data_A1DI3 # _chem_comp.id A1DI3 _chem_comp.name "1-[4-(1-{6-[4-(1,3-thiazol-2-yl)piperidin-1-yl]-2-(trifluoromethyl)pyrimidin-4-yl}azetidin-3-yl)piperazin-1-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 F3 N7 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-04 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DI3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12KZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DI3 C23 C1 C 0 1 N N N N N N 58.938 80.495 138.273 10.341 -0.781 0.469 C23 A1DI3 1 A1DI3 C22 C2 C 0 1 N N N N N N 59.700 79.285 137.734 8.848 -1.039 0.686 C22 A1DI3 2 A1DI3 C21 C3 C 0 1 N N N N N N 60.185 78.297 138.801 8.046 -0.105 -0.184 C21 A1DI3 3 A1DI3 O1 O1 O 0 1 N N N N N N 61.039 78.692 139.588 8.613 0.687 -0.906 O1 A1DI3 4 A1DI3 N6 N1 N 0 1 N N N N N N 59.679 77.066 138.910 6.700 -0.152 -0.159 N6 A1DI3 5 A1DI3 C18 C4 C 0 1 N N N N N N 58.576 76.552 138.074 5.993 -1.101 0.714 C18 A1DI3 6 A1DI3 C19 C5 C 0 1 N N N N N N 58.835 75.117 137.604 4.949 -0.329 1.528 C19 A1DI3 7 A1DI3 C17 C6 C 0 1 N N N N N N 60.212 76.143 139.931 5.898 0.750 -1.000 C17 A1DI3 8 A1DI3 C16 C7 C 0 1 N N N N N N 60.536 74.802 139.274 4.858 1.445 -0.115 C16 A1DI3 9 A1DI3 N5 N2 N 0 1 N N N N N N 59.315 74.218 138.677 4.088 0.435 0.615 N5 A1DI3 10 A1DI3 C15 C8 C 0 1 N N N N N N 59.670 72.944 138.028 2.969 1.052 1.340 C15 A1DI3 11 A1DI3 C20 C9 C 0 1 N N N N N N 60.108 71.846 138.992 2.024 1.870 0.441 C20 A1DI3 12 A1DI3 C14 C10 C 0 1 N N N N N N 58.435 72.084 137.768 1.776 0.104 1.562 C14 A1DI3 13 A1DI3 N4 N3 N 0 1 N N N N N N 59.037 70.967 138.503 0.920 1.259 1.214 N4 A1DI3 14 A1DI3 C13 C11 C 0 1 Y N N N N N 58.422 70.047 139.233 -0.118 0.875 0.379 C13 A1DI3 15 A1DI3 C12 C12 C 0 1 Y N N N N N 57.059 69.816 139.094 -1.041 1.811 -0.075 C12 A1DI3 16 A1DI3 N7 N4 N 0 1 Y N N N N N 59.130 69.366 140.146 -0.242 -0.394 -0.004 N7 A1DI3 17 A1DI3 C10 C13 C 0 1 Y N N N N N 58.523 68.444 140.906 -1.225 -0.768 -0.798 C10 A1DI3 18 A1DI3 C9 C14 C 0 1 N N N N N N 59.304 67.660 141.927 -1.327 -2.215 -1.205 C9 A1DI3 19 A1DI3 F2 F1 F 0 1 N N N N N N 58.633 67.641 143.071 -1.584 -2.296 -2.578 F2 A1DI3 20 A1DI3 F3 F2 F 0 1 N N N N N N 59.403 66.403 141.519 -0.122 -2.866 -0.917 F3 A1DI3 21 A1DI3 F1 F3 F 0 1 N N N N N N 60.515 68.175 142.122 -2.368 -2.827 -0.499 F1 A1DI3 22 A1DI3 N3 N5 N 0 1 Y N N N N N 57.208 68.203 140.801 -2.122 0.087 -1.245 N3 A1DI3 23 A1DI3 C11 C15 C 0 1 Y N N N N N 56.463 68.855 139.904 -2.065 1.375 -0.912 C11 A1DI3 24 A1DI3 N2 N6 N 0 1 N N N N N N 55.106 68.575 139.863 -3.010 2.269 -1.391 N2 A1DI3 25 A1DI3 C7 C16 C 0 1 N N N N N N 54.511 67.786 140.963 -3.988 1.589 -2.250 C7 A1DI3 26 A1DI3 C8 C17 C 0 1 N N N N N N 53.860 68.826 141.872 -4.746 0.541 -1.433 C8 A1DI3 27 A1DI3 C6 C18 C 0 1 N N N N N N 54.170 69.310 138.987 -3.673 2.975 -0.288 C6 A1DI3 28 A1DI3 C5 C19 C 0 1 N N N N N N 53.523 70.361 139.889 -4.421 1.969 0.588 C5 A1DI3 29 A1DI3 C4 C20 C 0 1 N N N N N N 52.860 69.686 141.097 -5.456 1.228 -0.264 C4 A1DI3 30 A1DI3 C3 C21 C 0 1 Y N N N N N 52.293 70.726 142.049 -6.155 0.193 0.580 C3 A1DI3 31 A1DI3 N1 N7 N 0 1 Y N N N N N 51.049 70.713 142.515 -7.425 0.162 0.809 N1 A1DI3 32 A1DI3 C1 C22 C 0 1 Y N N N N N 50.758 71.705 143.354 -7.874 -0.815 1.570 C1 A1DI3 33 A1DI3 C2 C23 C 0 1 Y N N N N N 51.795 72.598 143.610 -6.931 -1.656 2.007 C2 A1DI3 34 A1DI3 S1 S1 S 0 1 Y N N N N N 53.155 72.060 142.714 -5.382 -1.114 1.365 S1 A1DI3 35 A1DI3 H1 H1 H 0 1 N N N N N N 58.634 81.140 137.436 10.591 -0.955 -0.577 H1 A1DI3 36 A1DI3 H2 H2 H 0 1 N N N N N N 58.044 80.153 138.816 10.574 0.250 0.732 H2 A1DI3 37 A1DI3 H3 H3 H 0 1 N Y N N N N 59.587 81.062 138.956 10.921 -1.457 1.099 H3 A1DI3 38 A1DI3 H4 H4 H 0 1 N N N N N N 59.036 78.743 137.044 8.615 -2.070 0.423 H4 A1DI3 39 A1DI3 H5 H5 H 0 1 N N N N N N 60.579 79.653 137.184 8.598 -0.865 1.733 H5 A1DI3 40 A1DI3 H6 H6 H 0 1 N N N N N N 58.466 77.200 137.192 5.497 -1.858 0.106 H6 A1DI3 41 A1DI3 H7 H7 H 0 1 N N N N N N 57.646 76.571 138.661 6.704 -1.580 1.386 H7 A1DI3 42 A1DI3 H8 H8 H 0 1 N N N N N N 57.896 74.708 137.202 4.341 -1.031 2.099 H8 A1DI3 43 A1DI3 H9 H9 H 0 1 N N N N N N 59.594 75.144 136.808 5.453 0.355 2.211 H9 A1DI3 44 A1DI3 H10 H10 H 0 1 N N N N N N 61.126 76.568 140.370 6.546 1.497 -1.458 H10 A1DI3 45 A1DI3 H11 H11 H 0 1 N N N N N N 59.461 75.994 140.721 5.395 0.175 -1.778 H11 A1DI3 46 A1DI3 H12 H12 H 0 1 N N N N N N 60.935 74.113 140.033 5.363 2.101 0.594 H12 A1DI3 47 A1DI3 H13 H13 H 0 1 N N N N N N 61.288 74.956 138.486 4.184 2.033 -0.738 H13 A1DI3 48 A1DI3 H15 H15 H 0 1 N N N N N N 60.326 73.047 137.151 3.285 1.580 2.240 H15 A1DI3 49 A1DI3 H16 H16 H 0 1 N N N N N N 61.122 71.463 138.802 2.112 2.948 0.578 H16 A1DI3 50 A1DI3 H17 H17 H 0 1 N N N N N N 60.012 72.119 140.053 2.047 1.571 -0.607 H17 A1DI3 51 A1DI3 H18 H18 H 0 1 N N N N N N 57.514 72.475 138.226 1.725 -0.713 0.842 H18 A1DI3 52 A1DI3 H19 H19 H 0 1 N N N N N N 58.254 71.872 136.704 1.666 -0.230 2.594 H19 A1DI3 53 A1DI3 H20 H20 H 0 1 N N N N N N 56.476 70.370 138.373 -0.967 2.849 0.214 H20 A1DI3 54 A1DI3 H21 H21 H 0 1 N N N N N N 53.759 67.084 140.575 -4.693 2.320 -2.647 H21 A1DI3 55 A1DI3 H22 H22 H 0 1 N N N N N N 55.288 67.228 141.505 -3.469 1.101 -3.076 H22 A1DI3 56 A1DI3 H23 H23 H 0 1 N N N N N N 53.333 68.310 142.688 -5.483 0.047 -2.067 H23 A1DI3 57 A1DI3 H24 H24 H 0 1 N N N N N N 54.642 69.475 142.293 -4.043 -0.199 -1.048 H24 A1DI3 58 A1DI3 H25 H25 H 0 1 N N N N N N 54.712 69.792 138.160 -2.925 3.494 0.312 H25 A1DI3 59 A1DI3 H26 H26 H 0 1 N N N N N N 53.408 68.630 138.579 -4.379 3.700 -0.693 H26 A1DI3 60 A1DI3 H27 H27 H 0 1 N N N N N N 54.294 71.061 140.242 -3.714 1.252 1.005 H27 A1DI3 61 A1DI3 H28 H28 H 0 1 N N N N N N 52.762 70.912 139.317 -4.926 2.495 1.398 H28 A1DI3 62 A1DI3 H29 H29 H 0 1 N N N N N N 52.041 69.044 140.739 -6.187 1.940 -0.649 H29 A1DI3 63 A1DI3 H30 H30 H 0 1 N N N N N N 49.783 71.810 143.806 -8.918 -0.928 1.821 H30 A1DI3 64 A1DI3 H31 H31 H 0 1 N N N N N N 51.751 73.466 144.252 -7.091 -2.517 2.639 H31 A1DI3 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DI3 C19 C18 SING N N 1 A1DI3 C19 N5 SING N N 2 A1DI3 C22 C23 SING N N 3 A1DI3 C22 C21 SING N N 4 A1DI3 C14 C15 SING N N 5 A1DI3 C14 N4 SING N N 6 A1DI3 C15 N5 SING N N 7 A1DI3 C15 C20 SING N N 8 A1DI3 C18 N6 SING N N 9 A1DI3 N4 C20 SING N N 10 A1DI3 N4 C13 SING N N 11 A1DI3 N5 C16 SING N N 12 A1DI3 C21 N6 SING N N 13 A1DI3 C21 O1 DOUB N N 14 A1DI3 N6 C17 SING N N 15 A1DI3 C6 N2 SING N N 16 A1DI3 C6 C5 SING N N 17 A1DI3 C12 C13 DOUB Y N 18 A1DI3 C12 C11 SING Y N 19 A1DI3 C13 N7 SING Y N 20 A1DI3 C16 C17 SING N N 21 A1DI3 N2 C11 SING N N 22 A1DI3 N2 C7 SING N N 23 A1DI3 C5 C4 SING N N 24 A1DI3 C11 N3 DOUB Y N 25 A1DI3 N7 C10 DOUB Y N 26 A1DI3 N3 C10 SING Y N 27 A1DI3 C10 C9 SING N N 28 A1DI3 C7 C8 SING N N 29 A1DI3 C4 C8 SING N N 30 A1DI3 C4 C3 SING N N 31 A1DI3 F3 C9 SING N N 32 A1DI3 C9 F1 SING N N 33 A1DI3 C9 F2 SING N N 34 A1DI3 C3 N1 DOUB Y N 35 A1DI3 C3 S1 SING Y N 36 A1DI3 N1 C1 SING Y N 37 A1DI3 S1 C2 SING Y N 38 A1DI3 C1 C2 DOUB Y N 39 A1DI3 C23 H1 SING N N 40 A1DI3 C23 H2 SING N N 41 A1DI3 C23 H3 SING N N 42 A1DI3 C22 H4 SING N N 43 A1DI3 C22 H5 SING N N 44 A1DI3 C18 H6 SING N N 45 A1DI3 C18 H7 SING N N 46 A1DI3 C19 H8 SING N N 47 A1DI3 C19 H9 SING N N 48 A1DI3 C17 H10 SING N N 49 A1DI3 C17 H11 SING N N 50 A1DI3 C16 H12 SING N N 51 A1DI3 C16 H13 SING N N 52 A1DI3 C15 H15 SING N N 53 A1DI3 C20 H16 SING N N 54 A1DI3 C20 H17 SING N N 55 A1DI3 C14 H18 SING N N 56 A1DI3 C14 H19 SING N N 57 A1DI3 C12 H20 SING N N 58 A1DI3 C7 H21 SING N N 59 A1DI3 C7 H22 SING N N 60 A1DI3 C8 H23 SING N N 61 A1DI3 C8 H24 SING N N 62 A1DI3 C6 H25 SING N N 63 A1DI3 C6 H26 SING N N 64 A1DI3 C5 H27 SING N N 65 A1DI3 C5 H28 SING N N 66 A1DI3 C4 H29 SING N N 67 A1DI3 C1 H30 SING N N 68 A1DI3 C2 H31 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DI3 SMILES ACDLabs 14.52 "CCC(=O)N1CCN(CC1)C1CN(C1)c1cc(nc(n1)C(F)(F)F)N1CCC(CC1)c1nccs1" A1DI3 InChI InChI 1.06 "InChI=1S/C23H30F3N7OS/c1-2-20(34)32-10-8-30(9-11-32)17-14-33(15-17)19-13-18(28-22(29-19)23(24,25)26)31-6-3-16(4-7-31)21-27-5-12-35-21/h5,12-13,16-17H,2-4,6-11,14-15H2,1H3" A1DI3 InChIKey InChI 1.06 HKZGSCKVAXLGEZ-UHFFFAOYSA-N A1DI3 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCN(CC1)[C@H]2CN(C2)c3cc(nc(n3)C(F)(F)F)N4CC[C@H](CC4)c5sccn5" A1DI3 SMILES CACTVS 3.385 "CCC(=O)N1CCN(CC1)[CH]2CN(C2)c3cc(nc(n3)C(F)(F)F)N4CC[CH](CC4)c5sccn5" A1DI3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)C2CN(C2)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5nccs5" A1DI3 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)C2CN(C2)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5nccs5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DI3 "SYSTEMATIC NAME" ACDLabs 14.52 "1-[4-(1-{6-[4-(1,3-thiazol-2-yl)piperidin-1-yl]-2-(trifluoromethyl)pyrimidin-4-yl}azetidin-3-yl)piperazin-1-yl]propan-1-one" A1DI3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[4-[1-[6-[4-(1,3-thiazol-2-yl)piperidin-1-yl]-2-(trifluoromethyl)pyrimidin-4-yl]azetidin-3-yl]piperazin-1-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DI3 "Create component" 2026-06-04 RCSB A1DI3 "Modify PCM" 2026-06-04 RCSB A1DI3 "Initial release" 2026-08-12 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DI3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #