0 1 N N N N N N 110.998 7.022 108.935 3.965 1.319 -0.367 N9 A1DH2 20 A1DH2 O10 O1 O 0 1 N N N N N N 112.129 5.035 109.027 4.847 3.136 0.525 O10 A1DH2 21 A1DH2 O11 O2 O 0 1 N N N N N N 110.289 6.335 105.044 6.653 -0.756 1.654 O11 A1DH2 22 A1DH2 O3 O3 O 0 1 N N N N N N 110.531 10.179 108.931 3.151 -0.813 -2.570 O3 A1DH2 23 A1DH2 CL23 CL1 CL 0 0 N N N N N N 101.465 8.857 107.866 -4.457 2.396 -0.799 CL23 A1DH2 24 A1DH2 CL24 CL2 CL 0 0 N N N N N N 100.076 10.193 110.444 -6.476 0.560 0.706 CL24 A1DH2 25 A1DH2 H1 H1 H 0 1 N N N N N N 109.441 8.522 106.373 4.853 -1.880 0.080 H1 A1DH2 26 A1DH2 H3 H3 H 0 1 N N N N N N 106.420 8.548 108.474 -0.558 -0.276 -1.929 H3 A1DH2 27 A1DH2 H4 H4 H 0 1 N N N N N N 105.860 7.297 109.636 -1.303 -1.890 -2.027 H4 A1DH2 28 A1DH2 H5 H5 H 0 1 N N N N N N 107.983 7.355 110.818 1.125 -1.858 -2.728 H5 A1DH2 29 A1DH2 H6 H6 H 0 1 N N N N N N 108.319 7.153 109.065 0.798 -2.952 -1.359 H6 A1DH2 30 A1DH2 H7 H7 H 0 1 N N N N N N 102.091 10.708 112.350 -5.133 -1.829 1.477 H7 A1DH2 31 A1DH2 H8 H8 H 0 1 N N N N N N 108.239 9.788 111.749 1.484 -1.885 1.098 H8 A1DH2 32 A1DH2 H9 H9 H 0 1 N N N N N N 108.862 11.023 110.604 2.176 -0.246 0.998 H9 A1DH2 33 A1DH2 H10 H10 H 0 1 N N N N N N 106.800 10.802 109.242 -0.261 -0.264 1.687 H10 A1DH2 34 A1DH2 H11 H11 H 0 1 N N N N N N 106.412 11.252 110.937 0.050 0.651 0.192 H11 A1DH2 35 A1DH2 H12 H12 H 0 1 N N N N N N 104.257 8.660 108.411 -1.932 1.083 -0.895 H12 A1DH2 36 A1DH2 H13 H13 H 0 1 N N N N N N 104.098 10.806 113.315 -3.338 -3.429 1.730 H13 A1DH2 37 A1DH2 H14 H14 H 0 1 N N N N N N 105.155 9.603 112.996 -1.791 -3.150 1.135 H14 A1DH2 38 A1DH2 H15 H15 H 0 1 N N N N N N 111.539 4.877 106.598 6.416 1.691 1.685 H15 A1DH2 39 A1DH2 H2 H2 H 0 1 N N N N N N 111.174 7.193 109.904 3.317 1.857 -0.848 H2 A1DH2 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DH2 O11 C6 DOUB N N 1 A1DH2 C6 C5 SING N N 2 A1DH2 C6 N7 SING N N 3 A1DH2 C5 C4 DOUB N N 4 A1DH2 N7 C8 SING N N 5 A1DH2 CL23 C21 SING N N 6 A1DH2 C4 N9 SING N N 7 A1DH2 C4 C2 SING N N 8 A1DH2 C8 N9 SING N N 9 A1DH2 C8 O10 DOUB N N 10 A1DH2 O3 C2 DOUB N N 11 A1DH2 C2 N1 SING N N 12 A1DH2 C21 C22 DOUB Y N 13 A1DH2 C21 C20 SING Y N 14 A1DH2 C22 C17 SING Y N 15 A1DH2 C13 C12 SING N N 16 A1DH2 C13 N14 SING N N 17 A1DH2 C12 N1 SING N N 18 A1DH2 N1 C16 SING N N 19 A1DH2 C15 N14 SING N N 20 A1DH2 C15 C16 SING N N 21 A1DH2 C17 N14 SING N N 22 A1DH2 C17 C18 DOUB Y N 23 A1DH2 C20 CL24 SING N N 24 A1DH2 C20 C19 DOUB Y N 25 A1DH2 C19 C18 SING Y N 26 A1DH2 C18 N25 SING N N 27 A1DH2 C5 H1 SING N N 28 A1DH2 C13 H3 SING N N 29 A1DH2 C13 H4 SING N N 30 A1DH2 C12 H5 SING N N 31 A1DH2 C12 H6 SING N N 32 A1DH2 C19 H7 SING N N 33 A1DH2 C16 H8 SING N N 34 A1DH2 C16 H9 SING N N 35 A1DH2 C15 H10 SING N N 36 A1DH2 C15 H11 SING N N 37 A1DH2 C22 H12 SING N N 38 A1DH2 N25 H13 SING N N 39 A1DH2 N25 H14 SING N N 40 A1DH2 N7 H15 SING N N 41 A1DH2 N9 H2 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DH2 SMILES ACDLabs 14.52 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(Cl)cc1N" A1DH2 InChI InChI 1.06 "InChI=1S/C15H15Cl2N5O3/c16-8-5-10(18)12(6-9(8)17)21-1-3-22(4-2-21)14(24)11-7-13(23)20-15(25)19-11/h5-7H,1-4,18H2,(H2,19,20,23,25)" A1DH2 InChIKey InChI 1.06 UPCMDUFLUSQQJH-UHFFFAOYSA-N A1DH2 SMILES_CANONICAL CACTVS 3.385 "Nc1cc(Cl)c(Cl)cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" A1DH2 SMILES CACTVS 3.385 "Nc1cc(Cl)c(Cl)cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" A1DH2 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)N" A1DH2 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(cc(c1Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DH2 "SYSTEMATIC NAME" ACDLabs 14.52 "6-[4-(2-amino-4,5-dichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" A1DH2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "6-[4-[2-azanyl-4,5-bis(chloranyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DH2 "Create component" 2026-05-19 RCSB A1DH2 "Initial release" 2026-09-09 RCSB #