data_A1DJ9 # _chem_comp.id A1DJ9 _chem_comp.name "4-[(3-benzyl-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-8-yl)methyl]-3-fluoro-N-hydroxybenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-16 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.553 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36KI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DJ9 C10 C1 C 0 1 N N N N N N -18.347 7.264 21.208 6.958 0.647 0.926 C10 A1DJ9 1 A1DJ9 C14 C2 C 0 1 N N N N N N -21.264 6.195 28.402 0.832 -0.384 -0.468 C14 A1DJ9 2 A1DJ9 C36 C3 C 0 1 Y N N N N N -20.258 9.143 29.856 -1.804 -2.785 0.701 C36 A1DJ9 3 A1DJ9 C16 C4 C 0 1 N N N N N N -19.379 6.181 29.995 -1.597 0.041 -0.096 C16 A1DJ9 4 A1DJ9 C15 C5 C 0 1 N N N N N N -20.740 5.824 29.768 -0.274 -0.294 0.587 C15 A1DJ9 5 A1DJ9 C01 C6 C 0 1 Y N N N N N -18.740 5.670 23.200 4.976 1.901 0.089 C01 A1DJ9 6 A1DJ9 C02 C7 C 0 1 Y N N N N N -19.044 6.877 22.551 5.702 0.712 0.148 C02 A1DJ9 7 A1DJ9 C03 C8 C 0 1 Y N N N N N -19.978 7.756 23.120 5.240 -0.417 -0.531 C03 A1DJ9 8 A1DJ9 C04 C9 C 0 1 Y N N N N N -20.608 7.418 24.328 4.068 -0.351 -1.257 C04 A1DJ9 9 A1DJ9 C05 C10 C 0 1 Y N N N N N -20.303 6.217 24.987 3.351 0.831 -1.313 C05 A1DJ9 10 A1DJ9 C06 C11 C 0 1 Y N N N N N -19.367 5.333 24.399 3.800 1.954 -0.637 C06 A1DJ9 11 A1DJ9 C08 C12 C 0 1 N N N N N N -21.061 5.892 26.309 2.072 0.895 -2.107 C08 A1DJ9 12 A1DJ9 C17 C13 C 0 1 N N N N N N -18.504 6.168 28.836 -1.467 1.333 -0.899 C17 A1DJ9 13 A1DJ9 C18 C14 C 0 1 N N N N N N -19.125 6.262 27.437 -0.322 1.191 -1.906 C18 A1DJ9 14 A1DJ9 C19 C15 C 0 1 N N N N N N -18.782 4.887 30.674 -2.702 0.162 0.923 C19 A1DJ9 15 A1DJ9 C21 C16 C 0 1 N N N N N N -19.008 6.699 32.161 -3.481 -1.069 -0.861 C21 A1DJ9 16 A1DJ9 C24 C17 C 0 1 Y N N N N N -19.265 8.759 30.756 -1.466 -2.281 -0.548 C24 A1DJ9 17 A1DJ9 C25 C18 C 0 1 N N N N N N -18.056 4.313 32.999 -5.061 -0.631 1.163 C25 A1DJ9 18 A1DJ9 C26 C19 C 0 1 Y N N N N N -19.299 3.521 33.473 -5.963 0.516 0.784 C26 A1DJ9 19 A1DJ9 C27 C20 C 0 1 Y N N N N N -20.561 4.034 33.196 -6.812 0.398 -0.300 C27 A1DJ9 20 A1DJ9 C28 C21 C 0 1 Y N N N N N -21.707 3.355 33.589 -7.639 1.449 -0.648 C28 A1DJ9 21 A1DJ9 C29 C22 C 0 1 Y N N N N N -21.587 2.165 34.270 -7.617 2.619 0.089 C29 A1DJ9 22 A1DJ9 C30 C23 C 0 1 Y N N N N N -20.326 1.648 34.555 -6.768 2.736 1.174 C30 A1DJ9 23 A1DJ9 C31 C24 C 0 1 Y N N N N N -19.181 2.323 34.154 -5.944 1.683 1.524 C31 A1DJ9 24 A1DJ9 C32 C25 C 0 1 Y N N N N N -18.555 9.724 31.482 -0.591 -2.987 -1.365 C32 A1DJ9 25 A1DJ9 C33 C26 C 0 1 Y N N N N N -18.839 11.087 31.303 -0.060 -4.186 -0.931 C33 A1DJ9 26 A1DJ9 C34 C27 C 0 1 Y N N N N N -19.838 11.478 30.396 -0.398 -4.684 0.313 C34 A1DJ9 27 A1DJ9 C35 C28 C 0 1 Y N N N N N -20.540 10.510 29.677 -1.265 -3.982 1.131 C35 A1DJ9 28 A1DJ9 F07 F1 F 0 1 N N N N N N -19.045 4.141 25.007 3.095 3.104 -0.695 F07 A1DJ9 29 A1DJ9 N09 N1 N 0 1 N N N N N N -20.431 5.702 27.346 0.925 0.892 -1.190 N09 A1DJ9 30 A1DJ9 N11 N2 N 0 1 N N N N N N -17.447 6.379 20.540 7.658 -0.504 0.981 N11 A1DJ9 31 A1DJ9 N20 N3 N 0 1 N N N N N N -18.581 5.208 31.936 -3.783 -0.500 0.458 N20 A1DJ9 32 A1DJ9 N22 N4 N 0 1 N N N N N N -18.959 7.308 30.948 -2.005 -1.068 -0.983 N22 A1DJ9 33 A1DJ9 O12 O1 O 0 1 N N N N N N -18.533 8.316 20.696 7.361 1.632 1.512 O12 A1DJ9 34 A1DJ9 O13 O2 O 0 1 N N N N N N -16.861 6.849 19.340 8.863 -0.565 1.722 O13 A1DJ9 35 A1DJ9 O23 O3 O 0 1 N N N N N N -18.579 3.836 30.158 -2.632 0.752 1.980 O23 A1DJ9 36 A1DJ9 H141 H1 H 0 0 N N N N N N -21.315 7.291 28.329 1.784 -0.595 0.020 H141 A1DJ9 37 A1DJ9 H142 H2 H 0 0 N N N N N N -22.272 5.772 28.283 0.600 -1.184 -1.171 H142 A1DJ9 38 A1DJ9 H361 H3 H 0 0 N N N N N N -20.807 8.397 29.300 -2.484 -2.239 1.338 H361 A1DJ9 39 A1DJ9 H151 H4 H 0 0 N N N N N N -21.359 6.331 30.523 -0.363 -1.250 1.104 H151 A1DJ9 40 A1DJ9 H152 H5 H 0 0 N N N N N N -20.834 4.735 29.888 -0.028 0.487 1.306 H152 A1DJ9 41 A1DJ9 H011 H6 H 0 0 N N N N N N -18.015 4.997 22.767 5.329 2.778 0.612 H011 A1DJ9 42 A1DJ9 H031 H7 H 0 0 N N N N N N -20.211 8.690 22.630 5.798 -1.340 -0.489 H031 A1DJ9 43 A1DJ9 H041 H8 H 0 0 N N N N N N -21.337 8.091 24.756 3.710 -1.224 -1.782 H041 A1DJ9 44 A1DJ9 H081 H9 H 0 0 N N N N N N -21.742 6.735 26.500 2.059 1.809 -2.701 H081 A1DJ9 45 A1DJ9 H082 H10 H 0 0 N N N N N N -21.649 4.981 26.123 2.011 0.031 -2.769 H082 A1DJ9 46 A1DJ9 H171 H11 H 0 0 N N N N N N -17.816 7.020 28.942 -2.398 1.526 -1.431 H171 A1DJ9 47 A1DJ9 H172 H12 H 0 0 N N N N N N -17.933 5.229 28.873 -1.256 2.161 -0.223 H172 A1DJ9 48 A1DJ9 H181 H13 H 0 0 N N N N N N -19.183 7.324 27.155 -0.547 0.380 -2.599 H181 A1DJ9 49 A1DJ9 H182 H14 H 0 0 N N N N N N -18.470 5.730 26.731 -0.208 2.122 -2.461 H182 A1DJ9 50 A1DJ9 H211 H15 H 0 0 N N N N N N -20.030 6.743 32.566 -3.862 -2.089 -0.926 H211 A1DJ9 51 A1DJ9 H212 H16 H 0 0 N N N N N N -18.315 7.190 32.860 -3.923 -0.454 -1.645 H212 A1DJ9 52 A1DJ9 H251 H17 H 0 0 N N N N N N -17.291 3.634 32.595 -4.886 -0.616 2.239 H251 A1DJ9 53 A1DJ9 H252 H18 H 0 0 N N N N N N -17.627 4.898 33.826 -5.534 -1.573 0.885 H252 A1DJ9 54 A1DJ9 H271 H19 H 0 0 N N N N N N -20.651 4.972 32.669 -6.829 -0.516 -0.876 H271 A1DJ9 55 A1DJ9 H281 H20 H 0 0 N N N N N N -22.683 3.757 33.362 -8.302 1.358 -1.495 H281 A1DJ9 56 A1DJ9 H291 H21 H 0 0 N N N N N N -22.472 1.632 34.584 -8.263 3.441 -0.183 H291 A1DJ9 57 A1DJ9 H301 H22 H 0 0 N N N N N N -20.238 0.715 35.092 -6.751 3.650 1.750 H301 A1DJ9 58 A1DJ9 H311 H23 H 0 0 N N N N N N -18.205 1.915 34.372 -5.281 1.775 2.372 H311 A1DJ9 59 A1DJ9 H321 H24 H 0 0 N N N N N N -17.789 9.419 32.180 -0.326 -2.598 -2.337 H321 A1DJ9 60 A1DJ9 H331 H25 H 0 0 N N N N N N -18.291 11.832 31.861 0.620 -4.735 -1.566 H331 A1DJ9 61 A1DJ9 H341 H26 H 0 0 N N N N N N -20.062 12.525 30.256 0.018 -5.622 0.650 H341 A1DJ9 62 A1DJ9 H351 H27 H 0 0 N N N N N N -21.306 10.812 28.978 -1.527 -4.374 2.102 H351 A1DJ9 63 A1DJ9 H111 H29 H 0 0 N N N N N N -17.240 5.470 20.903 7.336 -1.290 0.514 H111 A1DJ9 64 A1DJ9 H131 H30 H 0 0 N N N N N N -17.177 7.726 19.155 9.293 -1.430 1.703 H131 A1DJ9 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DJ9 C01 C02 DOUB Y N 1 A1DJ9 C02 C03 SING Y N 2 A1DJ9 C03 C04 DOUB Y N 3 A1DJ9 C04 C05 SING Y N 4 A1DJ9 C05 C06 DOUB Y N 5 A1DJ9 C06 C01 SING Y N 6 A1DJ9 C06 F07 SING N N 7 A1DJ9 C05 C08 SING N N 8 A1DJ9 C08 N09 SING N N 9 A1DJ9 C02 C10 SING N N 10 A1DJ9 C10 N11 SING N N 11 A1DJ9 C10 O12 DOUB N N 12 A1DJ9 N11 O13 SING N N 13 A1DJ9 N09 C14 SING N N 14 A1DJ9 C14 C15 SING N N 15 A1DJ9 C15 C16 SING N N 16 A1DJ9 C16 C17 SING N N 17 A1DJ9 C17 C18 SING N N 18 A1DJ9 C18 N09 SING N N 19 A1DJ9 C16 C19 SING N N 20 A1DJ9 C19 N20 SING N N 21 A1DJ9 N20 C21 SING N N 22 A1DJ9 C21 N22 SING N N 23 A1DJ9 N22 C16 SING N N 24 A1DJ9 C19 O23 DOUB N N 25 A1DJ9 N22 C24 SING N N 26 A1DJ9 N20 C25 SING N N 27 A1DJ9 C25 C26 SING N N 28 A1DJ9 C26 C27 DOUB Y N 29 A1DJ9 C27 C28 SING Y N 30 A1DJ9 C28 C29 DOUB Y N 31 A1DJ9 C29 C30 SING Y N 32 A1DJ9 C30 C31 DOUB Y N 33 A1DJ9 C31 C26 SING Y N 34 A1DJ9 C24 C32 DOUB Y N 35 A1DJ9 C32 C33 SING Y N 36 A1DJ9 C33 C34 DOUB Y N 37 A1DJ9 C34 C35 SING Y N 38 A1DJ9 C35 C36 DOUB Y N 39 A1DJ9 C36 C24 SING Y N 40 A1DJ9 C14 H141 SING N N 41 A1DJ9 C14 H142 SING N N 42 A1DJ9 C36 H361 SING N N 43 A1DJ9 C15 H151 SING N N 44 A1DJ9 C15 H152 SING N N 45 A1DJ9 C01 H011 SING N N 46 A1DJ9 C03 H031 SING N N 47 A1DJ9 C04 H041 SING N N 48 A1DJ9 C08 H081 SING N N 49 A1DJ9 C08 H082 SING N N 50 A1DJ9 C17 H171 SING N N 51 A1DJ9 C17 H172 SING N N 52 A1DJ9 C18 H181 SING N N 53 A1DJ9 C18 H182 SING N N 54 A1DJ9 C21 H211 SING N N 55 A1DJ9 C21 H212 SING N N 56 A1DJ9 C25 H251 SING N N 57 A1DJ9 C25 H252 SING N N 58 A1DJ9 C27 H271 SING N N 59 A1DJ9 C28 H281 SING N N 60 A1DJ9 C29 H291 SING N N 61 A1DJ9 C30 H301 SING N N 62 A1DJ9 C31 H311 SING N N 63 A1DJ9 C32 H321 SING N N 64 A1DJ9 C33 H331 SING N N 65 A1DJ9 C34 H341 SING N N 66 A1DJ9 C35 H351 SING N N 67 A1DJ9 N11 H111 SING N N 68 A1DJ9 O13 H131 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DJ9 SMILES ACDLabs 14.52 "ONC(=O)c1ccc(CN2CCC3(CC2)C(=O)N(CN3c2ccccc2)Cc2ccccc2)c(F)c1" A1DJ9 InChI InChI 1.06 "InChI=1S/C28H29FN4O3/c29-25-17-22(26(34)30-36)11-12-23(25)19-31-15-13-28(14-16-31)27(35)32(18-21-7-3-1-4-8-21)20-33(28)24-9-5-2-6-10-24/h1-12,17,36H,13-16,18-20H2,(H,30,34)" A1DJ9 InChIKey InChI 1.06 NLVGMFGYUPWMFG-UHFFFAOYSA-N A1DJ9 SMILES_CANONICAL CACTVS 3.385 "ONC(=O)c1ccc(CN2CCC3(CC2)N(CN(Cc4ccccc4)C3=O)c5ccccc5)c(F)c1" A1DJ9 SMILES CACTVS 3.385 "ONC(=O)c1ccc(CN2CCC3(CC2)N(CN(Cc4ccccc4)C3=O)c5ccccc5)c(F)c1" A1DJ9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN2CN(C3(C2=O)CCN(CC3)Cc4ccc(cc4F)C(=O)NO)c5ccccc5" A1DJ9 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN2CN(C3(C2=O)CCN(CC3)Cc4ccc(cc4F)C(=O)NO)c5ccccc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DJ9 "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(3-benzyl-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-8-yl)methyl]-3-fluoro-N-hydroxybenzamide" A1DJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-fluoranyl-~{N}-oxidanyl-4-[[4-oxidanylidene-1-phenyl-3-(phenylmethyl)-1,3,8-triazaspiro[4.5]decan-8-yl]methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DJ9 "Create component" 2026-06-16 RCSB A1DJ9 "Initial release" 2026-11-11 RCSB #