data_A1DI7 # _chem_comp.id A1DI7 _chem_comp.name "1-(4-{(2R,3R)-1-[6-{4-[2-(3-methoxyoxetan-3-yl)-4-methylpyridin-3-yl]piperidin-1-yl}-2-(trifluoromethyl)pyrimidin-4-yl]-2-methylazetidin-3-yl}piperazin-1-yl)propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H42 F3 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "AM-8719, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-04 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.705 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DI7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 12LC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DI7 C29 C1 C 0 1 N N N N N N 49.416 70.307 138.635 -7.845 2.099 -0.034 C29 A1DI7 1 A1DI7 O2 O1 O 0 1 N N N N N N 48.368 71.041 139.291 -8.298 1.630 1.242 O2 A1DI7 2 A1DI7 C30 C2 C 0 1 N N N N N N 48.414 70.166 140.432 -6.925 1.455 1.617 C30 A1DI7 3 A1DI7 C27 C3 C 0 1 N N N N N N 49.857 69.856 140.026 -6.593 1.231 0.137 C27 A1DI7 4 A1DI7 O3 O2 O 0 1 N N N N N N 50.067 68.453 140.215 -6.740 -0.119 -0.307 O3 A1DI7 5 A1DI7 C31 C4 C 0 1 N N N N N N 50.919 67.723 139.321 -7.899 -0.777 0.209 C31 A1DI7 6 A1DI7 C23 C5 C 0 1 Y N N N N N 50.823 70.815 140.739 -5.313 1.880 -0.323 C23 A1DI7 7 A1DI7 N7 N1 N 0 1 Y N N N N N 50.219 71.666 141.581 -5.355 3.060 -0.910 N7 A1DI7 8 A1DI7 C24 C6 C 0 1 Y N N N N N 50.871 72.618 142.264 -4.261 3.666 -1.329 C24 A1DI7 9 A1DI7 C25 C7 C 0 1 Y N N N N N 52.246 72.728 142.089 -3.021 3.077 -1.166 C25 A1DI7 10 A1DI7 C26 C8 C 0 1 Y N N N N N 52.924 71.879 141.230 -2.937 1.836 -0.554 C26 A1DI7 11 A1DI7 C28 C9 C 0 1 N N N N N N 54.435 72.096 141.116 -1.604 1.162 -0.357 C28 A1DI7 12 A1DI7 C1 C10 C 0 1 Y N N N N N 52.199 70.908 140.544 -4.108 1.233 -0.122 C1 A1DI7 13 A1DI7 C2 C11 C 0 1 N N N N N N 52.923 69.951 139.583 -4.069 -0.113 0.554 C2 A1DI7 14 A1DI7 C6 C12 C 0 1 N N N N N N 53.658 70.657 138.435 -3.680 -1.187 -0.466 C6 A1DI7 15 A1DI7 C5 C13 C 0 1 N N N N N N 54.544 69.767 137.562 -3.582 -2.542 0.238 C5 A1DI7 16 A1DI7 C3 C14 C 0 1 N N N N N N 53.830 68.957 140.320 -3.031 -0.091 1.680 C3 A1DI7 17 A1DI7 C4 C15 C 0 1 N N N N N N 54.693 68.081 139.411 -2.952 -1.477 2.322 C4 A1DI7 18 A1DI7 N1 N2 N 0 1 N N N N N N 55.381 68.991 138.485 -2.576 -2.468 1.306 N1 A1DI7 19 A1DI7 C7 C16 C 0 1 Y N N N N N 56.755 69.232 138.609 -1.320 -2.196 0.787 C7 A1DI7 20 A1DI7 C10 C17 C 0 1 Y N N N N N 57.359 70.281 137.920 -0.217 -2.089 1.629 C10 A1DI7 21 A1DI7 N2 N3 N 0 1 Y N N N N N 57.495 68.468 139.425 -1.151 -2.038 -0.524 N2 A1DI7 22 A1DI7 C8 C18 C 0 1 Y N N N N N 58.814 68.684 139.569 0.040 -1.779 -1.026 C8 A1DI7 23 A1DI7 C11 C19 C 0 1 N N N N N N 59.622 67.789 140.505 0.184 -1.607 -2.516 C11 A1DI7 24 A1DI7 F2 F1 F 0 1 N N N N N N 58.864 67.507 141.565 0.784 -2.748 -3.060 F2 A1DI7 25 A1DI7 F3 F2 F 0 1 N N N N N N 60.723 68.418 140.902 -1.079 -1.426 -3.089 F3 A1DI7 26 A1DI7 F1 F3 F 0 1 N N N N N N 59.951 66.653 139.895 0.982 -0.489 -2.781 F1 A1DI7 27 A1DI7 N3 N4 N 0 1 Y N N N N N 59.424 69.682 138.908 1.107 -1.665 -0.262 N3 A1DI7 28 A1DI7 C9 C20 C 0 1 Y N N N N N 58.728 70.484 138.085 1.022 -1.814 1.059 C9 A1DI7 29 A1DI7 N4 N5 N 0 1 N N N N N N 59.367 71.469 137.455 2.152 -1.697 1.854 N4 A1DI7 30 A1DI7 C12 C21 C 0 1 N N R N N N 60.565 72.238 137.841 2.636 -0.305 1.883 C12 A1DI7 31 A1DI7 C15 C22 C 0 1 N N N N N N 60.497 72.683 139.303 2.208 0.515 0.664 C15 A1DI7 32 A1DI7 C14 C23 C 0 1 N N N N N N 58.875 72.583 136.624 3.369 -2.046 1.097 C14 A1DI7 33 A1DI7 C13 C24 C 0 1 N N R N N N 60.192 73.329 136.829 4.064 -0.858 1.777 C13 A1DI7 34 A1DI7 N5 N6 N 0 1 N N N N N N 59.936 74.663 137.420 4.943 -0.086 0.888 N5 A1DI7 35 A1DI7 C19 C25 C 0 1 N N N N N N 59.271 75.487 136.385 5.923 -0.960 0.228 C19 A1DI7 36 A1DI7 C18 C26 C 0 1 N N N N N N 59.065 76.943 136.814 6.697 -0.154 -0.820 C18 A1DI7 37 A1DI7 C16 C27 C 0 1 N N N N N N 61.227 75.265 137.801 5.607 1.002 1.618 C16 A1DI7 38 A1DI7 C17 C28 C 0 1 N N N N N N 60.990 76.629 138.454 6.368 1.888 0.626 C17 A1DI7 39 A1DI7 N6 N7 N 0 1 N N N N N N 60.240 77.500 137.523 7.264 1.036 -0.169 N6 A1DI7 40 A1DI7 C20 C29 C 0 1 N N N N N N 60.603 78.779 137.350 8.572 1.338 -0.299 C20 A1DI7 41 A1DI7 O1 O3 O 0 1 N N N N N N 61.568 79.239 137.959 9.297 0.624 -0.959 O1 A1DI7 42 A1DI7 C21 C30 C 0 1 N N N N N N 59.833 79.688 136.388 9.132 2.563 0.377 C21 A1DI7 43 A1DI7 C22 C31 C 0 1 N N N N N N 59.319 81.046 136.870 10.628 2.674 0.073 C22 A1DI7 44 A1DI7 H1 H1 H 0 1 N N N N N N 49.069 69.497 137.976 -8.481 1.783 -0.862 H1 A1DI7 45 A1DI7 H2 H2 H 0 1 N N N N N N 50.148 70.928 138.098 -7.632 3.168 -0.052 H2 A1DI7 46 A1DI7 H3 H3 H 0 1 N N N N N N 48.306 70.669 141.404 -6.472 2.356 2.031 H3 A1DI7 47 A1DI7 H4 H4 H 0 1 N N N N N N 47.727 69.309 140.384 -6.755 0.576 2.238 H4 A1DI7 48 A1DI7 H5 H5 H 0 1 N N N N N N 50.954 66.667 139.627 -7.850 -0.800 1.298 H5 A1DI7 49 A1DI7 H6 H6 H 0 1 N N N N N N 50.523 67.795 138.297 -8.793 -0.237 -0.103 H6 A1DI7 50 A1DI7 H7 H7 H 0 1 N N N N N N 51.933 68.148 139.353 -7.939 -1.797 -0.175 H7 A1DI7 51 A1DI7 H8 H8 H 0 1 N N N N N N 50.342 73.282 142.932 -4.335 4.632 -1.805 H8 A1DI7 52 A1DI7 H9 H9 H 0 1 N N N N N N 52.793 73.486 142.630 -2.128 3.578 -1.511 H9 A1DI7 53 A1DI7 H10 H10 H 0 1 N N N N N N 54.643 72.814 140.309 -1.166 1.489 0.586 H10 A1DI7 54 A1DI7 H11 H11 H 0 1 N N N N N N 54.821 72.492 142.067 -1.743 0.081 -0.337 H11 A1DI7 55 A1DI7 H12 H12 H 0 1 N N N N N N 54.927 71.138 140.890 -0.938 1.427 -1.178 H12 A1DI7 56 A1DI7 H13 H13 H 0 1 N N N N N N 52.135 69.347 139.110 -5.051 -0.342 0.968 H13 A1DI7 57 A1DI7 H14 H14 H 0 1 N N N N N N 54.294 71.440 138.873 -4.438 -1.237 -1.248 H14 A1DI7 58 A1DI7 H15 H15 H 0 1 N N N N N N 52.901 71.121 137.785 -2.716 -0.936 -0.909 H15 A1DI7 59 A1DI7 H16 H16 H 0 1 N N N N N N 53.924 69.094 136.951 -4.550 -2.798 0.669 H16 A1DI7 60 A1DI7 H17 H17 H 0 1 N N N N N N 55.173 70.384 136.904 -3.292 -3.306 -0.482 H17 A1DI7 61 A1DI7 H18 H18 H 0 1 N N N N N N 53.193 68.297 140.927 -2.057 0.177 1.271 H18 A1DI7 62 A1DI7 H19 H19 H 0 1 N N N N N N 54.499 69.529 140.980 -3.325 0.643 2.431 H19 A1DI7 63 A1DI7 H20 H20 H 0 1 N N N N N N 54.061 67.376 138.851 -2.204 -1.468 3.115 H20 A1DI7 64 A1DI7 H21 H21 H 0 1 N N N N N N 55.427 67.521 140.009 -3.924 -1.739 2.743 H21 A1DI7 65 A1DI7 H22 H22 H 0 1 N N N N N N 56.780 70.923 137.273 -0.320 -2.216 2.696 H22 A1DI7 66 A1DI7 H23 H23 H 0 1 N N N N N N 61.511 71.735 137.593 2.435 0.205 2.825 H23 A1DI7 67 A1DI7 H24 H24 H 0 1 N N N N N N 60.778 71.844 139.956 1.120 0.588 0.639 H24 A1DI7 68 A1DI7 H25 H25 H 0 1 N N N N N N 61.191 73.521 139.464 2.638 1.515 0.729 H25 A1DI7 69 A1DI7 H26 H26 H 0 1 N N N N N N 59.472 73.005 139.541 2.560 0.026 -0.244 H26 A1DI7 70 A1DI7 H27 H27 H 0 1 N N N N N N 57.998 73.100 137.041 3.791 -3.012 1.375 H27 A1DI7 71 A1DI7 H28 H28 H 0 1 N N N N N N 58.675 72.307 135.578 3.259 -1.926 0.020 H28 A1DI7 72 A1DI7 H29 H29 H 0 1 N N N N N N 60.836 73.341 135.938 4.525 -1.098 2.735 H29 A1DI7 73 A1DI7 H31 H31 H 0 1 N N N N N N 58.288 75.045 136.164 6.617 -1.353 0.971 H31 A1DI7 74 A1DI7 H32 H32 H 0 1 N N N N N N 59.891 75.475 135.476 5.404 -1.786 -0.258 H32 A1DI7 75 A1DI7 H33 H33 H 0 1 N N N N N N 58.874 77.551 135.917 7.501 -0.765 -1.232 H33 A1DI7 76 A1DI7 H34 H34 H 0 1 N N N N N N 58.193 76.993 137.483 6.021 0.152 -1.619 H34 A1DI7 77 A1DI7 H35 H35 H 0 1 N N N N N N 61.742 74.604 138.513 4.859 1.599 2.139 H35 A1DI7 78 A1DI7 H36 H36 H 0 1 N N N N N N 61.849 75.393 136.903 6.306 0.582 2.341 H36 A1DI7 79 A1DI7 H37 H37 H 0 1 N N N N N N 61.958 77.094 138.692 5.660 2.391 -0.033 H37 A1DI7 80 A1DI7 H38 H38 H 0 1 N N N N N N 60.410 76.496 139.379 6.951 2.630 1.171 H38 A1DI7 81 A1DI7 H39 H39 H 0 1 N N N N N N 58.956 79.119 136.046 8.619 3.450 0.006 H39 A1DI7 82 A1DI7 H40 H40 H 0 1 N N N N N N 60.498 79.884 135.534 8.986 2.483 1.454 H40 A1DI7 83 A1DI7 H41 H41 H 0 1 N N N N N N 58.794 81.553 136.047 11.141 1.786 0.444 H41 A1DI7 84 A1DI7 H42 H42 H 0 1 N Y N N N N 58.625 80.898 137.711 10.774 2.754 -1.004 H42 A1DI7 85 A1DI7 H43 H43 H 0 1 N N N N N N 60.168 81.663 137.199 11.033 3.559 0.562 H43 A1DI7 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DI7 C19 C18 SING N N 1 A1DI7 C19 N5 SING N N 2 A1DI7 C21 C22 SING N N 3 A1DI7 C21 C20 SING N N 4 A1DI7 C14 C13 SING N N 5 A1DI7 C14 N4 SING N N 6 A1DI7 C18 N6 SING N N 7 A1DI7 C13 N5 SING N N 8 A1DI7 C13 C12 SING N N 9 A1DI7 C20 N6 SING N N 10 A1DI7 C20 O1 DOUB N N 11 A1DI7 N5 C16 SING N N 12 A1DI7 N4 C12 SING N N 13 A1DI7 N4 C9 SING N N 14 A1DI7 N6 C17 SING N N 15 A1DI7 C5 C6 SING N N 16 A1DI7 C5 N1 SING N N 17 A1DI7 C16 C17 SING N N 18 A1DI7 C12 C15 SING N N 19 A1DI7 C10 C9 DOUB Y N 20 A1DI7 C10 C7 SING Y N 21 A1DI7 C9 N3 SING Y N 22 A1DI7 C6 C2 SING N N 23 A1DI7 N1 C7 SING N N 24 A1DI7 N1 C4 SING N N 25 A1DI7 C7 N2 DOUB Y N 26 A1DI7 C29 O2 SING N N 27 A1DI7 C29 C27 SING N N 28 A1DI7 N3 C8 DOUB Y N 29 A1DI7 O2 C30 SING N N 30 A1DI7 C31 O3 SING N N 31 A1DI7 C4 C3 SING N N 32 A1DI7 N2 C8 SING Y N 33 A1DI7 C8 C11 SING N N 34 A1DI7 C2 C3 SING N N 35 A1DI7 C2 C1 SING N N 36 A1DI7 F1 C11 SING N N 37 A1DI7 C27 O3 SING N N 38 A1DI7 C27 C30 SING N N 39 A1DI7 C27 C23 SING N N 40 A1DI7 C11 F3 SING N N 41 A1DI7 C11 F2 SING N N 42 A1DI7 C1 C23 DOUB Y N 43 A1DI7 C1 C26 SING Y N 44 A1DI7 C23 N7 SING Y N 45 A1DI7 C28 C26 SING N N 46 A1DI7 C26 C25 DOUB Y N 47 A1DI7 N7 C24 DOUB Y N 48 A1DI7 C25 C24 SING Y N 49 A1DI7 C29 H1 SING N N 50 A1DI7 C29 H2 SING N N 51 A1DI7 C30 H3 SING N N 52 A1DI7 C30 H4 SING N N 53 A1DI7 C31 H5 SING N N 54 A1DI7 C31 H6 SING N N 55 A1DI7 C31 H7 SING N N 56 A1DI7 C24 H8 SING N N 57 A1DI7 C25 H9 SING N N 58 A1DI7 C28 H10 SING N N 59 A1DI7 C28 H11 SING N N 60 A1DI7 C28 H12 SING N N 61 A1DI7 C2 H13 SING N N 62 A1DI7 C6 H14 SING N N 63 A1DI7 C6 H15 SING N N 64 A1DI7 C5 H16 SING N N 65 A1DI7 C5 H17 SING N N 66 A1DI7 C3 H18 SING N N 67 A1DI7 C3 H19 SING N N 68 A1DI7 C4 H20 SING N N 69 A1DI7 C4 H21 SING N N 70 A1DI7 C10 H22 SING N N 71 A1DI7 C12 H23 SING N N 72 A1DI7 C15 H24 SING N N 73 A1DI7 C15 H25 SING N N 74 A1DI7 C15 H26 SING N N 75 A1DI7 C14 H27 SING N N 76 A1DI7 C14 H28 SING N N 77 A1DI7 C13 H29 SING N N 78 A1DI7 C19 H31 SING N N 79 A1DI7 C19 H32 SING N N 80 A1DI7 C18 H33 SING N N 81 A1DI7 C18 H34 SING N N 82 A1DI7 C16 H35 SING N N 83 A1DI7 C16 H36 SING N N 84 A1DI7 C17 H37 SING N N 85 A1DI7 C17 H38 SING N N 86 A1DI7 C21 H39 SING N N 87 A1DI7 C21 H40 SING N N 88 A1DI7 C22 H41 SING N N 89 A1DI7 C22 H42 SING N N 90 A1DI7 C22 H43 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DI7 SMILES ACDLabs 14.52 "COC1(COC1)c1nccc(C)c1C1CCN(CC1)c1cc(nc(n1)C(F)(F)F)N1CC(N2CCN(CC2)C(=O)CC)C1C" A1DI7 InChI InChI 1.06 "InChI=1S/C31H42F3N7O3/c1-5-26(42)40-14-12-38(13-15-40)23-17-41(21(23)3)25-16-24(36-29(37-25)31(32,33)34)39-10-7-22(8-11-39)27-20(2)6-9-35-28(27)30(43-4)18-44-19-30/h6,9,16,21-23H,5,7-8,10-15,17-19H2,1-4H3/t21-,23-/m1/s1" A1DI7 InChIKey InChI 1.06 VKHKDCAORBYSMD-FYYLOGMGSA-N A1DI7 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCN(CC1)[C@@H]2CN([C@@H]2C)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5c(C)ccnc5C6(COC6)OC" A1DI7 SMILES CACTVS 3.385 "CCC(=O)N1CCN(CC1)[CH]2CN([CH]2C)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5c(C)ccnc5C6(COC6)OC" A1DI7 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)[C@@H]2CN([C@@H]2C)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5c(ccnc5C6(COC6)OC)C" A1DI7 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)C2CN(C2C)c3cc(nc(n3)C(F)(F)F)N4CCC(CC4)c5c(ccnc5C6(COC6)OC)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DI7 "SYSTEMATIC NAME" ACDLabs 14.52 "1-(4-{(2R,3R)-1-[6-{4-[2-(3-methoxyoxetan-3-yl)-4-methylpyridin-3-yl]piperidin-1-yl}-2-(trifluoromethyl)pyrimidin-4-yl]-2-methylazetidin-3-yl}piperazin-1-yl)propan-1-one" A1DI7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[4-[(2~{R},3~{R})-1-[6-[4-[2-(3-methoxyoxetan-3-yl)-4-methyl-pyridin-3-yl]piperidin-1-yl]-2-(trifluoromethyl)pyrimidin-4-yl]-2-methyl-azetidin-3-yl]piperazin-1-yl]propan-1-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1DI7 _pdbx_chem_comp_synonyms.name "AM-8719, bound form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DI7 "Create component" 2026-06-04 RCSB A1DI7 "Modify PCM" 2026-06-04 RCSB A1DI7 "Initial release" 2026-08-12 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DI7 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C22 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #